Wall clock time and date at job start Tue Mar 31 2020 05:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00214 * 2 1 4 4 C 1.52998 * 109.47070 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47395 * 65.00276 * 4 3 2 6 6 C 1.42905 * 114.00047 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46952 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.46868 * 67.93574 * 7 6 5 9 9 C 1.46902 * 110.99523 * 158.06742 * 8 7 6 10 10 C 1.50695 * 109.47209 * 287.89228 * 9 8 7 11 11 H 1.08000 * 120.00077 * 3.52538 * 10 9 8 12 12 C 1.37877 * 120.00290 * 183.51667 * 10 9 8 13 13 N 1.31509 * 120.00339 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99793 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47530 * 89.99502 * 14 12 10 16 16 H 1.48501 * 109.47005 * 209.99627 * 14 12 10 17 17 H 1.48501 * 109.47043 * 329.99449 * 14 12 10 18 18 C 1.46896 * 110.99877 * 282.02009 * 8 7 6 19 19 C 1.50701 * 109.47284 * 165.75958 * 18 8 7 20 20 C 1.34521 * 125.78771 * 89.99334 * 19 18 8 21 21 C 1.41388 * 106.83561 * 180.02562 * 20 19 18 22 22 C 1.34509 * 106.84035 * 0.02562 * 21 20 19 23 23 O 1.34301 * 108.42635 * 359.73318 * 22 21 20 24 24 H 1.09001 * 109.47224 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47083 * 300.00079 * 1 2 3 26 26 H 1.09002 * 109.47182 * 59.99802 * 1 2 3 27 27 H 1.08999 * 109.46813 * 60.00152 * 3 2 1 28 28 H 1.08999 * 109.46916 * 299.99991 * 3 2 1 29 29 H 1.09004 * 109.47406 * 304.99942 * 4 3 2 30 30 H 1.09000 * 109.47005 * 185.00311 * 4 3 2 31 31 H 1.08999 * 109.47127 * 60.00318 * 6 5 4 32 32 H 1.09001 * 109.47315 * 299.99720 * 6 5 4 33 33 H 1.09002 * 109.47029 * 307.93522 * 7 6 5 34 34 H 1.08996 * 109.46738 * 187.93462 * 7 6 5 35 35 H 1.08995 * 109.47279 * 47.89558 * 9 8 7 36 36 H 1.08999 * 109.46630 * 167.89839 * 9 8 7 37 37 H 0.96999 * 120.00231 * 180.02562 * 13 12 10 38 38 H 1.08994 * 109.47506 * 45.75837 * 18 8 7 39 39 H 1.09005 * 109.47251 * 285.75655 * 18 8 7 40 40 H 1.08001 * 126.58097 * 0.04621 * 20 19 18 41 41 H 1.08000 * 126.57256 * 179.97438 * 21 20 19 42 42 H 1.08009 * 125.78562 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 8 3.9648 0.5796 -1.2220 6 6 5.3812 0.4201 -1.3250 7 6 5.7246 -0.2342 -2.6648 8 7 5.4199 0.6989 -3.7577 9 6 6.1818 0.3599 -4.9671 10 6 7.6322 0.7145 -4.7628 11 1 7.9659 1.0951 -3.8088 12 6 8.5332 0.5529 -5.7938 13 7 9.7988 0.8629 -5.6158 14 14 7.9560 -0.1050 -7.4442 15 1 7.5446 1.0275 -8.3121 16 1 9.0636 -0.8502 -8.0947 17 1 6.8011 -1.0153 -7.2376 18 6 3.9778 0.7310 -4.0358 19 6 3.6587 1.9261 -4.8966 20 6 3.6515 1.9475 -6.2416 21 6 3.3018 3.2617 -6.6284 22 6 3.1168 3.9648 -5.4968 23 8 3.3289 3.1494 -4.4509 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8515 0.5681 0.8409 30 1 3.9785 2.1764 0.0890 31 1 5.7358 -0.2121 -0.5110 32 1 5.8623 1.3962 -1.2631 33 1 5.1345 -1.1425 -2.7874 34 1 6.7852 -0.4843 -2.6857 35 1 6.0933 -0.7083 -5.1648 36 1 5.7867 0.9203 -5.8144 37 1 10.4327 0.7495 -6.3412 38 1 3.4282 0.8021 -3.0973 39 1 3.6881 -0.1807 -4.5583 40 1 3.8705 1.1195 -6.8996 41 1 3.2031 3.6303 -7.6388 42 1 2.8396 5.0071 -5.4390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079509070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:40 Heat of formation + Delta-G solvation = -62.710910 kcal Electronic energy + Delta-G solvation = -23024.974736 eV Core-core repulsion = 19586.869516 eV Total energy + Delta-G solvation = -3438.105221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.04074 -38.51300 -37.54575 -36.20298 -32.55658 -32.47060 -31.07237 -30.06783 -28.65304 -27.08957 -26.32091 -24.21962 -22.52354 -22.13205 -21.21848 -20.44031 -19.64674 -17.09052 -16.92445 -16.67629 -16.62948 -15.68052 -15.62910 -15.31159 -15.22951 -14.53321 -14.23919 -14.04302 -13.66159 -13.27080 -12.85714 -12.62490 -12.41869 -12.35415 -12.28810 -11.99966 -11.67409 -11.55301 -11.41448 -11.14516 -10.98889 -10.69857 -10.50228 -10.14638 -9.84986 -9.77714 -9.44938 -9.27208 -9.20449 -8.52991 -8.00200 -7.38049 -6.02466 -3.98723 2.21443 3.07406 3.31369 3.38162 3.40002 3.49739 3.67731 3.87371 4.45114 4.83972 4.94914 5.11469 5.19419 5.20675 5.23419 5.31102 5.33794 5.46790 5.47103 5.50166 5.56752 5.63114 5.75680 5.75851 5.84021 5.91425 6.16862 6.25222 6.32783 6.38711 6.53782 6.63567 6.88198 6.94713 6.99115 7.03384 7.46783 7.62546 7.66123 7.93790 8.02436 8.68377 9.06015 9.60032 11.10792 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.005203 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.178968 B = 5380.237461 C = 6558.102132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.378 6.378 6 C 0.067 3.933 7 C 0.066 3.934 8 N -0.520 5.520 9 C 0.154 3.846 10 C -0.505 4.505 11 H 0.080 0.920 12 C 0.070 3.930 13 N -0.901 5.901 14 Si 0.871 3.129 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.268 1.268 18 C 0.118 3.882 19 C 0.028 3.972 20 C -0.218 4.218 21 C -0.211 4.211 22 C -0.058 4.058 23 O -0.170 6.170 24 H 0.084 0.916 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.034 0.966 34 H 0.105 0.895 35 H -0.012 1.012 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.110 0.890 39 H 0.051 0.949 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.445 1.655 8.334 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.298 6.298 6 C -0.009 4.009 7 C -0.062 4.062 8 N -0.244 5.244 9 C 0.028 3.972 10 C -0.543 4.543 11 H 0.098 0.902 12 C -0.132 4.132 13 N -0.541 5.541 14 Si 0.699 3.301 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.193 1.193 18 C -0.010 4.010 19 C -0.023 4.023 20 C -0.238 4.238 21 C -0.230 4.230 22 C -0.125 4.125 23 O -0.065 6.065 24 H 0.102 0.898 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.123 0.877 35 H 0.006 0.994 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.128 0.872 39 H 0.069 0.931 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -17.149 1.967 8.554 19.265 hybrid contribution -0.341 -0.610 -1.440 1.600 sum -17.490 1.357 7.114 18.930 Atomic orbital electron populations 1.22721 0.81458 1.02631 0.99734 1.87968 1.19256 1.27583 1.95343 1.22592 0.92913 0.85210 1.00651 1.22427 0.92776 0.97734 0.88397 1.87893 1.23229 1.81891 1.36746 1.22717 0.80482 1.00341 0.97391 1.22088 1.02355 0.92714 0.89068 1.61861 1.02989 1.50751 1.08825 1.20336 0.94826 0.93832 0.88246 1.21003 0.89785 1.42823 1.00697 0.90206 1.24863 0.94784 0.95190 0.98339 1.69887 1.02354 1.48988 1.32825 0.86914 0.78615 0.79632 0.84978 1.20096 1.21256 1.19263 1.20789 0.91929 0.89277 0.98971 1.22459 1.01189 0.85289 0.93374 1.21555 1.08994 0.98584 0.94705 1.21721 1.07552 0.94517 0.99254 1.23823 1.07501 0.96377 0.84841 1.83998 1.67256 1.19491 1.35754 0.89771 0.94424 0.94054 0.92282 0.92301 0.92936 0.91887 0.93560 0.92223 0.94785 0.87705 0.99409 0.94901 0.92731 0.87170 0.93094 0.84191 0.84115 0.78784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.88 10.67 -40.08 -0.43 -5.31 16 3 C 0.06 0.70 6.32 37.16 0.23 0.93 16 4 C 0.06 0.78 6.32 37.16 0.23 1.01 16 5 O -0.38 -5.93 7.53 -40.08 -0.30 -6.23 16 6 C 0.07 1.08 6.25 37.16 0.23 1.31 16 7 C 0.07 1.24 5.35 -3.82 -0.02 1.21 16 8 N -0.52 -11.12 4.32 -237.52 -1.03 -12.14 16 9 C 0.15 3.77 3.63 -4.98 -0.02 3.75 16 10 C -0.50 -14.39 8.94 -34.44 -0.31 -14.69 16 11 H 0.08 2.46 7.87 -52.49 -0.41 2.04 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 14 Si 0.87 21.82 27.40 -169.99 -4.66 17.16 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.27 -6.45 6.64 56.52 0.38 -6.07 16 18 C 0.12 2.23 5.30 -4.98 -0.03 2.20 16 19 C 0.03 0.54 6.39 -35.62 -0.23 0.31 16 20 C -0.22 -4.07 9.27 -39.70 -0.37 -4.44 16 21 C -0.21 -3.44 10.91 -39.70 -0.43 -3.87 16 22 C -0.06 -0.89 12.09 29.41 0.36 -0.53 16 23 O -0.17 -3.12 10.65 5.72 0.06 -3.05 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.03 0.61 7.97 -51.93 -0.41 0.19 16 34 H 0.10 2.13 6.99 -51.93 -0.36 1.77 16 35 H -0.01 -0.29 7.35 -51.93 -0.38 -0.67 16 36 H 0.03 0.83 4.96 -51.93 -0.26 0.57 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.11 2.00 5.15 -51.93 -0.27 1.73 16 39 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.14 2.54 7.88 -52.49 -0.41 2.12 16 41 H 0.14 1.92 8.06 -52.49 -0.42 1.49 16 42 H 0.20 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -33.28 346.58 -6.43 -39.71 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.74 Total: 1.09 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 0.67 Total: -9.47 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -0.25 Total: -39.11 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.67 Total: -14.59 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.66 Total: 17.16 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.28 -6.43 -39.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079509070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.001 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds