Wall clock time and date at job start Tue Mar 31 2020 06:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 120.00100 * 2 1 4 4 H 1.48509 * 109.46869 * 239.99695 * 3 2 1 5 5 H 1.48495 * 109.46935 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47285 * 119.99918 * 3 2 1 7 7 C 1.38801 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00395 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99789 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99959 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47145 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46980 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47122 * 184.06358 * 12 11 10 14 14 C 1.46905 * 110.99966 * 287.18797 * 13 12 11 15 15 C 1.52993 * 117.49753 * 139.59570 * 14 13 12 16 16 C 1.52990 * 117.50028 * 70.93396 * 14 13 12 17 17 C 1.46894 * 111.00077 * 163.23214 * 13 12 11 18 18 C 1.52993 * 109.47432 * 58.95434 * 17 13 12 19 19 C 1.53002 * 109.47293 * 179.97438 * 18 17 13 20 20 C 1.53000 * 109.46828 * 60.00271 * 19 18 17 21 21 C 1.52999 * 109.47077 * 299.99438 * 20 19 18 22 22 C 1.53002 * 109.46832 * 60.00564 * 21 20 19 23 23 H 0.97005 * 119.99966 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46969 * 59.99988 * 10 9 7 25 25 H 1.08997 * 109.47391 * 299.99913 * 10 9 7 26 26 H 1.08997 * 109.46659 * 60.00400 * 11 10 9 27 27 H 1.08997 * 109.47286 * 300.00443 * 11 10 9 28 28 H 1.09006 * 109.46850 * 64.06965 * 12 11 10 29 29 H 1.08995 * 109.47428 * 304.06625 * 12 11 10 30 30 H 1.08995 * 115.54501 * 285.26213 * 14 13 12 31 31 H 1.09000 * 117.50193 * 359.97438 * 15 14 13 32 32 H 1.09005 * 117.50042 * 145.01875 * 15 14 13 33 33 H 1.09010 * 117.49979 * 214.97856 * 16 14 13 34 34 H 1.08999 * 117.50104 * 359.97438 * 16 14 13 35 35 H 1.09003 * 109.47051 * 178.95538 * 17 13 12 36 36 H 1.09003 * 109.47087 * 300.00082 * 18 17 13 37 37 H 1.09003 * 109.47269 * 60.00116 * 18 17 13 38 38 H 1.09003 * 109.47142 * 300.00074 * 19 18 17 39 39 H 1.09000 * 109.46958 * 179.97438 * 19 18 17 40 40 H 1.09003 * 109.46812 * 180.02562 * 20 19 18 41 41 H 1.08998 * 109.47630 * 60.00423 * 20 19 18 42 42 H 1.09003 * 109.47432 * 300.00528 * 21 20 19 43 43 H 1.09000 * 109.46915 * 180.02562 * 21 20 19 44 44 H 1.09005 * 109.47350 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.47142 * 59.99785 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1042 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9792 -5.3243 0.0012 12 6 3.1513 -6.3077 0.0005 13 7 2.6383 -7.6808 -0.0970 14 6 2.0164 -8.1014 1.1657 15 6 0.7238 -8.9154 1.0798 16 6 0.6812 -7.4576 1.5444 17 6 3.7012 -8.6128 -0.4964 18 6 4.8358 -8.5620 0.5288 19 6 5.9426 -9.5332 0.1131 20 6 6.4803 -9.1349 -1.2628 21 6 5.3457 -9.1857 -2.2880 22 6 4.2389 -8.2146 -1.8724 23 1 -0.4850 0.8401 -0.0004 24 1 3.1244 -3.7313 0.8906 25 1 3.1244 -3.7314 -0.8894 26 1 1.3704 -5.4846 -0.8886 27 1 1.3708 -5.4840 0.8913 28 1 3.7191 -6.1968 0.9244 29 1 3.7990 -6.1005 -0.8512 30 1 2.7079 -8.3388 1.9741 31 1 0.3346 -9.1386 0.0864 32 1 0.5647 -9.6882 1.8319 33 1 0.4940 -7.2718 2.6021 34 1 0.2644 -6.7216 0.8569 35 1 3.2986 -9.6247 -0.5430 36 1 5.2384 -7.5501 0.5754 37 1 4.4528 -8.8462 1.5089 38 1 5.5397 -10.5450 0.0668 39 1 6.7511 -9.4967 0.8432 40 1 7.2685 -9.8270 -1.5591 41 1 6.8832 -8.1232 -1.2166 42 1 4.9428 -10.1975 -2.3343 43 1 5.7289 -8.9024 -3.2683 44 1 3.4307 -8.2504 -2.6030 45 1 4.6418 -7.2028 -1.8261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074981748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:11 Heat of formation + Delta-G solvation = 1.215035 kcal Electronic energy + Delta-G solvation = -20523.270510 eV Core-core repulsion = 17666.523292 eV Total energy + Delta-G solvation = -2856.747218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.86854 -37.28356 -34.42333 -32.58374 -32.36253 -30.94517 -28.59775 -25.85733 -25.12126 -23.12664 -22.41023 -22.04117 -21.26098 -20.33416 -19.09828 -17.42782 -16.41313 -15.70753 -15.33336 -14.77829 -14.65625 -14.49399 -14.42868 -14.09744 -13.82539 -13.31913 -12.89349 -12.86255 -12.41303 -12.35776 -12.08801 -11.81811 -11.51449 -11.28075 -11.19407 -11.12012 -11.03212 -10.81349 -10.76457 -10.64053 -10.60279 -10.37843 -10.22463 -9.97344 -9.73848 -9.46342 -9.01636 -8.25737 -8.20671 -6.47725 -6.19155 -3.88724 3.23980 3.25227 3.29763 3.56257 3.82972 3.86608 4.26567 4.51272 4.58633 4.74368 4.95592 4.99449 5.04217 5.07504 5.16577 5.20765 5.23378 5.28868 5.34411 5.39675 5.45921 5.47931 5.59924 5.64769 5.70224 5.74847 5.84652 5.86059 5.88460 5.93010 5.98207 5.99713 6.06337 6.10237 6.20560 6.24525 6.29134 6.31572 6.47318 6.69808 6.84509 7.17703 7.24285 7.63585 8.39935 9.26953 10.88976 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.003547 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.981941 B = 7892.388086 C = 8816.651310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.071 0.929 9 S -0.132 6.132 10 C -0.112 4.112 11 C -0.101 4.101 12 C 0.059 3.941 13 N -0.505 5.505 14 C 0.002 3.998 15 C -0.168 4.168 16 C -0.171 4.171 17 C 0.093 3.907 18 C -0.154 4.154 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.115 4.115 23 H 0.267 0.733 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 -20.741 -0.044 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.137 4.137 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.665 4.665 8 H 0.089 0.911 9 S 0.096 5.904 10 C -0.261 4.261 11 C -0.140 4.140 12 C -0.070 4.070 13 N -0.227 5.227 14 C -0.107 4.107 15 C -0.205 4.205 16 C -0.208 4.208 17 C -0.016 4.016 18 C -0.193 4.193 19 C -0.152 4.152 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.153 4.153 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.273 -20.807 -0.413 22.045 hybrid contribution 2.588 1.354 0.709 3.005 sum 9.861 -19.453 0.296 21.812 Atomic orbital electron populations 1.70017 1.05900 1.27356 1.47308 1.25002 0.95061 0.99014 0.94669 0.86245 0.79255 0.81325 0.78822 1.19955 1.20828 1.19977 1.22661 0.94474 0.90929 1.58413 0.91108 1.84591 1.09673 0.99276 1.96826 1.23243 1.02727 0.97688 1.02455 1.21541 0.97365 0.91626 1.03432 1.22222 0.97242 0.87143 1.00390 1.62000 1.30066 1.02048 1.28616 1.22342 0.90152 1.05586 0.92578 1.23004 1.00426 0.94409 1.02696 1.23287 0.99138 0.96264 1.02121 1.21645 0.89330 0.96530 0.94083 1.22250 0.97086 1.00315 0.99601 1.21455 0.97869 0.99061 0.96790 1.21557 0.97720 1.01549 0.95034 1.21509 0.95815 0.99703 0.98450 1.21657 0.98022 0.99413 0.96213 0.92301 0.92541 0.92416 0.91118 0.90550 0.94858 0.90647 0.89891 0.88394 0.89331 0.88850 0.86820 0.90260 0.91612 0.92068 0.92123 0.92332 0.92243 0.92009 0.92072 0.91876 0.91046 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -15.05 9.50 30.94 0.29 -14.75 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.13 -3.51 21.44 -107.50 -2.30 -5.81 16 10 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 11 C -0.10 -1.71 4.41 -26.73 -0.12 -1.83 16 12 C 0.06 0.82 3.86 -3.82 -0.01 0.81 16 13 N -0.50 -6.28 4.59 -218.73 -1.00 -7.28 16 14 C 0.00 0.03 4.62 -67.72 -0.31 -0.29 16 15 C -0.17 -1.80 10.46 -26.70 -0.28 -2.08 16 16 C -0.17 -2.10 8.63 -26.70 -0.23 -2.33 16 17 C 0.09 0.97 2.23 -67.72 -0.15 0.82 16 18 C -0.15 -1.51 4.61 -26.73 -0.12 -1.63 16 19 C -0.11 -0.94 5.92 -26.73 -0.16 -1.10 16 20 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 21 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 22 C -0.12 -1.17 5.06 -26.73 -0.14 -1.31 16 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.06 1.17 8.14 -51.91 -0.42 0.74 16 25 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.08 1.30 4.97 -51.93 -0.26 1.04 16 28 H 0.03 0.47 7.18 -51.93 -0.37 0.10 16 29 H 0.08 1.04 5.66 -51.93 -0.29 0.75 16 30 H 0.08 0.95 6.49 -51.93 -0.34 0.61 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.07 8.14 -51.92 -0.42 0.64 16 34 H 0.11 1.60 6.00 -51.93 -0.31 1.29 16 35 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 36 H 0.07 0.72 6.78 -51.93 -0.35 0.37 16 37 H 0.06 0.61 6.46 -51.93 -0.34 0.27 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.74 6.11 -51.93 -0.32 0.43 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -30.27 352.18 -11.76 -42.03 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.04 Total: 0.68 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -1.43 Total: -26.11 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: -0.27 Total: -32.84 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.30 Total: -5.81 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.27 -11.76 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.242 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds