Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46801 * 2 1 4 4 C 1.50706 * 109.46908 * 180.02562 * 3 2 1 5 5 N 1.31124 * 126.55485 * 89.71082 * 4 3 2 6 6 C 1.34490 * 105.61858 * 179.91302 * 5 4 3 7 7 C 1.50700 * 126.29035 * 180.12391 * 6 5 4 8 8 N 1.46896 * 109.47302 * 270.24044 * 7 6 5 9 9 C 1.46906 * 111.00163 * 189.99766 * 8 7 6 10 10 C 1.50696 * 109.46957 * 175.74636 * 9 8 7 11 11 H 1.07996 * 120.00152 * 354.88384 * 10 9 8 12 12 C 1.37882 * 119.99619 * 174.88344 * 10 9 8 13 13 N 1.31510 * 120.00237 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99872 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46761 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47100 * 119.99903 * 14 12 10 17 17 H 1.48500 * 109.46826 * 239.99781 * 14 12 10 18 18 C 1.46903 * 110.99534 * 66.04807 * 8 7 6 19 19 C 1.52995 * 109.47389 * 53.97244 * 18 8 7 20 20 O 1.42894 * 109.47711 * 67.05418 * 19 18 8 21 21 C 1.42897 * 114.00549 * 180.02562 * 20 19 18 22 22 N 1.29944 * 107.42211 * 0.35319 * 6 5 4 23 23 O 1.21299 * 110.25712 * 359.77357 * 22 6 5 24 24 H 1.08997 * 109.47159 * 299.99818 * 1 2 3 25 25 H 1.08996 * 109.47486 * 60.00239 * 1 2 3 26 26 H 1.09002 * 109.46898 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47159 * 240.00182 * 2 1 3 28 28 H 1.08996 * 109.47486 * 119.99761 * 2 1 3 29 29 H 1.08997 * 109.47115 * 60.00155 * 3 2 1 30 30 H 1.09000 * 109.47218 * 299.99427 * 3 2 1 31 31 H 1.08997 * 109.47125 * 30.24630 * 7 6 5 32 32 H 1.09007 * 109.46779 * 150.24067 * 7 6 5 33 33 H 1.08998 * 109.47036 * 295.74760 * 9 8 7 34 34 H 1.09004 * 109.46456 * 55.74602 * 9 8 7 35 35 H 0.96995 * 120.00239 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.46633 * 173.96751 * 18 8 7 37 37 H 1.08996 * 109.47049 * 293.96597 * 18 8 7 38 38 H 1.08997 * 109.47172 * 187.06259 * 19 18 8 39 39 H 1.09006 * 109.47064 * 307.05521 * 19 18 8 40 40 H 1.08994 * 109.47476 * 180.02562 * 21 20 19 41 41 H 1.09005 * 109.46872 * 300.00793 * 21 20 19 42 42 H 1.09000 * 109.46819 * 60.00353 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3275 1.4374 -1.0543 6 6 5.5838 1.4418 -0.5742 7 6 6.8505 1.4412 -1.3905 8 7 7.2618 0.0561 -1.6554 9 6 8.6087 0.0095 -2.2401 10 6 9.0371 -1.4263 -2.4007 11 1 8.4117 -2.2219 -2.0236 12 6 10.2277 -1.7243 -3.0290 13 7 10.9891 -0.7555 -3.4887 14 14 10.7586 -3.5042 -3.2287 15 1 9.7332 -4.3965 -2.6307 16 1 10.9067 -3.8175 -4.6727 17 1 12.0580 -3.7132 -2.5409 18 6 6.2889 -0.6257 -2.5196 19 6 6.0695 0.1983 -3.7898 20 8 7.2675 0.2010 -4.5689 21 6 7.1694 0.9474 -5.7834 22 7 5.5047 1.4416 0.7228 23 8 4.3433 1.4421 1.0727 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 6.6740 1.9550 -2.3355 32 1 7.6382 1.9550 -0.8393 33 1 8.5986 0.4969 -3.2150 34 1 9.3081 0.5261 -1.5828 35 1 11.8268 -0.9651 -3.9304 36 1 6.6691 -1.6116 -2.7872 37 1 5.3434 -0.7328 -1.9881 38 1 5.2587 -0.2399 -4.3717 39 1 5.8102 1.2218 -3.5187 40 1 8.1187 0.8999 -6.3168 41 1 6.3812 0.5251 -6.4068 42 1 6.9332 1.9863 -5.5533 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072690189.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = 29.408190 kcal Electronic energy + Delta-G solvation = -23122.599324 eV Core-core repulsion = 19720.781439 eV Total energy + Delta-G solvation = -3401.817886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.36929 -38.28191 -36.29305 -35.96291 -34.81411 -32.51745 -31.97175 -29.13591 -28.12321 -27.76681 -25.94166 -24.90675 -23.44960 -22.73105 -22.18503 -21.07346 -19.51527 -17.88434 -17.23286 -16.25230 -16.02194 -15.86959 -15.54495 -15.12671 -14.73162 -14.36356 -14.01963 -13.81179 -13.67933 -13.36729 -12.86112 -12.32785 -12.09469 -11.94502 -11.91232 -11.75981 -11.48883 -11.45352 -11.31339 -11.07857 -11.02709 -10.93764 -10.79609 -10.65966 -10.57202 -10.10060 -9.87996 -9.62335 -9.04955 -8.92732 -8.28353 -7.14362 -5.87578 -3.85156 1.34994 2.45760 2.93334 3.39145 3.46001 3.50742 3.80221 4.31034 4.45583 4.56401 4.59863 4.67723 4.79362 5.08787 5.19655 5.24627 5.37325 5.40412 5.49648 5.61883 5.69387 5.71850 5.74083 5.79537 5.80656 5.87244 5.94059 5.96417 6.10706 6.15766 6.18789 6.22399 6.30181 6.80284 7.31416 7.72197 7.87483 7.90471 8.10762 8.29937 8.44528 8.64375 9.19248 9.75617 11.24023 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019736 B = 0.004237 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.420191 B = 6606.516477 C = 6829.211080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.022 4.022 4 C 0.163 3.837 5 N -0.476 5.476 6 C 0.194 3.806 7 C 0.133 3.867 8 N -0.526 5.526 9 C 0.183 3.817 10 C -0.492 4.492 11 H 0.058 0.942 12 C 0.059 3.941 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.286 1.286 18 C 0.066 3.934 19 C 0.028 3.972 20 O -0.346 6.346 21 C 0.029 3.971 22 N -0.372 5.372 23 O 0.073 5.927 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.020 0.980 35 H 0.257 0.743 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.028 0.972 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.817 5.813 3.172 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.061 4.061 4 C -0.058 4.058 5 N -0.211 5.211 6 C -0.080 4.080 7 C 0.003 3.997 8 N -0.251 5.251 9 C 0.059 3.941 10 C -0.531 4.531 11 H 0.076 0.924 12 C -0.141 4.141 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.199 1.199 16 H -0.213 1.213 17 H -0.213 1.213 18 C -0.063 4.063 19 C -0.051 4.051 20 O -0.264 6.264 21 C -0.068 4.068 22 N -0.080 5.080 23 O 0.014 5.986 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.047 0.953 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -18.614 5.495 3.687 19.756 hybrid contribution -0.009 -0.349 -1.041 1.098 sum -18.623 5.146 2.646 19.502 Atomic orbital electron populations 1.21741 0.94512 1.02359 1.02123 1.21550 0.96548 0.94472 1.03650 1.20219 0.80554 0.99839 1.05530 1.28748 0.98454 0.97306 0.81317 1.71877 1.00549 1.19763 1.28865 1.25987 0.94996 0.98909 0.88107 1.20416 0.88445 0.94523 0.96350 1.62373 1.05510 1.10001 1.47209 1.20089 0.80972 0.98379 0.94663 1.21025 1.04484 0.91805 1.35799 0.92407 1.24859 0.96680 0.96847 0.95735 1.69962 1.12762 1.31128 1.39789 0.86545 0.78375 0.85559 0.77490 1.19913 1.21272 1.21286 1.22159 0.95334 0.99753 0.89036 1.23258 0.87773 0.99965 0.94092 1.88449 1.33180 1.72561 1.32240 1.22666 1.01616 0.94526 0.88024 1.74659 0.96543 1.20646 1.16110 1.85294 1.11712 1.65787 1.35813 0.92360 0.92316 0.92111 0.90817 0.91091 0.88340 0.87567 0.91955 0.88802 0.94038 0.96221 0.93346 0.88541 0.91932 0.94537 0.93602 0.89979 0.95331 0.95295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 3 C -0.02 -0.17 5.84 -27.88 -0.16 -0.33 16 4 C 0.16 2.07 7.77 -13.06 -0.10 1.96 16 5 N -0.48 -7.47 11.03 -9.86 -0.11 -7.57 16 6 C 0.19 3.47 6.83 -156.38 -1.07 2.40 16 7 C 0.13 2.58 5.23 -4.98 -0.03 2.55 16 8 N -0.53 -11.83 4.74 -237.52 -1.13 -12.96 16 9 C 0.18 4.82 4.29 -4.97 -0.02 4.80 16 10 C -0.49 -14.07 8.21 -34.44 -0.28 -14.36 16 11 H 0.06 1.66 6.98 -52.49 -0.37 1.30 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 14 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 15 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 C 0.07 1.36 5.45 -3.83 -0.02 1.34 16 19 C 0.03 0.52 5.69 37.15 0.21 0.73 16 20 O -0.35 -7.46 7.58 -35.23 -0.27 -7.73 16 21 C 0.03 0.49 11.01 101.05 1.11 1.60 16 22 N -0.37 -6.68 12.16 30.90 0.38 -6.30 16 23 O 0.07 1.08 11.31 18.08 0.20 1.28 16 24 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.18 5.71 -51.93 -0.30 0.88 16 32 H 0.09 1.82 8.01 -51.92 -0.42 1.40 16 33 H 0.04 1.16 5.29 -51.93 -0.27 0.89 16 34 H 0.02 0.56 8.05 -51.93 -0.42 0.14 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.10 2.20 6.33 -51.93 -0.33 1.88 16 37 H 0.06 1.20 7.07 -51.93 -0.37 0.84 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.83 5.80 -51.93 -0.30 0.53 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -32.84 343.69 -6.83 -39.67 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.55 Total: -3.45 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.25 Total: 0.84 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.12 Total: -53.05 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.06 Total: -6.45 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.84 -6.83 -39.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690189.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.080 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds