Wall clock time and date at job start Tue Mar 31 2020 06:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47222 * 2 1 4 4 C 1.42889 * 114.00127 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47420 * 330.00039 * 4 3 2 6 6 C 1.52999 * 109.47533 * 89.99923 * 4 3 2 7 7 C 1.50706 * 109.47198 * 210.00236 * 4 3 2 8 8 N 1.29944 * 126.28499 * 315.02443 * 7 4 3 9 9 O 1.21295 * 110.25258 * 180.02562 * 8 7 4 10 10 C 1.33643 * 109.81151 * 0.02562 * 9 8 7 11 11 C 1.50701 * 126.55202 * 179.97438 * 10 9 8 12 12 N 1.46906 * 109.46965 * 270.02073 * 11 10 9 13 13 C 1.46902 * 110.99573 * 293.95399 * 12 11 10 14 14 C 1.46898 * 110.99888 * 170.00033 * 12 11 10 15 15 C 1.53006 * 109.46682 * 189.99906 * 14 12 11 16 16 C 1.50699 * 109.46643 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00234 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99736 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99780 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00027 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47491 * 89.99464 * 20 18 16 22 22 H 1.48497 * 109.47126 * 210.00111 * 20 18 16 23 23 H 1.48504 * 109.46805 * 329.99366 * 20 18 16 24 24 N 1.31124 * 106.89509 * 0.22468 * 10 9 8 25 25 H 1.09000 * 109.47396 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47074 * 299.99937 * 1 2 3 27 27 H 1.09001 * 109.47665 * 59.99815 * 1 2 3 28 28 H 1.09002 * 109.46846 * 240.00539 * 2 1 3 29 29 H 1.09001 * 109.47665 * 120.00185 * 2 1 3 30 30 H 1.09003 * 109.47057 * 179.97438 * 6 4 3 31 31 H 1.08999 * 109.47166 * 300.00409 * 6 4 3 32 32 H 1.09005 * 109.47041 * 60.00047 * 6 4 3 33 33 H 1.08993 * 109.47133 * 150.02111 * 11 10 9 34 34 H 1.08996 * 109.47320 * 30.01851 * 11 10 9 35 35 H 1.09004 * 109.47457 * 60.00221 * 13 12 11 36 36 H 1.09001 * 109.46615 * 179.97438 * 13 12 11 37 37 H 1.08990 * 109.47358 * 299.99539 * 13 12 11 38 38 H 1.08999 * 109.46988 * 309.99510 * 14 12 11 39 39 H 1.08996 * 109.46945 * 69.99996 * 14 12 11 40 40 H 1.08999 * 109.47085 * 299.99544 * 15 14 12 41 41 H 1.08996 * 109.47357 * 60.00343 * 15 14 12 42 42 H 0.97002 * 120.00050 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8635 0.6015 0.5129 6 6 3.9387 1.5006 -1.4432 7 6 3.8347 2.7263 0.7099 8 7 3.2981 3.8996 0.5552 9 8 3.8484 4.7106 1.2699 10 6 4.8183 4.1136 1.9692 11 6 5.7373 4.7679 2.9684 12 7 6.9380 5.2603 2.2800 13 6 7.7349 4.1460 1.7496 14 6 7.7441 6.1078 3.1689 15 6 8.8415 6.7991 2.3573 16 6 9.6688 7.6680 3.2692 17 1 9.4355 7.7214 4.3224 18 6 10.7243 8.3939 2.7592 19 7 11.4460 9.1525 3.5549 20 14 11.1283 8.3009 0.9378 21 1 10.3756 9.3535 0.2095 22 1 12.5855 8.5096 0.7428 23 1 10.7449 6.9655 0.4134 24 7 4.8209 2.8509 1.6158 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 5.0253 1.5871 -1.4436 31 1 3.6465 0.5848 -1.9571 32 1 3.5060 2.3592 -1.9568 33 1 6.0260 4.0406 3.7271 34 1 5.2224 5.6032 3.4430 35 1 7.1349 3.5753 1.0407 36 1 8.6175 4.5387 1.2447 37 1 8.0433 3.4974 2.5694 38 1 7.1053 6.8603 3.6311 39 1 8.1991 5.4915 3.9442 40 1 9.4803 6.0465 1.8950 41 1 8.3865 7.4154 1.5819 42 1 12.1883 9.6635 3.1961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075886850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:44 Heat of formation + Delta-G solvation = 24.848413 kcal Electronic energy + Delta-G solvation = -22051.274380 eV Core-core repulsion = 18649.258768 eV Total energy + Delta-G solvation = -3402.015613 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.61950 -38.90595 -37.70982 -35.87485 -33.71709 -32.87405 -31.85983 -30.43155 -30.17703 -27.86025 -26.00127 -25.28818 -23.62299 -23.19005 -22.52023 -20.82478 -20.01412 -18.17236 -17.57604 -17.15041 -16.90003 -16.07967 -15.69060 -15.33995 -15.11195 -14.87623 -14.04753 -13.91338 -13.63348 -13.35908 -13.10349 -12.88975 -12.61659 -12.56490 -12.42382 -12.19379 -11.97313 -11.86583 -11.56271 -11.41061 -11.39191 -11.32974 -11.06814 -10.96824 -10.23531 -10.21380 -10.06345 -9.79723 -9.76670 -9.24558 -8.55455 -8.15557 -6.07010 -4.05693 1.10944 2.03835 2.79123 2.89375 3.31749 3.38949 3.42803 3.69991 3.98733 4.27831 4.44076 4.47712 4.58032 4.72267 4.81678 4.93144 4.95928 5.11480 5.16815 5.25657 5.27565 5.35763 5.44503 5.49255 5.55867 5.61686 5.72208 5.74492 5.77877 5.89992 6.03987 6.17632 6.25121 6.64521 6.71323 6.96996 7.09885 7.39593 7.46888 7.78013 8.13729 8.48533 8.96498 9.55158 11.06090 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.038972 B = 0.002824 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.293355 B = 9913.154935 C =10229.049882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.185 3.815 5 H 0.092 0.908 6 C -0.169 4.169 7 C 0.161 3.839 8 N -0.361 5.361 9 O 0.090 5.910 10 C 0.206 3.794 11 C 0.140 3.860 12 N -0.542 5.542 13 C 0.021 3.979 14 C 0.072 3.928 15 C -0.008 4.008 16 C -0.522 4.522 17 H 0.072 0.928 18 C 0.068 3.932 19 N -0.902 5.902 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.266 1.266 24 N -0.479 5.479 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.018 0.982 41 H 0.022 0.978 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.102 -18.888 -6.390 26.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.293 6.293 4 C 0.125 3.875 5 H 0.110 0.890 6 C -0.227 4.227 7 C -0.112 4.112 8 N -0.066 5.066 9 O 0.029 5.971 10 C -0.015 4.015 11 C 0.010 3.990 12 N -0.268 5.268 13 C -0.127 4.127 14 C -0.054 4.054 15 C -0.046 4.046 16 C -0.561 4.561 17 H 0.090 0.910 18 C -0.133 4.133 19 N -0.541 5.541 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.190 1.190 24 N -0.214 5.214 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.036 0.964 41 H 0.040 0.960 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.776 -18.609 -7.337 27.434 hybrid contribution 0.850 -0.544 -0.181 1.025 sum -17.926 -19.152 -7.518 27.288 Atomic orbital electron populations 1.21740 0.93342 1.02354 1.03381 1.22595 0.95925 0.83128 1.00394 1.88001 1.19152 1.27072 1.95028 1.19905 0.82378 0.90426 0.94783 0.89039 1.22256 1.02151 1.03623 0.94672 1.25390 0.93051 0.95462 0.97345 1.74653 1.18573 1.00830 1.12573 1.85349 1.36900 1.35391 1.39454 1.28796 0.90674 0.86939 0.95050 1.20607 0.89576 0.99471 0.89343 1.62107 1.06781 1.20140 1.37748 1.22485 0.98405 0.92329 0.99518 1.22223 0.95029 0.94458 0.93648 1.19594 0.92961 0.95689 0.96316 1.21037 1.13006 1.25738 0.96310 0.90978 1.24988 0.95812 0.94735 0.97800 1.69906 1.19763 1.29046 1.35368 0.86757 0.77300 0.79154 0.85941 1.20192 1.21495 1.19022 1.71844 1.19536 1.16395 1.13659 0.90866 0.91785 0.91668 0.92910 0.93016 0.90787 0.90966 0.91054 0.90051 0.86849 0.92256 0.90177 0.95142 0.90757 0.94666 0.96430 0.95956 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.42 6.47 37.16 0.24 0.66 16 3 O -0.37 -4.23 9.97 -35.23 -0.35 -4.58 16 4 C 0.18 2.01 3.27 -27.88 -0.09 1.92 16 5 H 0.09 0.84 7.79 -51.93 -0.40 0.44 16 6 C -0.17 -1.56 9.51 37.16 0.35 -1.21 16 7 C 0.16 2.25 7.10 -156.37 -1.11 1.14 16 8 N -0.36 -5.58 12.16 30.90 0.38 -5.21 16 9 O 0.09 1.35 11.31 18.10 0.20 1.56 16 10 C 0.21 2.88 7.13 -13.06 -0.09 2.78 16 11 C 0.14 1.78 5.59 -4.97 -0.03 1.75 16 12 N -0.54 -8.68 4.75 -244.37 -1.16 -9.84 16 13 C 0.02 0.32 9.17 60.07 0.55 0.87 16 14 C 0.07 1.33 4.90 -3.82 -0.02 1.31 16 15 C -0.01 -0.18 3.97 -27.88 -0.11 -0.29 16 16 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 17 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 20 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 24 N -0.48 -6.82 10.84 -9.87 -0.11 -6.93 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 29 H 0.05 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.93 8.12 -51.93 -0.42 0.50 16 34 H 0.11 1.21 7.93 -51.93 -0.41 0.80 16 35 H 0.06 0.88 6.74 -51.93 -0.35 0.53 16 36 H 0.08 1.34 6.30 -51.93 -0.33 1.01 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 1.32 7.93 -51.93 -0.41 0.90 16 39 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 40 H 0.02 0.41 5.53 -51.93 -0.29 0.12 16 41 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -31.99 348.73 -6.82 -38.81 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -6.79 Total: -4.81 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -0.36 Total: -4.55 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.12 Total: -48.60 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: -0.15 Total: -3.03 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.99 -6.82 -38.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075886850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.660 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds