Wall clock time and date at job start Tue Mar 31 2020 06:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99845 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99547 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99963 * 3 2 1 7 7 C 1.38798 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99832 * 359.72198 * 7 2 1 10 10 C 1.81004 * 99.99907 * 180.27629 * 9 7 2 11 11 C 1.53004 * 109.47046 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47151 * 179.97438 * 12 11 10 14 14 C 1.46874 * 111.00068 * 45.87121 * 13 12 11 15 15 C 1.53026 * 109.59475 * 185.71124 * 14 13 12 16 16 C 1.53152 * 109.32212 * 300.94255 * 15 14 13 17 17 C 1.53075 * 109.08489 * 57.59975 * 16 15 14 18 18 H 1.09001 * 109.56918 * 62.16123 * 17 16 15 19 19 C 1.52968 * 109.60704 * 182.33217 * 17 16 15 20 20 C 1.53024 * 109.39467 * 179.97438 * 19 17 16 21 21 C 1.52993 * 109.52457 * 300.05557 * 20 19 17 22 22 C 1.53020 * 109.45787 * 59.90394 * 21 20 19 23 23 C 1.46811 * 110.99855 * 169.99855 * 13 12 11 24 24 H 1.08994 * 109.44466 * 294.07247 * 23 13 12 25 25 H 0.96995 * 120.00136 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47255 * 300.00302 * 10 9 7 27 27 H 1.09001 * 109.46783 * 60.00610 * 10 9 7 28 28 H 1.09000 * 109.47045 * 300.00069 * 11 10 9 29 29 H 1.08998 * 109.47382 * 59.99733 * 11 10 9 30 30 H 1.09000 * 109.46959 * 299.99812 * 12 11 10 31 31 H 1.08998 * 109.47459 * 59.99470 * 12 11 10 32 32 H 1.08998 * 109.44757 * 305.74715 * 14 13 12 33 33 H 1.09001 * 109.45095 * 65.66894 * 14 13 12 34 34 H 1.08994 * 109.49630 * 180.99307 * 15 14 13 35 35 H 1.08993 * 109.52329 * 60.91274 * 15 14 13 36 36 H 1.08996 * 109.53330 * 297.71845 * 16 15 14 37 37 H 1.08992 * 109.59893 * 177.51911 * 16 15 14 38 38 H 1.08996 * 109.48603 * 299.93829 * 19 17 16 39 39 H 1.09001 * 109.48249 * 59.98335 * 19 17 16 40 40 H 1.09000 * 109.46097 * 60.07240 * 20 19 17 41 41 H 1.09005 * 109.46472 * 180.02562 * 20 19 17 42 42 H 1.09007 * 109.45757 * 179.87447 * 21 20 19 43 43 H 1.08998 * 109.45574 * 299.83189 * 21 20 19 44 44 H 1.09005 * 109.40141 * 179.97438 * 22 21 20 45 45 H 1.08993 * 109.56333 * 59.95028 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0086 10 6 2.5161 -3.8913 0.0147 11 6 1.9796 -5.3242 0.0217 12 6 3.1516 -6.3076 0.0275 13 7 2.6365 -7.6833 0.0348 14 6 1.5582 -7.8468 -0.9490 15 6 0.9505 -9.2450 -0.8166 16 6 2.0412 -10.2954 -1.0460 17 6 3.1713 -10.0718 -0.0379 18 1 2.7888 -10.2031 0.9743 19 6 4.2941 -11.0786 -0.2940 20 6 5.4211 -10.8505 0.7157 21 6 5.9645 -9.4285 0.5627 22 6 4.8394 -8.4228 0.8161 23 6 3.7162 -8.6505 -0.1976 24 1 4.1066 -8.5230 -1.2072 25 1 -0.4850 0.8400 -0.0004 26 1 3.1247 -3.7359 -0.8761 27 1 3.1246 -3.7266 0.9039 28 1 1.3707 -5.4799 0.9123 29 1 1.3711 -5.4887 -0.8676 30 1 3.7608 -6.1520 -0.8629 31 1 3.7597 -6.1430 0.9170 32 1 0.7872 -7.0975 -0.7702 33 1 1.9613 -7.7198 -1.9538 34 1 0.1625 -9.3708 -1.5590 35 1 0.5321 -9.3672 0.1824 36 1 2.4321 -10.1997 -2.0589 37 1 1.6229 -11.2925 -0.9093 38 1 3.9066 -12.0914 -0.1833 39 1 4.6788 -10.9448 -1.3050 40 1 5.0361 -10.9854 1.7264 41 1 6.2222 -11.5671 0.5339 42 1 6.7658 -9.2664 1.2838 43 1 6.3525 -9.2948 -0.4471 44 1 5.2277 -7.4101 0.7074 45 1 4.4508 -8.5567 1.8256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074981033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:56 Heat of formation + Delta-G solvation = -38.337104 kcal Electronic energy + Delta-G solvation = -20522.725866 eV Core-core repulsion = 17664.263538 eV Total energy + Delta-G solvation = -2858.462328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.22735 -36.64465 -34.64426 -32.44993 -32.24683 -30.26786 -29.49855 -26.15291 -25.44759 -24.03140 -23.07547 -21.93031 -20.40304 -19.96540 -19.69507 -17.45625 -15.99467 -15.49448 -15.25668 -14.96763 -14.79113 -14.46511 -14.34992 -14.11298 -13.65487 -13.30436 -13.28568 -12.84821 -12.64186 -12.24315 -12.09349 -11.77533 -11.63629 -11.42250 -11.27444 -11.16965 -11.07662 -11.01843 -10.80043 -10.73864 -10.68172 -10.59509 -10.28049 -10.02424 -9.85107 -9.47012 -9.04971 -8.27388 -8.20386 -6.50533 -6.21279 -3.91114 3.21905 3.23355 3.30972 3.56375 3.89785 4.24189 4.44375 4.50792 4.64743 4.84924 4.99012 5.05569 5.10162 5.11549 5.14761 5.26046 5.27913 5.33754 5.38381 5.40359 5.50049 5.56133 5.62489 5.65346 5.71777 5.74744 5.82995 5.87647 5.88945 5.91306 5.95588 6.00456 6.03664 6.06188 6.16749 6.18833 6.25177 6.35271 6.40112 6.62673 6.77322 7.19288 7.23325 7.62510 8.38650 9.25167 10.87002 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.031741 B = 0.003063 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.924196 B = 9140.103308 C = 9871.443100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.515 4.515 8 H 0.072 0.928 9 S -0.134 6.134 10 C -0.112 4.112 11 C -0.101 4.101 12 C 0.060 3.940 13 N -0.533 5.533 14 C 0.047 3.953 15 C -0.117 4.117 16 C -0.116 4.116 17 C -0.078 4.078 18 H 0.078 0.922 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.116 4.116 23 C 0.093 3.907 24 H 0.036 0.964 25 H 0.266 0.734 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.030 0.970 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.029 0.971 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.182 -22.614 -0.728 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.139 4.139 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.663 4.663 8 H 0.091 0.909 9 S 0.094 5.906 10 C -0.261 4.261 11 C -0.139 4.139 12 C -0.069 4.069 13 N -0.257 5.257 14 C -0.081 4.081 15 C -0.155 4.155 16 C -0.154 4.154 17 C -0.097 4.097 18 H 0.096 0.904 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.015 4.015 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.696 -22.769 -0.268 23.735 hybrid contribution 2.228 1.533 -0.857 2.837 sum 8.924 -21.236 -1.125 23.062 Atomic orbital electron populations 1.70035 1.05908 1.27175 1.47440 1.25019 0.95083 0.99087 0.94665 0.86116 0.79658 0.81896 0.77869 1.19617 1.20594 1.20565 1.22734 0.94538 0.90795 1.58223 0.90948 1.84613 1.09659 0.99456 1.96832 1.23229 1.02789 0.97372 1.02704 1.21446 0.97166 0.92273 1.03038 1.22200 0.97255 0.86867 1.00550 1.61997 1.10199 1.03717 1.49825 1.22231 0.94895 0.97792 0.93132 1.21589 0.97443 0.94056 1.02363 1.21641 0.96054 0.98852 0.98840 1.21184 0.94781 0.93516 1.00208 0.90360 1.21580 0.95610 0.98683 0.99261 1.21540 0.97840 0.96663 0.99637 1.21527 0.97710 0.94748 1.01615 1.21653 0.94781 0.99090 0.99860 1.21598 0.90872 0.91937 0.97123 0.94603 0.92389 0.92414 0.92117 0.90759 0.91440 0.95217 0.90567 0.89393 0.95229 0.91671 0.91103 0.92490 0.92020 0.91933 0.92226 0.91884 0.92259 0.91900 0.92242 0.91701 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.95 9.50 30.94 0.29 -14.66 16 8 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.13 -3.55 21.44 -107.50 -2.30 -5.86 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 C -0.10 -1.69 4.47 -26.73 -0.12 -1.81 16 12 C 0.06 0.85 4.37 -3.83 -0.02 0.83 16 13 N -0.53 -6.80 4.65 -226.70 -1.05 -7.86 16 14 C 0.05 0.58 4.85 -3.82 -0.02 0.56 16 15 C -0.12 -1.19 6.09 -26.64 -0.16 -1.35 16 16 C -0.12 -1.06 5.30 -26.61 -0.14 -1.21 16 17 C -0.08 -0.74 2.14 -90.57 -0.19 -0.93 16 18 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 19 C -0.11 -0.90 5.22 -26.74 -0.14 -1.04 16 20 C -0.12 -0.91 5.92 -26.72 -0.16 -1.07 16 21 C -0.12 -1.00 5.92 -26.72 -0.16 -1.15 16 22 C -0.12 -1.19 4.81 -26.72 -0.13 -1.31 16 23 C 0.09 1.03 1.66 -67.73 -0.11 0.91 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.07 1.13 6.21 -51.93 -0.32 0.81 16 30 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.08 1.06 6.86 -51.93 -0.36 0.71 16 32 H 0.09 1.17 5.82 -51.93 -0.30 0.86 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -30.33 349.63 -11.79 -42.12 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -8.47 Total: -2.49 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -0.94 Total: -22.40 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: -0.32 Total: -33.36 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.30 Total: -5.86 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.33 -11.79 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.784 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds