Wall clock time and date at job start Tue Mar 31 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99515 * 2 1 4 4 C 1.52995 * 109.46747 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47333 * 67.06118 * 4 3 2 6 6 C 1.46898 * 111.00111 * 290.01518 * 5 4 3 7 7 C 1.50692 * 109.47386 * 299.69910 * 6 5 4 8 8 H 1.08004 * 119.99964 * 354.87731 * 7 6 5 9 9 C 1.37878 * 120.00337 * 174.87992 * 7 6 5 10 10 N 1.31513 * 119.99765 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00333 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47249 * 89.99854 * 11 9 7 13 13 H 1.48491 * 109.46951 * 209.99983 * 11 9 7 14 14 H 1.48498 * 109.46984 * 329.99813 * 11 9 7 15 15 C 1.46896 * 110.99566 * 53.97087 * 5 4 3 16 16 C 1.50697 * 109.47586 * 66.04719 * 15 5 4 17 17 N 1.30277 * 126.28376 * 90.01994 * 16 15 5 18 18 N 1.28669 * 109.38299 * 179.97438 * 17 16 15 19 19 C 1.30273 * 109.37705 * 359.97438 * 18 17 16 20 20 C 1.50704 * 126.27977 * 180.02562 * 19 18 17 21 21 C 1.53005 * 109.47246 * 299.97814 * 20 19 18 22 22 C 1.53001 * 109.47090 * 59.97301 * 20 19 18 23 23 O 1.34359 * 126.28310 * 269.71790 * 16 15 5 24 24 H 1.09005 * 109.47216 * 299.99518 * 1 2 3 25 25 H 1.08993 * 109.47558 * 59.99676 * 1 2 3 26 26 H 1.09006 * 109.47267 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47176 * 60.00766 * 3 2 1 28 28 H 1.09000 * 109.47227 * 300.00233 * 3 2 1 29 29 H 1.09003 * 109.47185 * 307.06290 * 4 3 2 30 30 H 1.09000 * 109.47425 * 187.06033 * 4 3 2 31 31 H 1.09005 * 109.46705 * 59.70052 * 6 5 4 32 32 H 1.09000 * 109.47231 * 179.68947 * 6 5 4 33 33 H 0.97004 * 120.00245 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.47210 * 186.04547 * 15 5 4 35 35 H 1.09001 * 109.47511 * 306.04740 * 15 5 4 36 36 H 1.08999 * 109.47432 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.47070 * 59.99576 * 21 20 19 38 38 H 1.08994 * 109.47344 * 179.97438 * 21 20 19 39 39 H 1.09008 * 109.46670 * 299.99936 * 21 20 19 40 40 H 1.08999 * 109.47236 * 300.00430 * 22 20 19 41 41 H 1.09000 * 109.46819 * 60.00148 * 22 20 19 42 42 H 1.09002 * 109.47068 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 3.9804 0.6082 -1.2764 6 6 3.6004 -0.8073 -1.3755 7 6 4.2433 -1.5799 -0.2527 8 1 4.9365 -1.0879 0.4136 9 6 3.9467 -2.9147 -0.0760 10 7 3.1022 -3.5136 -0.8870 11 14 4.7442 -3.8725 1.3154 12 1 3.8961 -3.7788 2.5307 13 1 4.8852 -5.2965 0.9188 14 1 6.0855 -3.3036 1.6028 15 6 3.4538 1.3755 -2.4130 16 6 4.0603 2.7551 -2.4120 17 7 5.1597 3.1143 -3.0116 18 7 5.3738 4.3648 -2.7975 19 6 4.4180 4.8460 -2.0546 20 6 4.2913 6.2694 -1.5759 21 6 5.5129 6.6337 -0.7298 22 6 4.2081 7.2075 -2.7817 23 8 3.5635 3.8416 -1.7974 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.6886 1.8464 0.8901 28 1 1.6885 1.8464 -0.8900 29 1 3.8490 0.5385 0.8192 30 1 3.9781 2.1727 0.1257 31 1 2.5164 -0.8982 -1.3051 32 1 3.9371 -1.2079 -2.3317 33 1 2.8932 -4.4526 -0.7625 34 1 3.7080 0.8676 -3.3433 35 1 2.3701 1.4551 -2.3268 36 1 3.3886 6.3712 -0.9734 37 1 6.4156 6.5319 -1.3322 38 1 5.4215 7.6632 -0.3839 39 1 5.5722 5.9653 0.1293 40 1 5.1107 7.1058 -3.3842 41 1 3.3378 6.9480 -3.3845 42 1 4.1169 8.2370 -2.4355 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072690205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:44 Heat of formation + Delta-G solvation = 1.214867 kcal Electronic energy + Delta-G solvation = -23263.798488 eV Core-core repulsion = 19860.758048 eV Total energy + Delta-G solvation = -3403.040440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.00475 -38.35911 -36.28409 -35.89616 -35.76801 -32.61397 -30.94176 -29.11789 -27.61090 -27.51600 -26.02829 -24.91597 -24.22340 -22.93969 -22.02326 -20.89391 -19.77904 -17.20225 -17.11384 -16.41231 -16.13302 -15.97513 -15.31047 -14.99354 -14.67886 -14.45493 -14.09342 -14.04654 -13.50578 -13.38511 -12.52628 -12.36888 -12.19994 -12.13625 -12.02249 -11.76479 -11.61848 -11.55858 -11.50665 -11.45774 -11.16650 -11.14119 -10.72325 -10.69113 -10.61465 -10.24945 -9.91537 -9.35258 -9.10721 -9.06334 -8.34056 -7.29509 -5.92700 -3.90777 1.35439 2.38949 2.62985 3.37543 3.43479 3.47749 3.89649 4.29748 4.40131 4.51631 4.68459 4.69534 4.85484 4.92062 5.22798 5.30809 5.37414 5.44701 5.44815 5.49975 5.52563 5.59755 5.60898 5.69551 5.72669 5.77924 5.79630 5.89798 5.90348 5.97084 6.01999 6.04650 6.12906 6.64242 7.18170 7.58093 7.75071 7.79568 7.99303 8.20242 8.54453 8.57016 9.12675 9.70351 11.18727 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022732 B = 0.004298 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.436038 B = 6513.205939 C = 6943.225985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.343 6.343 3 C 0.024 3.976 4 C 0.059 3.941 5 N -0.523 5.523 6 C 0.184 3.816 7 C -0.496 4.496 8 H 0.058 0.942 9 C 0.061 3.939 10 N -0.896 5.896 11 Si 0.892 3.108 12 H -0.283 1.283 13 H -0.288 1.288 14 H -0.275 1.275 15 C 0.138 3.862 16 C 0.192 3.808 17 N -0.280 5.280 18 N -0.284 5.284 19 C 0.148 3.852 20 C 0.007 3.993 21 C -0.145 4.145 22 C -0.144 4.144 23 O -0.229 6.229 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.024 0.976 33 H 0.258 0.742 34 H 0.116 0.884 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.070 18.856 -0.105 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.261 6.261 3 C -0.054 4.054 4 C -0.069 4.069 5 N -0.248 5.248 6 C 0.060 3.940 7 C -0.535 4.535 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.535 5.535 11 Si 0.721 3.279 12 H -0.209 1.209 13 H -0.214 1.214 14 H -0.200 1.200 15 C 0.008 3.992 16 C -0.020 4.020 17 N -0.126 5.126 18 N -0.131 5.131 19 C -0.064 4.064 20 C -0.013 4.013 21 C -0.203 4.203 22 C -0.202 4.202 23 O -0.108 6.108 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.134 0.866 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.431 18.429 -0.884 18.609 hybrid contribution -1.817 -0.388 1.505 2.391 sum -4.248 18.041 0.622 18.545 Atomic orbital electron populations 1.22697 0.83414 1.02443 0.98400 1.88472 1.17591 1.25412 1.94613 1.23291 0.97069 0.86153 0.98920 1.22257 0.89816 0.99412 0.95447 1.62419 1.57975 1.05866 0.98549 1.20118 0.97612 0.78598 0.97633 1.20963 1.25052 0.94288 1.13152 0.92350 1.24846 0.95273 0.97580 0.96283 1.69948 1.34738 1.11170 1.37690 0.86592 0.79729 0.79154 0.82455 1.20907 1.21424 1.19970 1.20692 0.96643 0.82286 0.99589 1.28340 0.91624 0.90667 0.91346 1.74430 1.13261 1.04102 1.20843 1.74302 1.21773 1.02628 1.14386 1.27885 0.86991 0.93301 0.98228 1.19652 1.01614 0.82015 0.98036 1.21865 0.96831 1.01962 0.99639 1.21860 1.03336 0.98369 0.96640 1.84793 1.47708 1.18461 1.59841 0.95225 0.95213 0.89764 0.94177 0.94244 0.87790 0.92158 0.93942 0.95776 0.93208 0.86557 0.91897 0.88432 0.91026 0.90818 0.92010 0.91037 0.92240 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.34 -6.93 7.58 -35.23 -0.27 -7.20 16 3 C 0.02 0.42 5.70 37.16 0.21 0.63 16 4 C 0.06 1.15 5.46 -3.82 -0.02 1.12 16 5 N -0.52 -11.11 4.74 -237.52 -1.13 -12.24 16 6 C 0.18 4.62 4.29 -4.98 -0.02 4.60 16 7 C -0.50 -13.70 8.21 -34.44 -0.28 -13.99 16 8 H 0.06 1.62 6.98 -52.48 -0.37 1.26 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 11 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 15 C 0.14 2.47 5.23 -4.98 -0.03 2.44 16 16 C 0.19 3.37 7.04 -12.94 -0.09 3.28 16 17 N -0.28 -5.33 12.22 32.55 0.40 -4.94 16 18 N -0.28 -4.85 12.22 32.55 0.40 -4.45 16 19 C 0.15 2.10 6.99 -12.94 -0.09 2.01 16 20 C 0.01 0.06 3.39 -91.77 -0.31 -0.25 16 21 C -0.15 -1.21 9.18 37.16 0.34 -0.86 16 22 C -0.14 -1.11 9.18 37.16 0.34 -0.77 16 23 O -0.23 -3.60 10.50 5.40 0.06 -3.55 16 24 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.64 5.79 -51.93 -0.30 0.34 16 29 H 0.10 2.23 6.33 -51.93 -0.33 1.91 16 30 H 0.06 1.08 7.17 -51.93 -0.37 0.70 16 31 H 0.04 1.12 5.29 -51.93 -0.27 0.85 16 32 H 0.02 0.65 8.05 -51.93 -0.42 0.24 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.12 2.04 8.01 -51.93 -0.42 1.62 16 35 H 0.06 1.05 5.71 -51.93 -0.30 0.75 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -32.13 343.75 -5.14 -37.27 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -6.56 Total: -2.75 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 1.06 Total: 1.39 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.41 Total: -47.11 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.21 Total: -10.75 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.13 -5.14 -37.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.484 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds