Wall clock time and date at job start Tue Mar 31 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46932 * 2 1 4 4 H 1.08998 * 109.47057 * 185.16703 * 3 2 1 5 5 C 1.50696 * 109.47025 * 305.16855 * 3 2 1 6 6 H 1.07995 * 119.99942 * 120.00185 * 5 3 2 7 7 C 1.37884 * 120.00032 * 299.99520 * 5 3 2 8 8 N 1.31506 * 120.00078 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99762 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47048 * 90.00470 * 9 7 5 11 11 H 1.48502 * 109.46763 * 210.00274 * 9 7 5 12 12 H 1.48504 * 109.47304 * 330.00000 * 9 7 5 13 13 N 1.46903 * 109.46931 * 65.16779 * 3 2 1 14 14 C 1.46897 * 110.99644 * 86.29194 * 13 3 2 15 15 H 1.09003 * 109.47457 * 322.00690 * 14 13 3 16 16 C 1.52996 * 109.47320 * 82.01259 * 14 13 3 17 17 C 1.50707 * 109.47043 * 202.01450 * 14 13 3 18 18 C 1.36129 * 120.16841 * 339.99751 * 17 14 13 19 19 C 1.39333 * 120.98762 * 179.97438 * 18 17 14 20 20 C 1.36127 * 120.98601 * 359.97438 * 19 18 17 21 21 C 1.40495 * 119.65827 * 359.97438 * 20 19 18 22 22 C 1.40546 * 121.29873 * 179.97438 * 21 20 19 23 23 C 1.36091 * 119.65834 * 180.02562 * 22 21 20 24 24 C 1.39383 * 120.99346 * 0.02562 * 23 22 21 25 25 C 1.36088 * 120.98943 * 359.97438 * 24 23 22 26 26 C 1.40494 * 120.17580 * 159.97936 * 17 14 13 27 27 H 1.09002 * 109.46877 * 294.85019 * 1 2 3 28 28 H 1.09002 * 109.47428 * 54.85012 * 1 2 3 29 29 H 1.09003 * 109.46953 * 174.85283 * 1 2 3 30 30 H 1.09004 * 109.46817 * 240.00523 * 2 1 3 31 31 H 1.08994 * 109.47518 * 120.00456 * 2 1 3 32 32 H 0.97000 * 120.00261 * 179.97438 * 8 7 5 33 33 H 1.00900 * 110.99603 * 322.34143 * 13 3 2 34 34 H 1.08999 * 109.47371 * 299.99714 * 16 14 13 35 35 H 1.09006 * 109.47114 * 59.99833 * 16 14 13 36 36 H 1.09000 * 109.47498 * 179.97438 * 16 14 13 37 37 H 1.08005 * 119.50872 * 0.02562 * 18 17 14 38 38 H 1.07992 * 119.50688 * 179.97438 * 19 18 17 39 39 H 1.08001 * 120.17128 * 180.02562 * 20 19 18 40 40 H 1.08003 * 120.17009 * 0.02562 * 22 21 20 41 41 H 1.07997 * 119.50468 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.50762 * 179.71695 * 24 23 22 43 43 H 1.08002 * 120.17235 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1261 1.4440 -0.0925 5 6 1.4359 2.1889 -1.1614 6 1 0.8268 3.0628 -0.9836 7 6 1.6609 1.7561 -2.4511 8 7 2.4023 0.6918 -2.6676 9 14 0.9126 2.6817 -3.8908 10 1 1.8546 3.7360 -4.3449 11 1 0.6530 1.7361 -5.0060 12 1 -0.3648 3.3088 -3.4660 13 7 1.6548 2.0981 1.2570 14 6 2.6482 1.8443 2.3089 15 1 3.0150 0.8214 2.2232 16 6 3.8166 2.8197 2.1532 17 6 2.0094 2.0372 3.6602 18 6 0.8658 2.7660 3.7785 19 6 0.2605 2.9547 5.0192 20 6 0.7950 2.4154 6.1490 21 6 1.9741 1.6561 6.0663 22 6 2.5559 1.0839 7.2107 23 6 3.6990 0.3549 7.0921 24 6 4.3044 0.1661 5.8509 25 6 3.7698 0.7049 4.7214 26 6 2.5909 1.4655 4.8043 27 1 -0.3633 0.4319 0.9325 28 1 -0.3634 0.5916 -0.8403 29 1 -0.3633 -1.0236 -0.0922 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.5603 0.3871 -3.5748 33 1 0.7348 1.8054 1.5502 34 1 4.2786 2.6801 1.1759 35 1 3.4498 3.8426 2.2389 36 1 4.5535 2.6317 2.9340 37 1 0.4204 3.2038 2.8973 38 1 -0.6462 3.5376 5.0855 39 1 0.3146 2.5697 7.1039 40 1 2.0982 1.2221 8.1791 41 1 4.1441 -0.0833 7.9731 42 1 5.2136 -0.4130 5.7852 43 1 4.2502 0.5506 3.7665 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:00 Heat of formation + Delta-G solvation = 35.638105 kcal Electronic energy + Delta-G solvation = -22188.204264 eV Core-core repulsion = 19197.505791 eV Total energy + Delta-G solvation = -2990.698473 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.43813 -37.39084 -36.02648 -34.07863 -31.93001 -30.84408 -30.21411 -28.80935 -28.19819 -26.02660 -23.66594 -23.33390 -22.78449 -22.36487 -20.03409 -18.93909 -17.23915 -17.00651 -16.34169 -15.85422 -15.01160 -14.81424 -14.25504 -14.07199 -13.79292 -13.58258 -13.28918 -13.03353 -12.77000 -12.66568 -12.50597 -12.07848 -11.86678 -11.66004 -11.45164 -11.13626 -11.09272 -10.91542 -10.81989 -10.69897 -10.50655 -10.28526 -9.91973 -9.75013 -9.64097 -9.52964 -8.95944 -8.48048 -8.32336 -7.68727 -7.23986 -5.96403 -3.97519 0.65706 1.14481 2.18114 3.13363 3.33460 3.40209 3.43694 4.24518 4.44649 4.66783 4.86595 4.95694 5.08945 5.13935 5.24285 5.29102 5.35520 5.48145 5.53952 5.63985 5.74624 5.95778 5.98127 6.06289 6.21634 6.28924 6.36149 6.36992 6.38117 6.40588 6.47212 6.56057 6.58113 6.69989 6.79860 6.87278 6.92466 6.96621 7.17119 7.29406 7.32280 7.52475 7.71560 7.90844 8.30049 8.54434 8.62892 9.08021 9.65973 11.10728 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026443 B = 0.004233 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.608453 B = 6613.074475 C = 6962.110524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.035 0.965 5 C -0.486 4.486 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.678 5.678 14 C 0.120 3.880 15 H 0.045 0.955 16 C -0.130 4.130 17 C -0.058 4.058 18 C -0.112 4.112 19 C -0.107 4.107 20 C -0.125 4.125 21 C -0.051 4.051 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.098 4.098 26 C -0.046 4.046 27 H 0.026 0.974 28 H 0.069 0.931 29 H 0.023 0.977 30 H 0.093 0.907 31 H 0.009 0.991 32 H 0.258 0.742 33 H 0.329 0.671 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.139 0.861 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.392 0.230 17.386 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.053 0.947 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.311 5.311 14 C 0.010 3.990 15 H 0.063 0.937 16 C -0.188 4.188 17 C -0.059 4.059 18 C -0.130 4.130 19 C -0.125 4.125 20 C -0.143 4.143 21 C -0.051 4.051 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.116 4.116 26 C -0.047 4.047 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.111 0.889 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.157 0.843 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.731 0.735 17.042 17.073 hybrid contribution -0.556 -0.594 -0.594 1.008 sum 0.175 0.141 16.447 16.449 Atomic orbital electron populations 1.21596 0.97718 0.98682 1.00722 1.22108 0.95026 1.01210 1.00173 1.19243 0.96071 0.88474 0.85433 0.94744 1.21047 1.30455 1.11418 0.89613 0.92033 1.24904 0.95588 0.95145 0.98704 1.69877 1.39121 1.23956 1.20634 0.86587 0.79605 0.79531 0.82202 1.20862 1.21521 1.19966 1.61023 1.03445 1.63182 1.03426 1.20368 0.93911 0.97514 0.87256 0.93708 1.21750 0.96168 0.99597 1.01291 1.20053 0.95092 0.96174 0.94541 1.20933 0.95594 0.98447 0.97995 1.20904 0.99697 0.99218 0.92647 1.20921 0.95712 0.98999 0.98650 1.18052 0.95691 0.98561 0.92844 1.20959 0.96369 0.98282 0.97358 1.20793 0.96204 0.99324 0.97501 1.20814 1.00352 1.00661 0.92650 1.21192 0.94984 0.96372 0.99062 1.17982 0.95642 0.98472 0.92599 0.95474 0.91182 0.95817 0.88895 0.97206 0.93161 0.85172 0.91712 0.92256 0.93657 0.84342 0.86166 0.86111 0.86009 0.86403 0.86240 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.40 37.16 0.35 -2.43 16 2 C -0.15 -3.39 5.49 -26.73 -0.15 -3.54 16 3 C 0.22 5.18 2.14 -68.86 -0.15 5.03 16 4 H 0.03 0.92 6.90 -51.93 -0.36 0.56 16 5 C -0.49 -12.87 7.25 -34.44 -0.25 -13.12 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.44 16 8 N -0.90 -24.98 11.38 55.43 0.63 -24.35 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -13.88 5.25 -102.17 -0.54 -14.42 16 14 C 0.12 2.15 1.99 -68.86 -0.14 2.01 16 15 H 0.05 0.85 6.04 -51.93 -0.31 0.53 16 16 C -0.13 -2.23 9.22 37.16 0.34 -1.89 16 17 C -0.06 -0.94 5.00 -104.53 -0.52 -1.47 16 18 C -0.11 -1.70 8.83 -39.93 -0.35 -2.05 16 19 C -0.11 -1.38 9.95 -39.93 -0.40 -1.78 16 20 C -0.12 -1.55 9.77 -39.49 -0.39 -1.94 16 21 C -0.05 -0.71 5.74 -106.84 -0.61 -1.32 16 22 C -0.11 -1.29 9.77 -39.48 -0.39 -1.68 16 23 C -0.12 -1.32 9.95 -39.93 -0.40 -1.72 16 24 C -0.13 -1.51 9.95 -39.93 -0.40 -1.91 16 25 C -0.10 -1.37 8.73 -39.48 -0.34 -1.72 16 26 C -0.05 -0.71 5.74 -106.84 -0.61 -1.32 16 27 H 0.03 0.52 6.63 -51.93 -0.34 0.18 16 28 H 0.07 1.63 6.85 -51.93 -0.36 1.27 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 2.43 6.23 -51.93 -0.32 2.11 16 31 H 0.01 0.21 7.44 -51.93 -0.39 -0.18 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.33 6.54 5.07 -39.29 -0.20 6.34 16 34 H 0.06 1.20 7.22 -51.93 -0.38 0.83 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.04 0.67 7.23 -51.93 -0.38 0.30 16 37 H 0.14 2.17 6.69 -52.48 -0.35 1.82 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 43 H 0.13 1.77 6.18 -52.49 -0.32 1.45 16 LS Contribution 336.85 15.07 5.08 5.08 Total: -1.00 -27.98 336.85 -10.55 -38.53 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.21 Total: 8.42 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: -4.49 Total: -29.39 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.09 Total: -38.77 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.98 -10.55 -38.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.170 kcal (2) G-P(sol) polarization free energy of solvation -27.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds