Wall clock time and date at job start Tue Mar 31 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47372 * 2 1 4 4 C 1.50698 * 109.47032 * 179.97438 * 3 2 1 5 5 N 1.29945 * 126.28999 * 90.02665 * 4 3 2 6 6 O 1.21293 * 110.25319 * 179.97438 * 5 4 3 7 7 C 1.33647 * 109.81400 * 359.97438 * 6 5 4 8 8 C 1.50702 * 126.55245 * 179.97438 * 7 6 5 9 9 N 1.46893 * 109.47254 * 275.75056 * 8 7 6 10 10 C 1.46899 * 110.99928 * 176.48515 * 9 8 7 11 11 C 1.50704 * 109.47298 * 189.99872 * 10 9 8 12 12 H 1.08002 * 119.99711 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00278 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99850 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00167 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46917 * 89.99679 * 15 13 11 17 17 H 1.48500 * 109.47289 * 209.99920 * 15 13 11 18 18 H 1.48505 * 109.46980 * 330.00194 * 15 13 11 19 19 C 1.46903 * 111.00130 * 300.44269 * 9 8 7 20 20 C 1.52995 * 109.46977 * 293.79551 * 19 9 8 21 21 O 1.42897 * 109.47225 * 68.29562 * 20 19 9 22 22 C 1.42904 * 114.00087 * 179.97438 * 21 20 19 23 23 N 1.31135 * 106.89084 * 359.76844 * 7 6 5 24 24 H 1.09006 * 109.46552 * 59.99583 * 1 2 3 25 25 H 1.08994 * 109.46918 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46935 * 300.00498 * 1 2 3 27 27 H 1.09004 * 109.46735 * 239.99897 * 2 1 3 28 28 H 1.08995 * 109.46803 * 120.00030 * 2 1 3 29 29 H 1.08995 * 109.47181 * 299.99799 * 3 2 1 30 30 H 1.08998 * 109.46838 * 60.00209 * 3 2 1 31 31 H 1.09000 * 109.47056 * 35.75155 * 8 7 6 32 32 H 1.09000 * 109.46768 * 155.75009 * 8 7 6 33 33 H 1.09000 * 109.47440 * 310.00403 * 10 9 8 34 34 H 1.09004 * 109.46615 * 70.00552 * 10 9 8 35 35 H 0.96988 * 120.00037 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.46885 * 53.79519 * 19 9 8 37 37 H 1.08995 * 109.46974 * 173.79274 * 19 9 8 38 38 H 1.09000 * 109.47013 * 188.30006 * 20 19 9 39 39 H 1.09005 * 109.47446 * 308.29759 * 20 19 9 40 40 H 1.08996 * 109.47490 * 300.00531 * 22 21 20 41 41 H 1.09005 * 109.46375 * 60.00550 * 22 21 20 42 42 H 1.09005 * 109.47057 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.3166 1.4427 -1.0464 6 8 5.4822 1.4430 -0.7109 7 6 5.5697 1.4435 0.6227 8 6 6.8365 1.4435 1.4391 9 7 7.3229 0.0655 1.5883 10 6 8.6027 0.0341 2.3087 11 6 9.1897 -1.3516 2.2298 12 1 8.6648 -2.1309 1.6973 13 6 10.3969 -1.6246 2.8374 14 7 11.0359 -0.6757 3.4863 15 14 11.1249 -3.3421 2.7390 16 1 11.9896 -3.4449 1.5361 17 1 11.9349 -3.6068 3.9551 18 1 10.0287 -4.3398 2.6473 19 6 6.3217 -0.7768 2.2563 20 6 6.1363 -0.3017 3.6988 21 8 5.5123 0.9838 3.7004 22 6 5.2917 1.5212 5.0061 23 7 4.3426 1.4486 1.0851 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6769 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 7.5938 2.0436 0.9346 32 1 6.6344 1.8661 2.4233 33 1 9.2920 0.7470 1.8563 34 1 8.4383 0.3001 3.3530 35 1 11.8853 -0.8676 3.9134 36 1 5.3728 -0.7039 1.7250 37 1 6.6599 -1.8129 2.2556 38 1 5.5081 -1.0113 4.2371 39 1 7.1086 -0.2341 4.1869 40 1 4.6457 0.8493 5.5712 41 1 6.2463 1.6265 5.5216 42 1 4.8153 2.4980 4.9213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072690723.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:41 Heat of formation + Delta-G solvation = 25.006385 kcal Electronic energy + Delta-G solvation = -23268.596481 eV Core-core repulsion = 19866.587719 eV Total energy + Delta-G solvation = -3402.008762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.14917 -38.40366 -36.34570 -36.06127 -34.27626 -32.80710 -31.92332 -29.28156 -28.03514 -27.73060 -26.12864 -24.78704 -23.25208 -23.10289 -22.08779 -20.88260 -19.60208 -17.67799 -16.98828 -16.43992 -16.08445 -16.00480 -15.35824 -14.93241 -14.68803 -14.54057 -14.07441 -13.92606 -13.60054 -13.56967 -12.61298 -12.36943 -12.25525 -11.90244 -11.78950 -11.68834 -11.60233 -11.43568 -11.30386 -11.16041 -10.92760 -10.83009 -10.79501 -10.68951 -10.53466 -10.40444 -10.00681 -9.55755 -9.35320 -9.00683 -8.49189 -7.36157 -6.10264 -4.11879 1.54495 2.59419 3.28715 3.29655 3.35334 3.38424 3.91455 4.22414 4.33206 4.39162 4.84268 4.86887 4.97951 5.05609 5.26183 5.35264 5.47546 5.54579 5.58362 5.60278 5.61298 5.74401 5.79924 5.83591 5.88161 5.90850 5.92072 6.02615 6.10567 6.19005 6.23960 6.34041 6.42881 6.63491 7.10637 7.23611 7.59623 7.68382 7.91966 8.03874 8.38544 8.58945 8.94996 9.52743 11.00304 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020036 B = 0.004328 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.118116 B = 6468.297842 C = 6757.666315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.023 4.023 4 C 0.157 3.843 5 N -0.398 5.398 6 O 0.075 5.925 7 C 0.215 3.785 8 C 0.129 3.871 9 N -0.526 5.526 10 C 0.190 3.810 11 C -0.509 4.509 12 H 0.064 0.936 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.067 3.933 20 C 0.020 3.980 21 O -0.370 6.370 22 C 0.031 3.969 23 N -0.464 5.464 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.035 0.965 34 H 0.006 0.994 35 H 0.262 0.738 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.032 0.968 41 H 0.036 0.964 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.804 4.385 -1.362 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.062 4.062 4 C -0.116 4.116 5 N -0.107 5.107 6 O 0.018 5.982 7 C -0.006 4.006 8 C -0.001 4.001 9 N -0.252 5.252 10 C 0.066 3.934 11 C -0.548 4.548 12 H 0.082 0.918 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.062 4.062 20 C -0.058 4.058 21 O -0.289 6.289 22 C -0.066 4.066 23 N -0.198 5.198 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.053 0.947 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.213 4.342 -2.413 16.957 hybrid contribution 0.649 -0.755 1.169 1.536 sum -15.564 3.588 -1.244 16.021 Atomic orbital electron populations 1.21743 0.95021 1.01967 1.01903 1.21481 0.96074 0.95248 1.02972 1.19909 0.83459 0.98809 1.04026 1.25847 1.00028 1.01439 0.84320 1.74573 0.89780 1.22005 1.24390 1.85294 1.21855 1.65463 1.25626 1.28975 0.97047 0.93346 0.81226 1.20956 0.86811 0.94751 0.97540 1.62431 1.05007 1.05373 1.52353 1.19858 0.83236 0.98506 0.91799 1.21102 1.04978 0.95436 1.33247 0.91802 1.24952 0.96851 0.97305 0.95257 1.69945 1.16014 1.32508 1.35133 0.86504 0.79186 0.84294 0.77475 1.20561 1.21345 1.19868 1.22184 0.94963 0.98916 0.90116 1.23412 0.97372 0.84457 1.00536 1.88056 1.80981 1.33729 1.26123 1.22638 0.99424 0.98532 0.85993 1.72097 0.99505 1.20050 1.28120 0.92633 0.92401 0.92441 0.91738 0.91191 0.89697 0.89005 0.88500 0.87775 0.94704 0.97680 0.92828 0.92152 0.88528 0.94251 0.91153 0.94933 0.94523 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 3 C -0.02 -0.27 5.84 -27.88 -0.16 -0.43 16 4 C 0.16 2.45 7.47 -156.38 -1.17 1.28 16 5 N -0.40 -6.84 12.16 30.90 0.38 -6.47 16 6 O 0.07 1.34 11.31 18.09 0.20 1.54 16 7 C 0.21 3.75 6.64 -13.05 -0.09 3.67 16 8 C 0.13 2.28 5.06 -4.98 -0.03 2.26 16 9 N -0.53 -10.75 4.74 -237.52 -1.13 -11.88 16 10 C 0.19 4.54 4.45 -4.97 -0.02 4.51 16 11 C -0.51 -13.38 8.54 -34.44 -0.29 -13.67 16 12 H 0.06 1.68 7.10 -52.49 -0.37 1.31 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -25.25 13.29 55.43 0.74 -24.52 16 15 Si 0.90 20.84 29.54 -169.99 -5.02 15.81 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 19 C 0.07 1.27 5.46 -3.82 -0.02 1.25 16 20 C 0.02 0.35 5.75 37.15 0.21 0.57 16 21 O -0.37 -6.18 6.71 -35.23 -0.24 -6.41 16 22 C 0.03 0.42 11.01 101.05 1.11 1.53 16 23 N -0.46 -7.90 10.20 -9.87 -0.10 -8.00 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 1.59 8.06 -51.93 -0.42 1.17 16 32 H 0.11 1.86 5.33 -51.93 -0.28 1.58 16 33 H 0.03 0.89 8.02 -51.93 -0.42 0.47 16 34 H 0.01 0.14 5.77 -51.93 -0.30 -0.16 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.06 1.14 6.41 -51.93 -0.33 0.80 16 37 H 0.10 1.92 6.92 -51.93 -0.36 1.56 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.40 5.82 -51.93 -0.30 1.10 16 40 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -28.86 342.09 -6.92 -35.78 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.56 Total: -1.21 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -0.34 Total: 0.19 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.12 Total: -50.87 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.03 Total: -4.87 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.86 -6.92 -35.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690723.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.788 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds