Wall clock time and date at job start Tue Mar 31 2020 06:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99822 * 2 1 4 4 H 1.48502 * 109.47046 * 270.00596 * 3 2 1 5 5 H 1.48508 * 109.47154 * 30.00271 * 3 2 1 6 6 H 1.48496 * 109.47328 * 150.00109 * 3 2 1 7 7 C 1.37868 * 120.00525 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99704 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00705 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47863 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47631 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47118 * 182.39491 * 11 10 9 13 13 C 1.46469 * 110.99932 * 300.15357 * 12 11 10 14 14 C 1.53258 * 109.89477 * 197.79048 * 13 12 11 15 15 S 1.81922 * 108.47581 * 297.95521 * 14 13 12 16 16 C 1.81796 * 101.90321 * 51.21021 * 15 14 13 17 17 C 1.52851 * 109.45815 * 68.59505 * 16 15 14 18 18 C 1.53020 * 109.50736 * 179.88038 * 17 16 15 19 19 C 1.53002 * 109.44767 * 300.19367 * 18 17 16 20 20 C 1.53001 * 109.48544 * 60.10015 * 19 18 17 21 21 C 1.52835 * 109.49207 * 188.97198 * 16 15 14 22 22 C 1.46494 * 111.00184 * 66.14781 * 12 11 10 23 23 H 0.97001 * 119.99960 * 359.97438 * 1 2 3 24 24 H 1.09010 * 109.46968 * 59.99678 * 9 7 2 25 25 H 1.09000 * 109.46989 * 300.00455 * 9 7 2 26 26 H 1.09000 * 109.47185 * 300.00330 * 10 9 7 27 27 H 1.09001 * 109.46846 * 59.99652 * 10 9 7 28 28 H 1.09002 * 109.46655 * 302.39397 * 11 10 9 29 29 H 1.08998 * 109.47043 * 62.38636 * 11 10 9 30 30 H 1.08995 * 109.39717 * 317.92558 * 13 12 11 31 31 H 1.09003 * 109.39578 * 77.66335 * 13 12 11 32 32 H 1.08990 * 109.63788 * 178.25622 * 14 13 12 33 33 H 1.09005 * 109.63599 * 57.64662 * 14 13 12 34 34 H 1.09000 * 109.46790 * 299.89433 * 17 16 15 35 35 H 1.08998 * 109.46408 * 59.87104 * 17 16 15 36 36 H 1.08999 * 109.48021 * 180.19517 * 18 17 16 37 37 H 1.09001 * 109.47543 * 60.18568 * 18 17 16 38 38 H 1.08999 * 109.46521 * 300.09270 * 19 18 17 39 39 H 1.09000 * 109.46824 * 180.10529 * 19 18 17 40 40 H 1.08998 * 109.47288 * 179.91239 * 20 19 18 41 41 H 1.09006 * 109.46952 * 59.91233 * 20 19 18 42 42 H 1.09006 * 109.46339 * 300.17413 * 21 16 15 43 43 H 1.08998 * 109.46072 * 60.15537 * 21 16 15 44 44 H 1.09003 * 109.40226 * 282.53484 * 22 12 11 45 45 H 1.09000 * 109.40805 * 42.28106 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 6 5.5517 -2.6363 -0.0022 12 7 6.0414 -4.0200 -0.0612 13 6 5.5687 -4.7936 1.0892 14 6 6.4193 -6.0580 1.2525 15 16 6.2202 -7.0831 -0.2371 16 6 6.5616 -5.8876 -1.5634 17 6 8.0391 -5.4973 -1.5292 18 6 8.3284 -4.4932 -2.6470 19 6 7.9955 -5.1266 -3.9994 20 6 6.5149 -5.5109 -4.0324 21 6 6.2239 -6.5154 -2.9153 22 6 5.6950 -4.6455 -1.3399 23 1 -0.4850 0.8401 0.0004 24 1 3.8753 -0.6802 0.8889 25 1 3.8746 -0.6799 -0.8911 26 1 3.6587 -3.1508 0.8875 27 1 3.6580 -3.1496 -0.8925 28 1 5.9150 -2.0850 -0.8696 29 1 5.9150 -2.1608 0.9088 30 1 5.6465 -4.1859 1.9907 31 1 4.5274 -5.0754 0.9328 32 1 6.0840 -6.6145 2.1276 33 1 7.4672 -5.7818 1.3697 34 1 8.2732 -5.0452 -0.5653 35 1 8.6531 -6.3865 -1.6718 36 1 9.3828 -4.2178 -2.6244 37 1 7.7170 -3.6024 -2.5026 38 1 8.6056 -6.0183 -4.1429 39 1 8.2032 -4.4123 -4.7961 40 1 6.2776 -5.9607 -4.9964 41 1 5.9048 -4.6193 -3.8873 42 1 6.8310 -7.4086 -3.0628 43 1 5.1683 -6.7861 -2.9364 44 1 4.6441 -4.9345 -1.3287 45 1 5.8652 -3.9348 -2.1486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079503880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:19 Heat of formation + Delta-G solvation = -25.824498 kcal Electronic energy + Delta-G solvation = -21397.061373 eV Core-core repulsion = 18539.141633 eV Total energy + Delta-G solvation = -2857.919740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.75297 -37.40093 -33.87022 -32.03493 -31.60930 -30.85478 -30.08206 -27.00805 -25.28373 -23.38687 -22.70348 -22.28966 -21.08535 -20.00958 -18.63138 -17.04954 -16.61191 -15.69513 -15.42545 -15.19797 -14.48982 -14.25044 -14.12053 -14.09193 -13.81995 -13.50799 -13.05556 -12.76831 -12.59219 -12.41375 -12.28040 -12.22207 -11.89447 -11.51607 -11.42368 -11.20531 -11.13506 -11.08649 -10.72001 -10.46997 -10.34072 -10.16645 -9.98588 -9.87769 -9.75102 -9.46143 -9.25482 -8.56587 -8.08592 -7.65448 -6.06788 -4.05148 1.76031 2.51233 3.27983 3.35639 3.38795 3.90011 4.42453 4.52228 4.58241 4.78458 4.90815 4.95017 5.04671 5.13115 5.20422 5.24692 5.27426 5.34488 5.40995 5.47130 5.54118 5.61069 5.67450 5.70818 5.71973 5.85204 5.87386 5.93562 5.97070 6.01818 6.04465 6.07607 6.15896 6.27045 6.36537 6.39147 6.51452 6.79223 7.16099 7.18668 7.23874 7.38376 7.76494 8.51394 8.97805 9.55617 11.06783 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.004336 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.192759 B = 6456.296483 C = 6984.798925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.069 0.931 9 C -0.010 4.010 10 C -0.136 4.136 11 C 0.056 3.944 12 N -0.547 5.547 13 C 0.053 3.947 14 C -0.071 4.071 15 S -0.282 6.282 16 C -0.004 4.004 17 C -0.094 4.094 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.095 4.095 22 C 0.062 3.938 23 H 0.263 0.737 24 H 0.015 0.985 25 H 0.010 0.990 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.046 -12.173 -4.002 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.087 0.913 9 C -0.048 4.048 10 C -0.175 4.175 11 C -0.071 4.071 12 N -0.270 5.270 13 C -0.076 4.076 14 C -0.220 4.220 15 S -0.051 6.051 16 C -0.114 4.114 17 C -0.133 4.133 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.134 4.134 22 C -0.068 4.068 23 H 0.073 0.927 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 18.108 -13.193 -3.975 22.754 hybrid contribution -0.358 2.102 0.140 2.137 sum 17.750 -11.091 -3.835 21.279 Atomic orbital electron populations 1.69921 1.06331 1.26885 1.51164 1.25044 0.94728 0.99195 0.94552 0.86767 0.80341 0.83602 0.78496 1.20302 1.21382 1.19021 1.21141 0.89577 0.94365 1.50797 0.91272 1.19491 0.97153 0.92001 0.96131 1.22077 0.93820 1.00478 1.01147 1.22358 0.95103 0.87220 1.02385 1.61425 1.60825 1.03254 1.01494 1.22193 0.97086 0.93640 0.94709 1.23506 1.03845 0.97751 0.96895 1.86782 1.93200 1.21909 1.03232 1.22685 0.98914 0.95178 0.94646 1.21642 0.92799 0.98941 0.99935 1.21572 1.01115 0.98802 0.94054 1.21561 0.96195 1.00508 0.97493 1.21592 0.96848 0.99354 0.97859 1.21356 1.02163 0.98347 0.91562 1.22322 0.97097 0.94920 0.92427 0.92740 0.96670 0.97153 0.92718 0.92856 0.91056 0.90926 0.89765 0.92882 0.87946 0.89390 0.90565 0.92005 0.92109 0.91300 0.92174 0.92058 0.91607 0.91307 0.91189 0.91105 0.93217 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.69 27.47 -169.99 -4.67 17.03 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -14.89 9.66 -34.45 -0.33 -15.22 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.73 16 9 C -0.01 -0.23 4.04 -27.89 -0.11 -0.34 16 10 C -0.14 -2.60 4.55 -26.73 -0.12 -2.73 16 11 C 0.06 0.86 5.23 -3.83 -0.02 0.84 16 12 N -0.55 -7.30 3.75 -235.11 -0.88 -8.18 16 13 C 0.05 0.69 4.45 -3.92 -0.02 0.67 16 14 C -0.07 -0.81 6.34 37.29 0.24 -0.57 16 15 S -0.28 -3.54 21.16 -107.50 -2.27 -5.81 16 16 C 0.00 -0.05 0.61 -90.73 -0.06 -0.10 16 17 C -0.09 -0.99 4.49 -26.80 -0.12 -1.11 16 18 C -0.12 -1.11 5.66 -26.72 -0.15 -1.27 16 19 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 20 C -0.12 -1.09 5.65 -26.72 -0.15 -1.25 16 21 C -0.10 -0.99 4.74 -26.81 -0.13 -1.12 16 22 C 0.06 0.81 2.78 -4.00 -0.01 0.80 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.02 0.35 7.20 -51.92 -0.37 -0.02 16 25 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 26 H 0.05 1.07 6.95 -51.93 -0.36 0.71 16 27 H 0.05 1.05 6.86 -51.93 -0.36 0.70 16 28 H 0.07 1.07 7.93 -51.93 -0.41 0.65 16 29 H 0.07 1.08 8.07 -51.93 -0.42 0.66 16 30 H 0.08 1.04 7.91 -51.93 -0.41 0.63 16 31 H 0.05 0.78 7.16 -51.93 -0.37 0.41 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 0.95 7.56 -51.93 -0.39 0.56 16 34 H 0.08 0.89 6.68 -51.93 -0.35 0.54 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.74 6.53 -51.93 -0.34 0.40 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.70 6.45 -51.93 -0.33 0.37 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.75 7.10 -51.93 -0.37 0.38 16 45 H 0.09 1.14 4.60 -51.93 -0.24 0.90 16 LS Contribution 336.68 15.07 5.07 5.07 Total: -1.00 -29.85 336.68 -11.31 -41.16 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -8.09 Total: -1.22 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -1.24 Total: -20.77 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.11 Total: -35.45 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.03 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.27 Total: -5.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.85 -11.31 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079503880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.335 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds