Wall clock time and date at job start Tue Mar 31 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47339 * 2 1 4 4 H 1.09009 * 109.46647 * 56.14680 * 3 2 1 5 5 C 1.50699 * 109.47629 * 176.14258 * 3 2 1 6 6 H 1.08003 * 119.99553 * 119.99750 * 5 3 2 7 7 C 1.37879 * 120.00152 * 300.00600 * 5 3 2 8 8 N 1.31514 * 119.99996 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99976 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47386 * 90.00018 * 9 7 5 11 11 H 1.48501 * 109.47116 * 210.00248 * 9 7 5 12 12 H 1.48500 * 109.47093 * 329.99625 * 9 7 5 13 13 N 1.46899 * 109.47348 * 296.15138 * 3 2 1 14 14 C 1.46901 * 111.00405 * 154.21779 * 13 3 2 15 15 H 1.08999 * 109.46756 * 36.88705 * 14 13 3 16 16 C 1.52996 * 109.47096 * 276.88616 * 14 13 3 17 17 C 1.50700 * 109.47137 * 156.88527 * 14 13 3 18 18 C 1.36122 * 120.17462 * 25.00159 * 17 14 13 19 19 C 1.39338 * 120.99144 * 180.02562 * 18 17 14 20 20 C 1.36121 * 120.98596 * 0.02562 * 19 18 17 21 21 C 1.40500 * 119.65383 * 0.02562 * 20 19 18 22 22 C 1.40547 * 121.28528 * 179.97438 * 21 20 19 23 23 C 1.36095 * 119.65316 * 180.02562 * 22 21 20 24 24 C 1.39384 * 120.99129 * 0.02562 * 23 22 21 25 25 C 1.36091 * 120.99267 * 359.95618 * 24 23 22 26 26 C 1.40502 * 120.17038 * 205.02083 * 17 14 13 27 27 H 1.08999 * 109.47018 * 305.21194 * 1 2 3 28 28 H 1.09001 * 109.46770 * 65.21115 * 1 2 3 29 29 H 1.09000 * 109.46917 * 185.20858 * 1 2 3 30 30 H 1.09001 * 109.47219 * 240.00486 * 2 1 3 31 31 H 1.08997 * 109.47202 * 120.00427 * 2 1 3 32 32 H 0.96999 * 120.00246 * 179.97438 * 8 7 5 33 33 H 1.00904 * 110.99658 * 278.16743 * 13 3 2 34 34 H 1.08990 * 109.47342 * 185.24808 * 16 14 13 35 35 H 1.08998 * 109.47179 * 305.25633 * 16 14 13 36 36 H 1.09002 * 109.46730 * 65.24979 * 16 14 13 37 37 H 1.08005 * 119.50593 * 0.03729 * 18 17 14 38 38 H 1.07998 * 119.50522 * 179.97438 * 19 18 17 39 39 H 1.07997 * 120.17257 * 179.72254 * 20 19 18 40 40 H 1.07997 * 120.18046 * 359.97438 * 22 21 20 41 41 H 1.07994 * 119.50602 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.50109 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.16781 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6213 1.9758 0.8535 5 6 3.5440 1.4436 0.0956 6 1 4.1345 1.8934 -0.6889 7 6 4.1660 0.8703 1.1844 8 7 3.4469 0.3229 2.1398 9 14 6.0303 0.8711 1.3024 10 1 6.4813 2.0992 2.0048 11 1 6.4788 -0.3251 2.0595 12 1 6.6128 0.8397 -0.0632 13 7 1.6278 2.1076 -1.2432 14 6 1.5344 3.5617 -1.0564 15 1 2.3299 3.8941 -0.3894 16 6 0.1764 3.9111 -0.4443 17 6 1.6765 4.2496 -2.3896 18 6 1.3558 3.5910 -3.5370 19 6 1.4811 4.2105 -4.7788 20 6 1.9284 5.4921 -4.8807 21 6 2.2701 6.2036 -3.7184 22 6 2.7359 7.5280 -3.7838 23 6 3.0580 8.1859 -2.6368 24 6 2.9336 7.5659 -1.3946 25 6 2.4857 6.2849 -1.2926 26 6 2.1410 5.5740 -2.4549 27 1 -0.3633 0.5926 0.8396 28 1 -0.3633 0.4309 -0.9330 29 1 -0.3633 -1.0234 0.0933 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.8845 -0.0807 2.9056 33 1 2.2549 1.8799 -2.0002 34 1 0.0695 4.9945 -0.3918 35 1 -0.6188 3.4970 -1.0642 36 1 0.1112 3.4905 0.5592 37 1 0.9987 2.5731 -3.4839 38 1 1.2203 3.6653 -5.6738 39 1 2.0247 5.9579 -5.8503 40 1 2.8386 8.0208 -4.7392 41 1 3.4161 9.2034 -2.6899 42 1 3.1964 8.1104 -0.4997 43 1 2.3940 5.8176 -0.3232 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:12 Heat of formation + Delta-G solvation = 30.176269 kcal Electronic energy + Delta-G solvation = -22214.267227 eV Core-core repulsion = 19223.331911 eV Total energy + Delta-G solvation = -2990.935316 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.34967 -37.19450 -35.88897 -33.93752 -31.91040 -31.01857 -30.14613 -28.95322 -28.36252 -25.94984 -23.59537 -22.96130 -22.76684 -22.06962 -19.61754 -19.37008 -17.20794 -16.86005 -16.57327 -16.01647 -14.87731 -14.68467 -14.28948 -13.89857 -13.69291 -13.56957 -13.24657 -13.18141 -12.80151 -12.54669 -12.16798 -12.04279 -11.76119 -11.47185 -11.33289 -11.15140 -11.10357 -11.02907 -10.86695 -10.67712 -10.63056 -10.16823 -10.10429 -9.66630 -9.55305 -9.44843 -9.03173 -8.41454 -8.37282 -7.61022 -7.29925 -6.00657 -4.13195 0.73345 1.21568 2.25726 3.20454 3.26103 3.33599 3.37129 4.32008 4.39062 4.73693 4.93141 5.02645 5.15159 5.20646 5.25645 5.30607 5.37534 5.55882 5.61159 5.69949 5.83303 6.01909 6.09862 6.13848 6.28880 6.33819 6.40873 6.45955 6.46636 6.50327 6.53140 6.64186 6.71373 6.75556 6.80431 6.94772 7.04671 7.13818 7.17916 7.23909 7.45402 7.59810 7.77568 8.08272 8.14356 8.32362 8.64271 8.99455 9.54672 10.99544 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.005359 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.616417 B = 5223.691674 C = 6057.247399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.682 5.682 14 C 0.123 3.877 15 H 0.058 0.942 16 C -0.129 4.129 17 C -0.054 4.054 18 C -0.113 4.113 19 C -0.107 4.107 20 C -0.126 4.126 21 C -0.051 4.051 22 C -0.114 4.114 23 C -0.119 4.119 24 C -0.128 4.128 25 C -0.095 4.095 26 C -0.047 4.047 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.023 0.977 30 H 0.030 0.970 31 H 0.090 0.910 32 H 0.261 0.739 33 H 0.330 0.670 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 11.300 -9.850 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.313 5.313 14 C 0.013 3.987 15 H 0.076 0.924 16 C -0.187 4.187 17 C -0.054 4.054 18 C -0.131 4.131 19 C -0.126 4.126 20 C -0.144 4.144 21 C -0.051 4.051 22 C -0.132 4.132 23 C -0.137 4.137 24 C -0.146 4.146 25 C -0.113 4.113 26 C -0.047 4.047 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.147 0.853 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.154 0.846 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.750 11.083 -9.545 15.379 hybrid contribution 2.152 0.227 0.171 2.171 sum -2.598 11.310 -9.374 14.918 Atomic orbital electron populations 1.21684 0.98974 0.98207 1.00375 1.21486 0.92064 0.99198 1.01668 1.19184 0.92529 0.91132 0.86402 0.94793 1.21872 0.92716 1.37880 1.05946 0.92936 1.24906 0.97853 0.94970 0.95638 1.69873 1.34872 1.37938 1.09594 0.86693 0.86260 0.77530 0.78118 1.20772 1.21139 1.20008 1.61088 1.55523 1.04766 1.09905 1.20307 0.97364 0.89896 0.91156 0.92374 1.21744 0.96577 0.99357 1.01052 1.20087 0.96304 0.92634 0.96418 1.20866 0.99850 1.01040 0.91338 1.20883 0.98968 0.94954 0.97746 1.20900 1.01339 0.95181 0.97001 1.18046 0.99853 0.94231 0.92943 1.20944 1.00074 0.93750 0.98426 1.20789 1.00447 0.99799 0.92673 1.20816 1.00750 0.95482 0.97567 1.21229 0.97397 0.94433 0.98232 1.18001 0.99855 0.94049 0.92833 0.94483 0.93452 0.95770 0.95129 0.89222 0.92895 0.85278 0.93632 0.92428 0.92221 0.84590 0.86313 0.86212 0.86087 0.86469 0.86261 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.73 37.16 0.36 -2.36 16 2 C -0.11 -2.48 5.44 -26.73 -0.15 -2.62 16 3 C 0.22 5.15 1.80 -68.87 -0.12 5.03 16 4 H 0.03 0.90 7.02 -51.92 -0.36 0.53 16 5 C -0.54 -14.47 8.30 -34.44 -0.29 -14.75 16 6 H 0.05 1.41 7.73 -52.48 -0.41 1.01 16 7 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 8 N -0.88 -24.67 11.30 55.43 0.63 -24.05 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -13.74 4.75 -102.17 -0.48 -14.23 16 14 C 0.12 2.26 2.05 -68.87 -0.14 2.12 16 15 H 0.06 1.21 6.24 -51.93 -0.32 0.88 16 16 C -0.13 -2.18 9.33 37.16 0.35 -1.83 16 17 C -0.05 -0.90 4.94 -104.53 -0.52 -1.42 16 18 C -0.11 -1.73 8.81 -39.93 -0.35 -2.08 16 19 C -0.11 -1.42 9.95 -39.93 -0.40 -1.82 16 20 C -0.13 -1.64 9.77 -39.49 -0.39 -2.02 16 21 C -0.05 -0.73 5.74 -106.83 -0.61 -1.35 16 22 C -0.11 -1.41 9.77 -39.48 -0.39 -1.79 16 23 C -0.12 -1.41 9.95 -39.92 -0.40 -1.81 16 24 C -0.13 -1.67 9.95 -39.93 -0.40 -2.06 16 25 C -0.10 -1.44 9.21 -39.48 -0.36 -1.81 16 26 C -0.05 -0.75 5.74 -106.84 -0.61 -1.37 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.90 7.87 -51.93 -0.41 0.50 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 2.36 5.98 -51.93 -0.31 2.05 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.33 6.74 7.05 -39.29 -0.28 6.46 16 34 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.06 7.38 -51.93 -0.38 0.68 16 37 H 0.14 2.07 6.94 -52.48 -0.36 1.71 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 43 H 0.13 1.99 6.48 -52.48 -0.34 1.65 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -27.83 344.57 -10.73 -38.56 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.54 Total: 8.58 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: -4.50 Total: -30.18 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.14 Total: -38.27 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.83 -10.73 -38.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.736 kcal (2) G-P(sol) polarization free energy of solvation -27.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds