Wall clock time and date at job start Tue Mar 31 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46990 * 2 1 4 4 H 1.08997 * 109.46940 * 55.08608 * 3 2 1 5 5 C 1.50701 * 109.46825 * 175.08048 * 3 2 1 6 6 H 1.08001 * 119.99887 * 120.00725 * 5 3 2 7 7 C 1.37882 * 120.00072 * 300.00211 * 5 3 2 8 8 N 1.31512 * 119.99955 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99838 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47197 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47264 * 120.00153 * 9 7 5 12 12 H 1.48500 * 109.47137 * 240.00004 * 9 7 5 13 13 N 1.46900 * 109.47626 * 295.08101 * 3 2 1 14 14 C 1.46895 * 110.99890 * 156.11156 * 13 3 2 15 15 H 1.08999 * 109.47440 * 35.35046 * 14 13 3 16 16 C 1.53003 * 109.47263 * 275.35174 * 14 13 3 17 17 C 1.50704 * 109.47049 * 155.35594 * 14 13 3 18 18 C 1.39374 * 119.50131 * 39.72312 * 17 14 13 19 19 C 1.36094 * 120.98416 * 179.77966 * 18 17 14 20 20 C 1.40539 * 119.65482 * 0.47062 * 19 18 17 21 21 C 1.40532 * 121.28769 * 179.76185 * 20 19 18 22 22 C 1.36092 * 119.65765 * 180.02562 * 21 20 19 23 23 C 1.39375 * 120.98803 * 359.97438 * 22 21 20 24 24 C 1.36097 * 120.98923 * 0.06821 * 23 22 21 25 25 C 1.40532 * 119.65190 * 359.91073 * 24 23 22 26 26 C 1.36088 * 119.50367 * 219.99804 * 17 14 13 27 27 H 1.09000 * 109.47165 * 175.43222 * 1 2 3 28 28 H 1.09007 * 109.46924 * 295.42077 * 1 2 3 29 29 H 1.08997 * 109.47704 * 55.42062 * 1 2 3 30 30 H 1.09002 * 109.47353 * 120.00481 * 2 1 3 31 31 H 1.09001 * 109.46791 * 240.00732 * 2 1 3 32 32 H 0.97002 * 119.99763 * 180.02562 * 8 7 5 33 33 H 1.00893 * 110.99883 * 280.06865 * 13 3 2 34 34 H 1.09000 * 109.46989 * 305.05427 * 16 14 13 35 35 H 1.08998 * 109.47106 * 65.05016 * 16 14 13 36 36 H 1.08998 * 109.47491 * 185.05084 * 16 14 13 37 37 H 1.07997 * 119.51103 * 0.02562 * 18 17 14 38 38 H 1.07994 * 120.17582 * 180.26421 * 19 18 17 39 39 H 1.07998 * 120.17357 * 0.02562 * 21 20 19 40 40 H 1.08002 * 119.51106 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.50847 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.17268 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.17391 * 359.95404 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9811 0.8427 5 6 3.5420 1.4442 0.1218 6 1 4.1463 1.8892 -0.6548 7 6 4.1449 0.8777 1.2249 8 7 3.4091 0.3354 2.1705 9 14 6.0067 0.8805 1.3762 10 1 6.5990 1.5461 0.1882 11 1 6.4025 1.6153 2.6045 12 1 6.4990 -0.5183 1.4560 13 7 1.6497 2.1000 -1.2544 14 6 1.5967 3.5587 -1.0898 15 1 2.3825 3.8758 -0.4041 16 6 0.2331 3.9588 -0.5228 17 6 1.7990 4.2228 -2.4274 18 6 1.2056 3.6739 -3.5628 19 6 1.3646 4.2513 -4.7850 20 6 2.1462 5.4127 -4.9090 21 6 2.3373 6.0342 -6.1548 22 6 3.1011 7.1576 -6.2369 23 6 3.6983 7.7037 -5.1021 24 6 3.5360 7.1287 -3.8793 25 6 2.7537 5.9679 -3.7552 26 6 2.5627 5.3462 -2.5093 27 1 -0.3633 -1.0244 -0.0818 28 1 -0.3633 0.4412 0.9282 29 1 -0.3634 0.5832 -0.8461 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 3.8332 -0.0628 2.9467 33 1 2.2719 1.8432 -2.0059 34 1 -0.5563 3.5639 -1.1622 35 1 0.1241 3.5519 0.4825 36 1 0.1602 5.0457 -0.4846 37 1 0.6076 2.7794 -3.4709 38 1 0.8955 3.8173 -5.6555 39 1 1.8804 5.6225 -7.0426 40 1 3.2468 7.6330 -7.1956 41 1 4.3001 8.5958 -5.1948 42 1 4.0052 7.5628 -3.0088 43 1 3.0193 5.7580 -1.6215 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:50 Heat of formation + Delta-G solvation = 26.415349 kcal Electronic energy + Delta-G solvation = -21788.344350 eV Core-core repulsion = 18797.245948 eV Total energy + Delta-G solvation = -2991.098402 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.27340 -37.57577 -35.67339 -33.34461 -32.45601 -31.45412 -29.69591 -29.26342 -28.21497 -25.98363 -23.66503 -23.09974 -22.55650 -21.78497 -20.23750 -19.37560 -17.12700 -16.84317 -16.53159 -15.89047 -14.82942 -14.63822 -14.58915 -13.89635 -13.74308 -13.48042 -13.29897 -13.19383 -12.82372 -12.71443 -12.23869 -12.13836 -11.79914 -11.45641 -11.34464 -11.20240 -11.11364 -10.90952 -10.79965 -10.68737 -10.61298 -10.27723 -10.08458 -9.82810 -9.58221 -9.49098 -9.04513 -8.37707 -8.33214 -7.72525 -7.29806 -6.00435 -4.13138 0.67451 1.16005 2.20435 3.14048 3.25105 3.34017 3.37724 4.26838 4.39094 4.68309 4.89059 4.93751 5.09499 5.17914 5.23348 5.29353 5.35447 5.50540 5.57200 5.68173 5.86716 5.97764 6.05612 6.10036 6.19102 6.32675 6.37448 6.40937 6.44597 6.51195 6.52533 6.58588 6.70130 6.74884 6.77930 6.94608 6.97420 7.13527 7.18349 7.19572 7.45031 7.60180 7.77854 8.08574 8.15131 8.32631 8.65007 8.99805 9.54778 10.99543 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.004514 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.343929 B = 6201.606180 C = 7181.358210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.035 0.965 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.681 5.681 14 C 0.122 3.878 15 H 0.057 0.943 16 C -0.129 4.129 17 C -0.062 4.062 18 C -0.087 4.087 19 C -0.120 4.120 20 C -0.056 4.056 21 C -0.106 4.106 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.104 4.104 25 C -0.049 4.049 26 C -0.110 4.110 27 H 0.023 0.977 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.329 0.671 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.134 0.866 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.613 10.897 -12.493 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.053 0.947 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.311 5.311 14 C 0.011 3.989 15 H 0.075 0.925 16 C -0.187 4.187 17 C -0.063 4.063 18 C -0.105 4.105 19 C -0.138 4.138 20 C -0.056 4.056 21 C -0.124 4.124 22 C -0.145 4.145 23 C -0.144 4.144 24 C -0.122 4.122 25 C -0.049 4.049 26 C -0.129 4.129 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.146 0.854 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.152 0.848 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.142 0.858 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.284 10.707 -12.186 16.778 hybrid contribution 2.161 0.165 0.229 2.180 sum -2.122 10.873 -11.957 16.300 Atomic orbital electron populations 1.21714 0.99004 0.98432 1.00380 1.21487 0.92097 0.99216 1.01638 1.19178 0.92692 0.91204 0.86227 0.94748 1.21916 0.92821 1.38069 1.05550 0.92878 1.24915 0.97809 0.94994 0.95708 1.69885 1.34680 1.38282 1.09431 0.86637 0.86252 0.77761 0.77939 1.19945 1.21045 1.20962 1.61059 1.56218 1.03997 1.09796 1.20392 0.97310 0.90049 0.91104 0.92538 1.21745 0.96666 0.99108 1.01218 1.19992 0.95402 0.94700 0.96201 1.20891 0.98436 0.99682 0.91517 1.21000 0.99374 0.95389 0.97989 1.18094 0.98417 0.96055 0.93037 1.20995 0.98992 0.96001 0.96429 1.20762 0.98523 0.96789 0.98379 1.20770 1.00542 1.00280 0.92813 1.21040 0.98186 0.95090 0.97882 1.18074 0.97939 0.95633 0.93253 1.20950 0.99323 0.96241 0.96337 0.95745 0.94581 0.93089 0.89192 0.95196 0.92964 0.85397 0.92545 0.92313 0.93730 0.84822 0.85907 0.85971 0.86469 0.86421 0.85831 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.85 37.16 0.37 -2.41 16 2 C -0.11 -2.48 5.45 -26.73 -0.15 -2.63 16 3 C 0.21 5.13 1.80 -68.86 -0.12 5.01 16 4 H 0.03 0.91 7.14 -51.93 -0.37 0.54 16 5 C -0.54 -14.43 8.21 -34.44 -0.28 -14.71 16 6 H 0.05 1.43 7.76 -52.49 -0.41 1.02 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.68 11.29 55.43 0.63 -24.05 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.68 -13.62 4.76 -102.17 -0.49 -14.11 16 14 C 0.12 2.21 2.61 -68.86 -0.18 2.03 16 15 H 0.06 1.16 7.41 -51.93 -0.38 0.78 16 16 C -0.13 -2.14 9.35 37.16 0.35 -1.79 16 17 C -0.06 -1.01 4.68 -104.97 -0.49 -1.50 16 18 C -0.09 -1.29 8.90 -39.93 -0.36 -1.65 16 19 C -0.12 -1.60 9.77 -39.48 -0.39 -1.99 16 20 C -0.06 -0.78 5.74 -106.83 -0.61 -1.39 16 21 C -0.11 -1.24 9.77 -39.49 -0.39 -1.62 16 22 C -0.13 -1.35 9.95 -39.93 -0.40 -1.75 16 23 C -0.13 -1.39 9.95 -39.93 -0.40 -1.79 16 24 C -0.10 -1.30 9.77 -39.49 -0.39 -1.69 16 25 C -0.05 -0.71 5.74 -106.83 -0.61 -1.33 16 26 C -0.11 -1.70 9.36 -39.49 -0.37 -2.07 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.98 7.63 -51.93 -0.40 0.58 16 30 H 0.09 2.37 5.95 -51.93 -0.31 2.06 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 33 H 0.33 6.73 7.70 -39.30 -0.30 6.43 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.04 7.46 -51.93 -0.39 0.65 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.13 1.95 7.67 -52.49 -0.40 1.54 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.12 1.81 8.00 -52.49 -0.42 1.39 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -27.77 349.10 -10.87 -38.64 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.74 Total: 7.72 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -4.51 Total: -29.52 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.14 Total: -38.16 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.77 -10.87 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.055 kcal (2) G-P(sol) polarization free energy of solvation -27.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds