Wall clock time and date at job start Tue Mar 31 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99979 * 2 1 4 4 C 1.52992 * 109.47352 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.47200 * 67.06052 * 4 3 2 6 6 C 1.46894 * 110.99757 * 290.01941 * 5 4 3 7 7 C 1.50700 * 109.47027 * 299.69452 * 6 5 4 8 8 H 1.07996 * 119.99981 * 354.88004 * 7 6 5 9 9 C 1.37880 * 120.00051 * 174.88250 * 7 6 5 10 10 N 1.31519 * 119.99613 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00179 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46515 * 60.00303 * 11 9 7 13 13 H 1.48498 * 109.46978 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47283 * 300.00458 * 11 9 7 15 15 C 1.46901 * 110.99605 * 53.96841 * 5 4 3 16 16 C 1.50701 * 109.47296 * 66.05370 * 15 5 4 17 17 N 1.29945 * 126.28278 * 269.97452 * 16 15 5 18 18 O 1.21305 * 110.25095 * 179.72537 * 17 16 15 19 19 C 1.33644 * 109.80954 * 0.46377 * 18 17 16 20 20 C 1.50698 * 126.54899 * 179.80346 * 19 18 17 21 21 C 1.52997 * 109.47240 * 59.69154 * 20 19 18 22 22 C 1.52995 * 109.47333 * 299.68958 * 20 19 18 23 23 N 1.31132 * 106.89350 * 359.54015 * 19 18 17 24 24 H 1.09003 * 109.47048 * 299.99721 * 1 2 3 25 25 H 1.08994 * 109.47332 * 60.00009 * 1 2 3 26 26 H 1.08998 * 109.47040 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47254 * 59.99725 * 3 2 1 28 28 H 1.09005 * 109.47106 * 300.00644 * 3 2 1 29 29 H 1.08992 * 109.47601 * 307.06369 * 4 3 2 30 30 H 1.09007 * 109.47180 * 187.05670 * 4 3 2 31 31 H 1.09001 * 109.47726 * 59.69924 * 6 5 4 32 32 H 1.09001 * 109.46983 * 179.69847 * 6 5 4 33 33 H 0.97004 * 119.99383 * 180.02562 * 10 9 7 34 34 H 1.08997 * 109.47558 * 306.04700 * 15 5 4 35 35 H 1.09006 * 109.47018 * 186.04708 * 15 5 4 36 36 H 1.09005 * 109.46951 * 179.68876 * 20 19 18 37 37 H 1.09005 * 109.46921 * 299.99740 * 21 20 19 38 38 H 1.08998 * 109.47350 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.47659 * 59.99553 * 21 20 19 40 40 H 1.09004 * 109.47375 * 180.02562 * 22 20 19 41 41 H 1.09002 * 109.46772 * 300.00107 * 22 20 19 42 42 H 1.08995 * 109.47195 * 60.00088 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9804 0.6082 -1.2764 6 6 3.6003 -0.8073 -1.3755 7 6 4.2434 -1.5798 -0.2526 8 1 4.9366 -1.0879 0.4135 9 6 3.9467 -2.9147 -0.0758 10 7 3.1029 -3.5138 -0.8875 11 14 4.7443 -3.8725 1.3155 12 1 4.3845 -3.2498 2.6148 13 1 4.2622 -5.2768 1.2897 14 1 6.2197 -3.8519 1.1485 15 6 3.4537 1.3755 -2.4130 16 6 4.0603 2.7550 -2.4122 17 7 3.5824 3.8048 -1.8138 18 8 4.3064 4.7602 -1.9999 19 6 5.3412 4.4018 -2.7660 20 6 6.4642 5.2925 -3.2312 21 6 7.1983 5.8643 -2.0167 22 6 5.8928 6.4389 -4.0679 23 7 5.1955 3.1258 -3.0307 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 3.8491 0.5385 0.8191 30 1 3.9781 2.1728 0.1256 31 1 2.5164 -0.8983 -1.3050 32 1 3.9372 -1.2079 -2.3316 33 1 2.8939 -4.4528 -0.7628 34 1 2.3701 1.4550 -2.3268 35 1 3.7079 0.8674 -3.3434 36 1 7.1607 4.7127 -3.8369 37 1 6.5018 6.4441 -1.4110 38 1 8.0109 6.5081 -2.3531 39 1 7.6054 5.0476 -1.4205 40 1 6.7052 7.0829 -4.4048 41 1 5.3699 6.0316 -4.9332 42 1 5.1964 7.0187 -3.4622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072688889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:31 Heat of formation + Delta-G solvation = 32.557018 kcal Electronic energy + Delta-G solvation = -23199.546494 eV Core-core repulsion = 19797.865152 eV Total energy + Delta-G solvation = -3401.681342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.36841 -38.29570 -36.40535 -36.18095 -34.90681 -32.48412 -31.31958 -29.17599 -27.99599 -27.54372 -25.96792 -24.92745 -24.21185 -23.14014 -22.41946 -20.56332 -19.34382 -17.89728 -17.12281 -16.34332 -16.12331 -15.92526 -15.65401 -14.81261 -14.60626 -14.35671 -14.01718 -13.81589 -13.60952 -13.28726 -12.56689 -12.53548 -12.15477 -11.95703 -11.91940 -11.71721 -11.50420 -11.47176 -11.34260 -11.26908 -11.07045 -10.93945 -10.73226 -10.67409 -10.58060 -10.14015 -9.87195 -9.64286 -9.07943 -8.95781 -8.27587 -7.15169 -5.87141 -3.84897 1.34223 2.49162 2.91917 3.42152 3.45131 3.48539 3.77758 4.27401 4.42165 4.56206 4.58538 4.67044 4.82661 5.10661 5.22921 5.26984 5.44270 5.48057 5.49957 5.56810 5.58965 5.65416 5.71576 5.82965 5.84853 5.88221 5.91154 5.92295 6.03829 6.12495 6.17454 6.24801 6.30953 6.77363 7.30723 7.71049 7.86210 7.88092 8.10244 8.29689 8.43130 8.64243 9.18811 9.75724 11.24355 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020983 B = 0.004358 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.070623 B = 6424.102133 C = 7153.596009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.345 6.345 3 C 0.026 3.974 4 C 0.063 3.937 5 N -0.524 5.524 6 C 0.184 3.816 7 C -0.494 4.494 8 H 0.057 0.943 9 C 0.060 3.940 10 N -0.897 5.897 11 Si 0.892 3.108 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.279 1.279 15 C 0.132 3.868 16 C 0.198 3.802 17 N -0.389 5.389 18 O 0.071 5.929 19 C 0.169 3.831 20 C 0.002 3.998 21 C -0.151 4.151 22 C -0.150 4.150 23 N -0.465 5.465 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.021 0.979 33 H 0.258 0.742 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 19.109 -3.987 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.262 6.262 3 C -0.052 4.052 4 C -0.066 4.066 5 N -0.248 5.248 6 C 0.060 3.940 7 C -0.533 4.533 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.537 5.537 11 Si 0.721 3.279 12 H -0.205 1.205 13 H -0.215 1.215 14 H -0.204 1.204 15 C 0.002 3.998 16 C -0.075 4.075 17 N -0.098 5.098 18 O 0.014 5.986 19 C -0.052 4.052 20 C -0.018 4.018 21 C -0.209 4.209 22 C -0.208 4.208 23 N -0.198 5.198 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.133 0.867 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.884 18.337 -3.759 18.813 hybrid contribution -0.659 -0.315 0.797 1.081 sum 1.225 18.022 -2.962 18.305 Atomic orbital electron populations 1.22677 0.83581 1.02277 0.98356 1.88457 1.17469 1.25694 1.94626 1.23269 0.97124 0.85858 0.98972 1.22194 0.89817 0.99294 0.95280 1.62351 1.58094 1.05656 0.98739 1.20076 0.97490 0.79111 0.97290 1.20948 1.24919 0.94265 1.13159 0.92513 1.24853 0.95315 0.97598 0.96278 1.69950 1.34802 1.11124 1.37781 0.86662 0.79611 0.78833 0.82822 1.20478 1.21525 1.20430 1.20434 0.96094 0.84624 0.98599 1.26005 0.90059 0.98015 0.93454 1.74640 1.16530 0.96451 1.22222 1.85225 1.27969 1.33123 1.52309 1.28795 0.92776 0.91610 0.92052 1.19775 0.90074 0.93933 0.98001 1.21907 1.00619 1.01690 0.96680 1.21901 1.01951 0.97075 0.99843 1.71926 1.16199 1.08533 1.23113 0.95295 0.95295 0.89873 0.94436 0.93993 0.88267 0.92162 0.94133 0.96082 0.93231 0.92387 0.88322 0.86750 0.91567 0.90650 0.91633 0.90639 0.91898 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.34 -7.52 7.58 -35.23 -0.27 -7.79 16 3 C 0.03 0.51 5.70 37.15 0.21 0.72 16 4 C 0.06 1.32 5.44 -3.82 -0.02 1.30 16 5 N -0.52 -11.83 4.74 -237.52 -1.13 -12.96 16 6 C 0.18 4.86 4.29 -4.98 -0.02 4.84 16 7 C -0.49 -14.12 8.21 -34.44 -0.28 -14.40 16 8 H 0.06 1.62 6.98 -52.49 -0.37 1.26 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 10 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 11 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.13 2.59 5.23 -4.97 -0.03 2.57 16 16 C 0.20 3.60 6.85 -156.38 -1.07 2.53 16 17 N -0.39 -6.67 11.63 30.90 0.36 -6.31 16 18 O 0.07 1.04 11.31 18.10 0.20 1.25 16 19 C 0.17 2.28 7.02 -13.06 -0.09 2.19 16 20 C 0.00 0.02 3.39 -91.78 -0.31 -0.29 16 21 C -0.15 -1.08 9.17 37.16 0.34 -0.74 16 22 C -0.15 -0.97 9.17 37.16 0.34 -0.63 16 23 N -0.46 -7.95 11.55 -9.87 -0.11 -8.06 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.78 5.79 -51.93 -0.30 0.48 16 29 H 0.10 2.29 6.33 -51.93 -0.33 1.96 16 30 H 0.06 1.19 7.08 -51.93 -0.37 0.82 16 31 H 0.04 1.14 5.29 -51.93 -0.27 0.86 16 32 H 0.02 0.60 8.05 -51.93 -0.42 0.18 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.06 1.11 5.71 -51.93 -0.30 0.82 16 35 H 0.10 1.91 8.01 -51.93 -0.42 1.49 16 36 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 343.01 15.07 5.17 5.17 Total: -1.00 -32.74 343.01 -6.53 -39.27 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.55 Total: -2.93 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 0.08 Total: 1.33 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.14 Total: -53.53 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.06 Total: -6.54 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.74 -6.53 -39.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072688889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.826 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds