Wall clock time and date at job start Tue Mar 31 2020 06:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47611 * 270.00584 * 3 2 1 5 5 H 1.48501 * 109.46999 * 30.00455 * 3 2 1 6 6 H 1.48498 * 109.47391 * 150.00031 * 3 2 1 7 7 C 1.38800 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99619 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99953 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46705 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46844 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47042 * 179.97438 * 12 11 10 14 14 C 1.46857 * 110.99703 * 45.81998 * 13 12 11 15 15 C 1.53031 * 109.55886 * 185.73647 * 14 13 12 16 16 C 1.53125 * 109.29427 * 300.89747 * 15 14 13 17 17 C 1.53153 * 109.02659 * 57.74855 * 16 15 14 18 18 H 1.08995 * 109.46546 * 182.10365 * 17 16 15 19 19 C 1.53016 * 109.40014 * 61.78061 * 17 16 15 20 20 C 1.52986 * 109.50812 * 180.45890 * 19 17 16 21 21 C 1.53010 * 109.47186 * 60.02732 * 20 19 17 22 22 C 1.53002 * 109.44376 * 299.97769 * 21 20 19 23 23 C 1.46839 * 110.99870 * 169.99984 * 13 12 11 24 24 H 1.08994 * 109.44478 * 293.97421 * 23 13 12 25 25 H 0.97001 * 119.99816 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47440 * 59.99918 * 10 9 7 27 27 H 1.09004 * 109.46985 * 299.99487 * 10 9 7 28 28 H 1.08995 * 109.47531 * 60.00250 * 11 10 9 29 29 H 1.08991 * 109.47064 * 299.99315 * 11 10 9 30 30 H 1.09005 * 109.46550 * 59.99977 * 12 11 10 31 31 H 1.08998 * 109.47202 * 300.00424 * 12 11 10 32 32 H 1.08995 * 109.45861 * 305.76706 * 14 13 12 33 33 H 1.09004 * 109.45489 * 65.72870 * 14 13 12 34 34 H 1.08998 * 109.49632 * 60.84228 * 15 14 13 35 35 H 1.08997 * 109.49824 * 180.95023 * 15 14 13 36 36 H 1.09006 * 109.53017 * 177.57713 * 16 15 14 37 37 H 1.08998 * 109.53205 * 297.79946 * 16 15 14 38 38 H 1.09003 * 109.46785 * 300.46607 * 19 17 16 39 39 H 1.09006 * 109.46568 * 60.44936 * 19 17 16 40 40 H 1.09006 * 109.46542 * 300.03405 * 20 19 17 41 41 H 1.09002 * 109.48267 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.47799 * 179.97438 * 21 20 19 43 43 H 1.09005 * 109.47265 * 59.97139 * 21 20 19 44 44 H 1.09004 * 109.46263 * 180.02562 * 22 21 20 45 45 H 1.08995 * 109.46908 * 299.99377 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9792 -5.3243 -0.0012 12 6 3.1513 -6.3078 -0.0018 13 7 2.6361 -7.6835 -0.0018 14 6 1.5563 -7.8410 -0.9847 15 6 0.9488 -9.2399 -0.8585 16 6 2.0392 -10.2883 -1.0965 17 6 3.1698 -10.0710 -0.0865 18 1 3.9671 -10.7902 -0.2735 19 6 2.6270 -10.2572 1.3320 20 6 3.7519 -10.0293 2.3435 21 6 4.2963 -8.6077 2.1893 22 6 4.8401 -8.4215 0.7714 23 6 3.7158 -8.6496 -0.2405 24 1 4.1042 -8.5176 -1.2503 25 1 -0.4850 0.8401 0.0004 26 1 3.1244 -3.7314 0.8894 27 1 3.1244 -3.7314 -0.8906 28 1 1.3709 -5.4841 -0.8914 29 1 1.3705 -5.4846 0.8886 30 1 3.7600 -6.1481 0.8882 31 1 3.7598 -6.1472 -0.8918 32 1 0.7857 -7.0925 -0.8005 33 1 1.9579 -7.7091 -1.9894 34 1 0.5335 -9.3673 0.1412 35 1 0.1589 -9.3617 -1.5996 36 1 1.6202 -11.2861 -0.9651 37 1 2.4285 -10.1858 -2.1094 38 1 1.8263 -9.5397 1.5116 39 1 2.2388 -11.2698 1.4424 40 1 4.5529 -10.7465 2.1636 41 1 3.3649 -10.1625 3.3537 42 1 5.0975 -8.4451 2.9102 43 1 3.4952 -7.8904 2.3685 44 1 5.2284 -7.4089 0.6613 45 1 5.6410 -9.1388 0.5924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074981031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:49 Heat of formation + Delta-G solvation = -32.727024 kcal Electronic energy + Delta-G solvation = -20884.227089 eV Core-core repulsion = 18026.008033 eV Total energy + Delta-G solvation = -2858.219056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.44341 -36.12580 -34.73259 -32.43856 -32.15636 -30.19545 -29.29134 -26.21316 -25.47618 -24.06098 -23.13803 -22.04764 -20.65845 -20.32593 -18.32836 -17.43250 -15.97339 -15.64979 -15.21580 -15.09828 -14.79057 -14.56452 -14.20145 -13.98600 -13.44951 -13.27889 -12.94626 -12.80462 -12.45498 -12.39730 -12.16433 -11.89008 -11.63625 -11.41477 -11.23705 -11.07972 -11.05367 -10.81259 -10.77297 -10.69441 -10.54206 -10.46317 -10.06851 -10.02312 -9.82940 -9.47773 -9.04211 -8.27786 -8.14753 -6.50539 -6.21185 -3.91067 3.22519 3.23422 3.30108 3.56904 3.95426 4.24402 4.52546 4.60674 4.69366 4.96288 4.99091 5.14385 5.14899 5.20403 5.23485 5.32572 5.36125 5.42862 5.44685 5.50595 5.55964 5.58239 5.66344 5.72957 5.75120 5.77737 5.83934 5.87619 5.95217 5.96451 6.03474 6.09066 6.16694 6.22505 6.25912 6.28408 6.37005 6.38401 6.53154 6.62975 6.77589 7.21357 7.24260 7.62162 8.38328 9.25165 10.87036 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030835 B = 0.003280 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.846961 B = 8533.450564 C = 9003.888989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.072 0.928 9 S -0.133 6.133 10 C -0.112 4.112 11 C -0.100 4.100 12 C 0.059 3.941 13 N -0.525 5.525 14 C 0.047 3.953 15 C -0.118 4.118 16 C -0.117 4.117 17 C -0.077 4.077 18 H 0.067 0.933 19 C -0.107 4.107 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.115 4.115 23 C 0.091 3.909 24 H 0.035 0.965 25 H 0.267 0.733 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.087 0.913 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.690 -21.763 0.431 22.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.095 5.905 10 C -0.261 4.261 11 C -0.139 4.139 12 C -0.070 4.070 13 N -0.250 5.250 14 C -0.081 4.081 15 C -0.156 4.156 16 C -0.155 4.155 17 C -0.096 4.096 18 H 0.085 0.915 19 C -0.145 4.145 20 C -0.152 4.152 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.018 4.018 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.210 -21.928 0.895 22.557 hybrid contribution 2.306 1.500 -0.923 2.901 sum 7.516 -20.429 -0.028 21.767 Atomic orbital electron populations 1.70025 1.05911 1.27278 1.47343 1.25010 0.95074 0.99061 0.94645 0.86174 0.79468 0.81596 0.78339 1.20307 1.20754 1.19687 1.22694 0.94504 0.90836 1.58368 0.91016 1.84603 1.09643 0.99412 1.96841 1.23227 1.02781 0.97410 1.02673 1.21440 0.97170 0.92256 1.02996 1.22214 0.97240 0.86938 1.00567 1.61980 1.09971 1.03596 1.49453 1.22232 0.94926 0.97730 0.93183 1.21635 0.97449 0.94087 1.02414 1.21641 0.96365 0.98933 0.98548 1.21165 0.97242 0.95417 0.95759 0.91494 1.21519 0.98748 1.00872 0.93319 1.21470 0.98017 0.96871 0.98811 1.21433 1.00619 0.97487 0.95518 1.21618 0.96610 1.01547 0.95471 1.21571 0.91197 0.92292 0.96704 0.94716 0.92337 0.92145 0.92454 0.91476 0.90792 0.90520 0.95294 0.89428 0.95291 0.90817 0.91860 0.92047 0.92522 0.90082 0.93117 0.92983 0.92446 0.92957 0.90395 0.91792 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.19 13.22 55.49 0.73 -25.45 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.95 9.50 30.94 0.29 -14.66 16 8 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 9 S -0.13 -3.52 21.44 -107.50 -2.30 -5.82 16 10 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 11 C -0.10 -1.65 4.47 -26.73 -0.12 -1.77 16 12 C 0.06 0.81 4.27 -3.82 -0.02 0.80 16 13 N -0.52 -6.35 3.15 -226.71 -0.71 -7.06 16 14 C 0.05 0.56 4.85 -3.83 -0.02 0.54 16 15 C -0.12 -1.17 5.73 -26.65 -0.15 -1.32 16 16 C -0.12 -1.06 5.52 -26.59 -0.15 -1.21 16 17 C -0.08 -0.72 2.51 -90.51 -0.23 -0.95 16 18 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 19 C -0.11 -1.00 4.74 -26.73 -0.13 -1.13 16 20 C -0.11 -1.04 5.92 -26.73 -0.16 -1.20 16 21 C -0.11 -1.14 5.68 -26.73 -0.15 -1.29 16 22 C -0.11 -1.16 4.92 -26.75 -0.13 -1.29 16 23 C 0.09 0.98 1.99 -67.74 -0.13 0.84 16 24 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 26 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 27 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 28 H 0.07 1.11 6.21 -51.93 -0.32 0.79 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.04 6.44 -51.93 -0.33 0.71 16 31 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.09 1.13 5.82 -51.93 -0.30 0.83 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.76 6.53 -51.93 -0.34 0.42 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.88 5.94 -51.93 -0.31 0.58 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.92 7.19 -51.93 -0.37 0.55 16 44 H 0.06 0.69 6.56 -51.93 -0.34 0.35 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -29.94 342.81 -11.32 -41.26 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -8.20 Total: -1.99 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -0.97 Total: -22.78 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.02 Total: -32.51 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.94 -11.32 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.537 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds