Wall clock time and date at job start Tue Mar 31 2020 06:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 119.99568 * 2 1 4 4 H 1.48496 * 109.47092 * 269.99341 * 3 2 1 5 5 H 1.48496 * 109.47769 * 29.99884 * 3 2 1 6 6 H 1.48509 * 109.46792 * 149.99858 * 3 2 1 7 7 C 1.38798 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99964 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00029 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99823 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46987 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46851 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.46720 * 179.97438 * 12 11 10 14 14 C 1.46872 * 111.00142 * 293.95286 * 13 12 11 15 15 C 1.53021 * 109.58568 * 174.28464 * 14 13 12 16 16 C 1.53142 * 109.32386 * 59.06581 * 15 14 13 17 17 C 1.53080 * 109.15814 * 302.35899 * 16 15 14 18 18 H 1.08999 * 109.49389 * 297.89334 * 17 16 15 19 19 C 1.52815 * 109.68477 * 177.58804 * 17 16 15 20 20 C 1.53021 * 109.41202 * 180.02562 * 19 17 16 21 21 C 1.52987 * 109.52847 * 59.97761 * 20 19 17 22 22 C 1.53021 * 109.54699 * 300.16263 * 21 20 19 23 23 C 1.46802 * 110.99673 * 169.81960 * 13 12 11 24 24 H 1.09002 * 109.44691 * 66.01782 * 23 13 12 25 25 H 0.96996 * 120.00441 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47031 * 60.00055 * 10 9 7 27 27 H 1.08998 * 109.47575 * 300.00416 * 10 9 7 28 28 H 1.08995 * 109.46915 * 60.00094 * 11 10 9 29 29 H 1.09000 * 109.46938 * 299.99961 * 11 10 9 30 30 H 1.08997 * 109.47135 * 60.00449 * 12 11 10 31 31 H 1.08998 * 109.47358 * 299.99967 * 12 11 10 32 32 H 1.08998 * 109.45326 * 54.24832 * 14 13 12 33 33 H 1.08998 * 109.45177 * 294.32029 * 14 13 12 34 34 H 1.09007 * 109.50035 * 299.11062 * 15 14 13 35 35 H 1.09001 * 109.52231 * 179.03553 * 15 14 13 36 36 H 1.09002 * 109.53293 * 62.28159 * 16 15 14 37 37 H 1.09002 * 109.53758 * 182.43537 * 16 15 14 38 38 H 1.09003 * 109.43871 * 60.11851 * 19 17 16 39 39 H 1.08994 * 109.52138 * 300.08917 * 19 17 16 40 40 H 1.09007 * 109.46102 * 299.96685 * 20 19 17 41 41 H 1.08996 * 109.45351 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.45680 * 180.14043 * 21 20 19 43 43 H 1.09000 * 109.44405 * 60.18140 * 21 20 19 44 44 H 1.08998 * 109.48406 * 299.94389 * 22 21 20 45 45 H 1.08999 * 109.48051 * 179.90635 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6528 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9794 -5.3242 -0.0001 12 6 3.1515 -6.3076 0.0005 13 7 2.6364 -7.6834 0.0005 14 6 1.9300 -7.9809 1.2534 15 6 1.2864 -9.3663 1.1628 16 6 2.3732 -10.4141 0.9054 17 6 3.1227 -10.0551 -0.3802 18 1 2.4311 -10.0764 -1.2224 19 6 4.2496 -11.0598 -0.6167 20 6 4.9948 -10.6949 -1.9024 21 6 5.5836 -9.2891 -1.7708 22 6 4.4567 -8.2825 -1.5293 23 6 3.7153 -8.6491 -0.2411 24 1 4.4119 -8.6323 0.5972 25 1 -0.4850 0.8400 -0.0004 26 1 3.1246 -3.7312 0.8906 27 1 3.1246 -3.7313 -0.8894 28 1 1.3711 -5.4840 -0.8903 29 1 1.3706 -5.4846 0.8897 30 1 3.7595 -6.1477 0.8910 31 1 3.7608 -6.1474 -0.8890 32 1 1.1563 -7.2315 1.4207 33 1 2.6376 -7.9629 2.0822 34 1 0.5665 -9.3803 0.3444 35 1 0.7769 -9.5932 2.0993 36 1 3.0714 -10.4282 1.7424 37 1 1.9140 -11.3967 0.7973 38 1 3.8289 -12.0608 -0.7128 39 1 4.9418 -11.0356 0.2249 40 1 4.3020 -10.7211 -2.7436 41 1 5.7990 -11.4109 -2.0715 42 1 6.1120 -9.0294 -2.6881 43 1 6.2790 -9.2640 -0.9318 44 1 3.7617 -8.3065 -2.3686 45 1 4.8775 -7.2816 -1.4340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074981030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:46 Heat of formation + Delta-G solvation = -38.853839 kcal Electronic energy + Delta-G solvation = -20506.503774 eV Core-core repulsion = 17648.019039 eV Total energy + Delta-G solvation = -2858.484735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21067 -36.55048 -34.69056 -32.44209 -32.23996 -30.26898 -29.53539 -26.17102 -25.41723 -23.99627 -22.97584 -21.95768 -20.36251 -19.95501 -19.84382 -17.44008 -16.06327 -15.44296 -15.20495 -14.95613 -14.78218 -14.45029 -14.33351 -14.15954 -13.63667 -13.35670 -13.26991 -12.84551 -12.68983 -12.23775 -12.03206 -11.74873 -11.63499 -11.40212 -11.27540 -11.17698 -11.06544 -11.02850 -10.82051 -10.76666 -10.67391 -10.59563 -10.23376 -10.05018 -9.80874 -9.46551 -9.03222 -8.26428 -8.21797 -6.49096 -6.20059 -3.89835 3.23251 3.23869 3.30632 3.56556 3.90099 4.25465 4.43503 4.50350 4.63518 4.84016 4.98662 5.04809 5.08722 5.11586 5.15772 5.22008 5.27498 5.33948 5.40969 5.42709 5.48814 5.57407 5.61445 5.65690 5.73538 5.75932 5.82664 5.87584 5.88888 5.92581 5.96001 5.99085 6.02934 6.06670 6.16839 6.18728 6.24729 6.36251 6.43112 6.65806 6.81856 7.20158 7.23331 7.63113 8.39365 9.26144 10.88155 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030756 B = 0.003064 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.160273 B = 9136.100060 C = 9815.583647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.072 0.928 9 S -0.133 6.133 10 C -0.112 4.112 11 C -0.093 4.093 12 C 0.055 3.945 13 N -0.533 5.533 14 C 0.052 3.948 15 C -0.117 4.117 16 C -0.116 4.116 17 C -0.078 4.078 18 H 0.079 0.921 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.118 4.118 23 C 0.093 3.907 24 H 0.035 0.965 25 H 0.267 0.733 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.346 -22.706 -0.454 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.095 5.905 10 C -0.261 4.261 11 C -0.131 4.131 12 C -0.074 4.074 13 N -0.257 5.257 14 C -0.076 4.076 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.097 4.097 18 H 0.097 0.903 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.015 4.015 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.717 -22.812 -0.823 23.794 hybrid contribution 2.474 1.442 0.730 2.955 sum 9.191 -21.370 -0.092 23.263 Atomic orbital electron populations 1.70024 1.05908 1.27270 1.47366 1.25013 0.95075 0.99060 0.94675 0.86175 0.79439 0.81605 0.78356 1.20272 1.20777 1.19719 1.22696 0.94505 0.90861 1.58320 0.91024 1.84625 1.09643 0.99353 1.96830 1.23234 1.02772 0.97508 1.02614 1.21278 0.97022 0.91808 1.03036 1.22271 0.97207 0.87130 1.00749 1.61907 1.26899 1.02220 1.34675 1.22145 0.98033 0.97535 0.89887 1.21580 0.97969 0.93986 1.01899 1.21638 0.97740 0.98628 0.97354 1.21186 0.96702 0.93418 0.98403 0.90307 1.21546 0.97281 0.98473 0.97789 1.21539 0.99568 0.96610 0.97968 1.21524 0.97683 0.94840 1.01538 1.21725 0.97272 0.98784 0.97802 1.21607 0.91341 0.91873 0.96697 0.94697 0.92342 0.92459 0.92211 0.90825 0.91772 0.95281 0.90287 0.89907 0.95331 0.91023 0.91703 0.92526 0.92010 0.91946 0.92241 0.91844 0.92250 0.91864 0.92282 0.90914 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.52 -15.02 9.50 30.94 0.29 -14.72 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.13 -3.54 21.44 -107.50 -2.30 -5.85 16 10 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 11 C -0.09 -1.58 5.15 -26.73 -0.14 -1.71 16 12 C 0.06 0.78 4.68 -3.82 -0.02 0.76 16 13 N -0.53 -6.78 4.50 -226.56 -1.02 -7.80 16 14 C 0.05 0.62 5.29 -3.83 -0.02 0.60 16 15 C -0.12 -1.17 6.09 -26.65 -0.16 -1.33 16 16 C -0.12 -1.04 5.29 -26.62 -0.14 -1.19 16 17 C -0.08 -0.74 2.14 -90.56 -0.19 -0.93 16 18 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.11 -0.89 5.21 -26.82 -0.14 -1.03 16 20 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 21 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 22 C -0.12 -1.22 4.84 -26.68 -0.13 -1.35 16 23 C 0.09 1.02 1.70 -67.62 -0.11 0.91 16 24 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.06 1.18 8.14 -51.91 -0.42 0.76 16 27 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.06 1.10 6.44 -51.93 -0.33 0.77 16 30 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 31 H 0.08 1.09 5.66 -51.93 -0.29 0.79 16 32 H 0.08 1.07 6.23 -51.93 -0.32 0.75 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.73 6.12 -51.93 -0.32 0.41 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -30.43 350.03 -11.73 -42.16 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -8.42 Total: -2.56 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -0.96 Total: -22.40 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: -0.29 Total: -33.38 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.43 -11.73 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.305 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds