Wall clock time and date at job start Tue Mar 31 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99800 * 2 1 4 4 H 1.48497 * 109.47100 * 239.99716 * 3 2 1 5 5 H 1.48500 * 109.47014 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46929 * 120.00035 * 3 2 1 7 7 C 1.38801 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99914 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99706 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99892 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47385 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.46998 * 179.97438 * 12 11 10 14 14 C 1.46853 * 111.00185 * 45.84528 * 13 12 11 15 15 C 1.53031 * 109.57626 * 185.82365 * 14 13 12 16 16 C 1.53141 * 109.28399 * 300.90195 * 15 14 13 17 17 C 1.53083 * 109.11900 * 57.57708 * 16 15 14 18 18 H 1.08999 * 109.45701 * 62.09710 * 17 16 15 19 19 C 1.52920 * 109.58105 * 182.06868 * 17 16 15 20 20 C 1.52992 * 109.56693 * 60.24651 * 19 17 16 21 21 C 1.53016 * 109.42728 * 59.94534 * 20 19 17 22 22 C 1.52989 * 109.41958 * 299.85968 * 21 20 19 23 23 C 1.46899 * 111.00080 * 169.99836 * 13 12 11 24 24 H 1.08998 * 109.48764 * 54.03752 * 23 13 12 25 25 H 0.97008 * 120.00225 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47443 * 59.99869 * 10 9 7 27 27 H 1.09000 * 109.47310 * 300.00015 * 10 9 7 28 28 H 1.09000 * 109.46887 * 59.99486 * 11 10 9 29 29 H 1.09000 * 109.46789 * 300.00291 * 11 10 9 30 30 H 1.08993 * 109.47112 * 59.99983 * 12 11 10 31 31 H 1.08998 * 109.46978 * 299.99707 * 12 11 10 32 32 H 1.08996 * 109.45462 * 305.86106 * 14 13 12 33 33 H 1.09005 * 109.44917 * 65.81470 * 14 13 12 34 34 H 1.09002 * 109.49784 * 60.84111 * 15 14 13 35 35 H 1.08998 * 109.50251 * 180.92320 * 15 14 13 36 36 H 1.09001 * 109.53302 * 177.47079 * 16 15 14 37 37 H 1.09007 * 109.52918 * 297.61078 * 16 15 14 38 38 H 1.09001 * 109.45246 * 300.22599 * 19 17 16 39 39 H 1.08995 * 109.45514 * 180.27997 * 19 17 16 40 40 H 1.08998 * 109.48287 * 299.95489 * 20 19 17 41 41 H 1.09002 * 109.47810 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.48044 * 59.84783 * 21 20 19 43 43 H 1.08997 * 109.47573 * 179.86543 * 21 20 19 44 44 H 1.09001 * 109.46059 * 180.14062 * 22 21 20 45 45 H 1.08997 * 109.46245 * 300.12569 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0021 11 6 1.9794 -5.3243 0.0017 12 6 3.1515 -6.3077 0.0024 13 7 2.6364 -7.6834 0.0026 14 6 1.5578 -7.8417 -0.9813 15 6 0.9485 -9.2396 -0.8538 16 6 2.0383 -10.2896 -1.0885 17 6 3.1703 -10.0711 -0.0814 18 1 2.7873 -10.2054 0.9302 19 6 4.2883 -11.0820 -0.3397 20 6 4.8331 -10.8926 -1.7567 21 6 5.3844 -9.4728 -1.9044 22 6 4.2634 -8.4630 -1.6517 23 6 3.7167 -8.6501 -0.2349 24 1 4.5161 -8.4869 0.4879 25 1 -0.4851 0.8401 -0.0004 26 1 3.1238 -3.7309 0.8925 27 1 3.1252 -3.7317 -0.8874 28 1 1.3717 -5.4844 -0.8889 29 1 1.3698 -5.4842 0.8911 30 1 3.7595 -6.1476 0.8927 31 1 3.7606 -6.1475 -0.8872 32 1 0.7877 -7.0920 -0.7996 33 1 1.9609 -7.7119 -1.9858 34 1 0.5316 -9.3650 0.1455 35 1 0.1592 -9.3616 -1.5955 36 1 1.6187 -11.2867 -0.9544 37 1 2.4269 -10.1912 -2.1022 38 1 3.8950 -12.0931 -0.2342 39 1 5.0909 -10.9278 0.3815 40 1 4.0312 -11.0480 -2.4783 41 1 5.6301 -11.6135 -1.9390 42 1 6.1846 -9.3165 -1.1808 43 1 5.7750 -9.3378 -2.9130 44 1 4.6548 -7.4514 -1.7592 45 1 3.4624 -8.6212 -2.3738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074981032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:53 Heat of formation + Delta-G solvation = -31.140087 kcal Electronic energy + Delta-G solvation = -20706.674773 eV Core-core repulsion = 17848.524531 eV Total energy + Delta-G solvation = -2858.150242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.67363 -36.58563 -34.09302 -32.44921 -32.26440 -30.49105 -29.32222 -26.13975 -25.48917 -24.23693 -22.79838 -22.38766 -21.51611 -19.90811 -17.99269 -17.45756 -16.11680 -16.01138 -15.47923 -14.94889 -14.78895 -14.51303 -14.22841 -13.80888 -13.44290 -13.34116 -13.12003 -12.88170 -12.85837 -12.34874 -12.31563 -11.89062 -11.66689 -11.41500 -11.39093 -11.12280 -11.03890 -10.98521 -10.74674 -10.62259 -10.56313 -10.49496 -10.21066 -10.07998 -9.93470 -9.47471 -9.03289 -8.27950 -8.11136 -6.50400 -6.20754 -3.90812 3.22941 3.24440 3.28935 3.56796 3.95731 4.24732 4.41895 4.51561 4.67904 4.82813 4.96676 5.01290 5.05673 5.15023 5.16539 5.23674 5.27770 5.35465 5.37695 5.43609 5.50734 5.53592 5.59587 5.62521 5.70355 5.74578 5.83057 5.84092 5.86436 5.93516 5.95022 5.98284 6.05121 6.10362 6.18329 6.19529 6.27785 6.36801 6.41999 6.63247 6.77512 7.20111 7.22466 7.62081 8.38351 9.25336 10.87388 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.036487 B = 0.003030 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.220452 B = 9239.138843 C = 9715.980431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.071 0.929 9 S -0.133 6.133 10 C -0.112 4.112 11 C -0.100 4.100 12 C 0.057 3.943 13 N -0.530 5.530 14 C 0.042 3.958 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.077 4.077 18 H 0.076 0.924 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.158 4.158 23 C 0.092 3.908 24 H 0.078 0.922 25 H 0.268 0.732 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.035 0.965 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.714 -22.653 -2.832 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.665 4.665 8 H 0.089 0.911 9 S 0.095 5.905 10 C -0.261 4.261 11 C -0.139 4.139 12 C -0.072 4.072 13 N -0.253 5.253 14 C -0.085 4.085 15 C -0.155 4.155 16 C -0.155 4.155 17 C -0.096 4.096 18 H 0.095 0.905 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.152 4.152 22 C -0.197 4.197 23 C -0.017 4.017 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.209 -22.800 -2.353 23.747 hybrid contribution 2.279 1.550 -0.821 2.876 sum 8.487 -21.250 -3.174 23.101 Atomic orbital electron populations 1.70015 1.05912 1.27399 1.47251 1.25011 0.95074 0.99054 0.94636 0.86232 0.79247 0.81263 0.78841 1.19963 1.20814 1.19929 1.22653 0.94478 0.90846 1.58496 0.91052 1.84603 1.09630 0.99386 1.96847 1.23230 1.02795 0.97394 1.02692 1.21436 0.97150 0.92252 1.03021 1.22222 0.97350 0.86900 1.00723 1.62236 1.09904 1.03911 1.49257 1.22266 0.94805 0.97744 0.93716 1.21589 0.97440 0.94159 1.02267 1.21716 0.95810 0.98642 0.99348 1.21090 0.95066 0.93482 0.99933 0.90538 1.21530 0.98000 0.98718 0.96878 1.21582 1.00269 0.96652 0.97374 1.21448 0.97793 0.94649 1.01271 1.22269 0.98859 0.99434 0.99101 1.21648 0.92929 0.92010 0.95079 0.90372 0.92272 0.92128 0.92427 0.91438 0.90803 0.90902 0.94627 0.89593 0.94666 0.91222 0.91787 0.92263 0.91784 0.91963 0.91983 0.91801 0.92332 0.92105 0.92312 0.91780 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -15.02 9.50 30.94 0.29 -14.72 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.13 -3.53 21.44 -107.50 -2.30 -5.83 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 C -0.10 -1.67 4.47 -26.73 -0.12 -1.79 16 12 C 0.06 0.80 5.15 -3.83 -0.02 0.78 16 13 N -0.53 -6.66 4.76 -226.66 -1.08 -7.73 16 14 C 0.04 0.51 4.55 -3.83 -0.02 0.49 16 15 C -0.12 -1.18 6.09 -26.64 -0.16 -1.34 16 16 C -0.12 -1.06 4.70 -26.62 -0.13 -1.18 16 17 C -0.08 -0.71 2.60 -90.61 -0.24 -0.95 16 18 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 19 C -0.11 -0.88 5.45 -26.78 -0.15 -1.02 16 20 C -0.12 -0.92 5.65 -26.73 -0.15 -1.07 16 21 C -0.11 -0.96 5.92 -26.73 -0.16 -1.12 16 22 C -0.16 -1.59 4.27 -26.73 -0.11 -1.71 16 23 C 0.09 0.98 2.22 -67.70 -0.15 0.83 16 24 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 25 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 27 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 28 H 0.07 1.13 6.21 -51.93 -0.32 0.81 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.49 6.08 -51.93 -0.32 0.18 16 32 H 0.09 1.14 5.81 -51.93 -0.30 0.84 16 33 H 0.04 0.43 6.17 -51.93 -0.32 0.11 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.58 4.86 -51.92 -0.25 0.33 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.49 6.41 -51.93 -0.33 0.16 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.72 6.37 -51.93 -0.33 0.39 16 45 H 0.07 0.74 4.78 -51.93 -0.25 0.49 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -30.21 338.79 -11.44 -41.66 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.89 Total: -1.43 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -0.99 Total: -22.95 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: -0.34 Total: -33.26 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.83 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.21 -11.44 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.518 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds