Wall clock time and date at job start Tue Mar 31 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47055 * 2 1 4 4 H 1.09007 * 109.47234 * 174.60089 * 3 2 1 5 5 C 1.50702 * 109.46997 * 54.60206 * 3 2 1 6 6 H 1.08002 * 119.99999 * 239.99846 * 5 3 2 7 7 C 1.37880 * 120.00085 * 59.99909 * 5 3 2 8 8 N 1.31512 * 119.99649 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99820 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47231 * 60.00055 * 9 7 5 11 11 H 1.48502 * 109.46946 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47115 * 299.99857 * 9 7 5 13 13 N 1.46899 * 109.47333 * 294.60055 * 3 2 1 14 14 C 1.46899 * 110.99929 * 273.15992 * 13 3 2 15 15 H 1.08995 * 109.46886 * 36.81532 * 14 13 3 16 16 C 1.52998 * 109.47312 * 276.81249 * 14 13 3 17 17 C 1.50707 * 109.46926 * 156.81558 * 14 13 3 18 18 C 1.36121 * 120.17257 * 24.99986 * 17 14 13 19 19 C 1.39330 * 120.98949 * 179.97438 * 18 17 14 20 20 C 1.36131 * 120.99102 * 359.97219 * 19 18 17 21 21 C 1.40510 * 119.65028 * 0.02799 * 20 19 18 22 22 C 1.40543 * 121.28886 * 179.97438 * 21 20 19 23 23 C 1.36088 * 119.65053 * 179.97438 * 22 21 20 24 24 C 1.39378 * 120.99624 * 0.06698 * 23 22 21 25 25 C 1.36086 * 120.99301 * 359.95528 * 24 23 22 26 26 C 1.40503 * 120.17151 * 204.98015 * 17 14 13 27 27 H 1.08999 * 109.46713 * 300.21777 * 1 2 3 28 28 H 1.08999 * 109.47637 * 60.21869 * 1 2 3 29 29 H 1.08996 * 109.46785 * 180.22094 * 1 2 3 30 30 H 1.09001 * 109.46694 * 240.00328 * 2 1 3 31 31 H 1.08997 * 109.47470 * 120.00390 * 2 1 3 32 32 H 0.97004 * 119.99334 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99798 * 37.11572 * 13 3 2 34 34 H 1.09007 * 109.47372 * 59.99825 * 16 14 13 35 35 H 1.08999 * 109.47154 * 180.02562 * 16 14 13 36 36 H 1.09006 * 109.47095 * 300.00297 * 16 14 13 37 37 H 1.07997 * 119.51083 * 359.97438 * 18 17 14 38 38 H 1.07996 * 119.50964 * 180.02562 * 19 18 17 39 39 H 1.07994 * 120.17715 * 179.74964 * 20 19 18 40 40 H 1.07995 * 120.17394 * 359.97438 * 22 21 20 41 41 H 1.08007 * 119.50062 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.50532 * 179.97438 * 24 23 22 43 43 H 1.08008 * 120.17473 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1258 1.4440 0.0967 5 6 1.4315 2.1904 1.1582 6 1 0.8230 3.0641 0.9769 7 6 1.6515 1.7593 2.4493 8 7 2.3928 0.6957 2.6699 9 14 0.8977 2.6868 3.8849 10 1 -0.5814 2.6853 3.7533 11 1 1.2817 2.0254 5.1578 12 1 1.3933 4.0866 3.8847 13 7 1.6596 2.0963 -1.2593 14 6 2.6635 1.8520 -2.3035 15 1 3.0530 0.8389 -2.2030 16 6 3.8087 2.8557 -2.1550 17 6 2.0269 2.0133 -3.6599 18 6 0.9247 2.7979 -3.8094 19 6 0.3228 2.9594 -5.0556 20 6 0.8198 2.3377 -6.1599 21 6 1.9564 1.5197 -6.0448 22 6 2.4980 0.8612 -7.1620 23 6 3.6003 0.0773 -7.0125 24 6 4.2019 -0.0850 -5.7657 25 6 3.7051 0.5365 -4.6617 26 6 2.5683 1.3549 -4.7768 27 1 -0.3633 0.5172 0.8880 28 1 -0.3634 0.5104 -0.8919 29 1 -0.3633 -1.0276 0.0040 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.5473 0.3922 3.5782 33 1 0.7444 1.7966 -1.5602 34 1 4.2691 2.7392 -1.1739 35 1 4.5533 2.6746 -2.9301 36 1 3.4191 3.8688 -2.2554 37 1 0.5105 3.3028 -2.9493 38 1 -0.5507 3.5879 -5.1469 39 1 0.3404 2.4690 -7.1187 40 1 2.0419 0.9768 -8.1341 41 1 4.0148 -0.4273 -7.8728 42 1 5.0757 -0.7132 -5.6745 43 1 4.1820 0.4018 -3.7021 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:20 Heat of formation + Delta-G solvation = 35.291796 kcal Electronic energy + Delta-G solvation = -22192.967004 eV Core-core repulsion = 19202.253513 eV Total energy + Delta-G solvation = -2990.713490 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43313 -37.38017 -36.02968 -34.06651 -31.92523 -30.85901 -30.20396 -28.81319 -28.17846 -26.02249 -23.65468 -23.32150 -22.81880 -22.37802 -20.00922 -18.93425 -17.25281 -17.01766 -16.31817 -15.85465 -15.01286 -14.80996 -14.26636 -14.01806 -13.79615 -13.59874 -13.28356 -13.03021 -12.77172 -12.65216 -12.50355 -12.08259 -11.88674 -11.65269 -11.43148 -11.13800 -11.10407 -10.91039 -10.81453 -10.69997 -10.52417 -10.27904 -9.92150 -9.75159 -9.64389 -9.52723 -8.95864 -8.48046 -8.31901 -7.68740 -7.23890 -5.95799 -3.96972 0.65667 1.14488 2.17960 3.13390 3.35216 3.39697 3.42858 4.24451 4.45077 4.66682 4.86491 4.95678 5.08735 5.14093 5.24572 5.29424 5.36031 5.48277 5.54086 5.63539 5.74001 5.96561 5.99552 6.06377 6.21517 6.29404 6.35848 6.37765 6.38427 6.40669 6.46888 6.56133 6.58477 6.69632 6.79795 6.87226 6.92784 6.96940 7.17052 7.29546 7.32001 7.51620 7.71961 7.91182 8.30428 8.55183 8.63162 9.08183 9.66464 11.11297 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026129 B = 0.004257 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.348511 B = 6575.921796 C = 6919.624647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.120 3.880 15 H 0.045 0.955 16 C -0.130 4.130 17 C -0.059 4.059 18 C -0.110 4.110 19 C -0.107 4.107 20 C -0.124 4.124 21 C -0.052 4.052 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.098 4.098 26 C -0.046 4.046 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.022 0.978 30 H 0.009 0.991 31 H 0.093 0.907 32 H 0.259 0.741 33 H 0.329 0.671 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.058 0.942 37 H 0.138 0.862 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 -0.013 -17.356 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.310 5.310 14 C 0.009 3.991 15 H 0.063 0.937 16 C -0.187 4.187 17 C -0.059 4.059 18 C -0.128 4.128 19 C -0.125 4.125 20 C -0.142 4.142 21 C -0.052 4.052 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.116 4.116 26 C -0.047 4.047 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.028 0.972 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.156 0.844 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.734 0.494 -17.005 17.028 hybrid contribution -0.574 -0.594 0.586 1.013 sum 0.160 -0.100 -16.419 16.420 Atomic orbital electron populations 1.21567 0.97704 0.98145 1.01106 1.22106 0.95034 1.01190 1.00144 1.19234 0.96057 0.88494 0.85391 0.94776 1.21013 1.30484 1.11449 0.89634 0.92096 1.24902 0.95579 0.95167 0.98679 1.69874 1.39086 1.24049 1.20618 0.86645 0.79561 0.80010 0.81663 1.20433 1.21569 1.20376 1.61023 1.03358 1.63169 1.03486 1.20390 0.93893 0.97591 0.87192 0.93680 1.21739 0.96352 0.99364 1.01288 1.20060 0.95367 0.95782 0.94734 1.20916 0.95698 0.98465 0.97745 1.20905 0.99659 0.99184 0.92768 1.20926 0.96205 0.98297 0.98813 1.18055 0.96062 0.98121 0.92928 1.20958 0.96770 0.97671 0.97573 1.20793 0.96438 0.99192 0.97393 1.20814 1.00435 1.00418 0.92789 1.21193 0.95305 0.95938 0.99184 1.17992 0.95994 0.97990 0.92711 0.91424 0.95281 0.95920 0.97223 0.88916 0.93114 0.85183 0.91724 0.93731 0.92274 0.84395 0.86170 0.86108 0.86005 0.86399 0.86235 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.40 37.16 0.35 -2.40 16 2 C -0.15 -3.39 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.19 2.13 -68.87 -0.15 5.05 16 4 H 0.03 0.91 6.98 -51.92 -0.36 0.55 16 5 C -0.49 -12.90 7.33 -34.44 -0.25 -13.15 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.54 5.25 -17.82 -0.09 1.45 16 8 N -0.90 -25.01 11.38 55.43 0.63 -24.38 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 N -0.68 -13.89 5.24 -102.17 -0.54 -14.42 16 14 C 0.12 2.14 2.04 -68.86 -0.14 2.00 16 15 H 0.05 0.85 5.80 -51.93 -0.30 0.55 16 16 C -0.13 -2.22 9.36 37.16 0.35 -1.87 16 17 C -0.06 -0.95 4.94 -104.53 -0.52 -1.47 16 18 C -0.11 -1.67 8.81 -39.94 -0.35 -2.02 16 19 C -0.11 -1.38 9.95 -39.93 -0.40 -1.78 16 20 C -0.12 -1.54 9.77 -39.48 -0.39 -1.93 16 21 C -0.05 -0.71 5.74 -106.83 -0.61 -1.32 16 22 C -0.11 -1.30 9.77 -39.49 -0.39 -1.68 16 23 C -0.12 -1.32 9.95 -39.93 -0.40 -1.72 16 24 C -0.13 -1.52 9.95 -39.93 -0.40 -1.91 16 25 C -0.10 -1.38 9.19 -39.48 -0.36 -1.75 16 26 C -0.05 -0.71 5.74 -106.83 -0.61 -1.32 16 27 H 0.07 1.58 7.01 -51.93 -0.36 1.22 16 28 H 0.03 0.57 6.45 -51.93 -0.33 0.23 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.20 7.49 -51.93 -0.39 -0.19 16 31 H 0.09 2.42 6.23 -51.93 -0.32 2.10 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.33 6.56 5.20 -39.29 -0.20 6.36 16 34 H 0.06 1.20 7.32 -51.93 -0.38 0.82 16 35 H 0.04 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.14 2.15 6.93 -52.49 -0.36 1.79 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 43 H 0.13 1.79 6.49 -52.48 -0.34 1.45 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -27.96 338.94 -10.61 -38.57 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.29 Total: 8.33 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -4.50 Total: -29.37 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.10 Total: -38.80 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.96 -10.61 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.864 kcal (2) G-P(sol) polarization free energy of solvation -27.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds