Wall clock time and date at job start Tue Mar 31 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.68567 * 2 1 4 4 C 1.55318 * 110.62696 * 237.01279 * 2 1 3 5 5 C 1.53906 * 101.48779 * 203.35596 * 4 2 1 6 6 H 1.08995 * 103.94484 * 276.11552 * 5 4 2 7 7 C 1.49282 * 113.53522 * 161.84153 * 5 4 2 8 8 C 1.52558 * 113.31503 * 261.14987 * 7 5 4 9 9 C 1.53510 * 107.41093 * 305.92542 * 8 7 5 10 10 C 1.52225 * 107.92727 * 69.24753 * 9 8 7 11 11 C 1.50890 * 106.62362 * 27.12634 * 5 4 2 12 12 H 1.08997 * 108.23307 * 236.58722 * 11 5 4 13 13 N 1.48407 * 110.62603 * 122.98854 * 2 1 3 14 14 C 1.46907 * 111.00236 * 275.15361 * 13 2 1 15 15 C 1.53001 * 109.46864 * 306.41267 * 14 13 2 16 16 C 1.53004 * 109.46826 * 185.16193 * 15 14 13 17 17 S 1.81001 * 109.46970 * 179.97438 * 16 15 14 18 18 C 1.76197 * 100.00052 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99638 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00118 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99618 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99792 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46998 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47198 * 299.99844 * 22 20 18 25 25 H 1.48492 * 109.47499 * 59.99912 * 22 20 18 26 26 H 1.09005 * 109.47130 * 303.12761 * 1 2 3 27 27 H 1.08997 * 109.46920 * 63.12366 * 1 2 3 28 28 H 1.08997 * 109.46898 * 183.12485 * 1 2 3 29 29 H 1.08995 * 111.02653 * 85.30266 * 4 2 1 30 30 H 1.09007 * 111.02407 * 321.40675 * 4 2 1 31 31 H 1.08997 * 108.71647 * 140.15287 * 7 5 4 32 32 H 1.09003 * 108.61483 * 22.06314 * 7 5 4 33 33 H 1.08998 * 109.87313 * 186.45161 * 8 7 5 34 34 H 1.09000 * 109.93110 * 65.43832 * 8 7 5 35 35 H 1.08998 * 109.77139 * 309.63890 * 9 8 7 36 36 H 1.09005 * 109.81442 * 188.87713 * 9 8 7 37 37 H 1.08998 * 108.79374 * 180.65351 * 10 9 8 38 38 H 1.08997 * 108.79173 * 62.42789 * 10 9 8 39 39 H 1.08995 * 109.47522 * 186.40716 * 14 13 2 40 40 H 1.09001 * 109.46634 * 66.40941 * 14 13 2 41 41 H 1.08997 * 109.47547 * 65.16049 * 15 14 13 42 42 H 1.09005 * 109.46734 * 305.15530 * 15 14 13 43 43 H 1.08997 * 109.47175 * 59.99628 * 16 15 14 44 44 H 1.09005 * 109.46923 * 299.99222 * 16 15 14 45 45 H 0.96995 * 120.00280 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0772 -0.7914 -1.2193 5 6 3.4811 -1.1836 -0.7252 6 1 4.0913 -0.3078 -0.9458 7 6 4.0930 -2.3052 -1.4972 8 6 3.9533 -3.6592 -0.8083 9 6 4.5248 -3.5146 0.6091 10 6 3.5848 -2.6193 1.4042 11 6 3.4062 -1.2489 0.7804 12 1 4.1571 -0.5727 1.1889 13 7 2.0528 -0.7562 1.1650 14 6 2.1230 0.0975 2.3585 15 6 2.9221 1.3616 2.0349 16 6 3.1052 2.1891 3.3087 17 16 4.0512 3.6841 2.9262 18 6 4.1102 4.4259 4.5233 19 1 3.6377 3.9380 5.3630 20 6 4.7646 5.6368 4.7023 21 7 5.3408 6.2311 3.6789 22 14 4.8278 6.4228 6.3957 23 1 5.5790 7.7016 6.3201 24 1 3.4458 6.6884 6.8700 25 1 5.5081 5.5038 7.3431 26 1 -0.3634 0.5616 0.8607 27 1 -0.3633 0.4646 -0.9166 28 1 -0.3633 -1.0261 0.0560 29 1 2.1370 -0.1562 -2.1029 30 1 1.4707 -1.6756 -1.4157 31 1 5.1525 -2.0936 -1.6412 32 1 3.6119 -2.3585 -2.4739 33 1 4.5143 -4.4145 -1.3586 34 1 2.9022 -3.9432 -0.7568 35 1 5.5148 -3.0610 0.5629 36 1 4.5898 -4.4940 1.0830 37 1 3.9839 -2.4974 2.4111 38 1 2.6110 -3.1043 1.4712 39 1 2.6138 -0.4459 3.1657 40 1 1.1148 0.3740 2.6671 41 1 2.3843 1.9514 1.2927 42 1 3.8987 1.0826 1.6393 43 1 3.6430 1.5993 4.0510 44 1 2.1286 2.4680 3.7044 45 1 5.3083 5.8227 2.7997 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080629322.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:15 Heat of formation + Delta-G solvation = -30.373117 kcal Electronic energy + Delta-G solvation = -20850.882592 eV Core-core repulsion = 17992.765608 eV Total energy + Delta-G solvation = -2858.116983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.52582 -36.63306 -34.05795 -32.55151 -31.94936 -30.93906 -29.13776 -26.04354 -25.35460 -24.52199 -22.64888 -22.08436 -21.74374 -19.47629 -18.51291 -18.11254 -16.69110 -15.64238 -14.99186 -14.92263 -14.60683 -14.45471 -13.90381 -13.84840 -13.66718 -13.26426 -13.13603 -12.77411 -12.51585 -12.39406 -12.14201 -11.96933 -11.83902 -11.54914 -11.49435 -11.30444 -11.08824 -11.01413 -10.91551 -10.79208 -10.36539 -10.29197 -10.18238 -10.11079 -9.92261 -9.50128 -9.01546 -8.33383 -8.22418 -6.71759 -6.63645 -4.01651 3.26971 3.36962 3.41541 3.57111 3.87429 4.24741 4.39619 4.51337 4.53714 4.89444 4.94944 4.97653 5.12130 5.15933 5.21380 5.24259 5.26983 5.28401 5.40985 5.48071 5.51510 5.55111 5.59781 5.60770 5.64754 5.72618 5.80203 5.84456 5.87364 5.93668 5.99992 6.01343 6.10294 6.12456 6.15550 6.20755 6.27128 6.29356 6.38257 6.45156 6.60977 7.00096 7.11884 7.93674 8.49025 9.26447 10.80645 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.025720 B = 0.003472 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.392331 B = 8062.432933 C = 8379.595133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.048 3.952 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.092 4.092 6 H 0.053 0.947 7 C -0.100 4.100 8 C -0.116 4.116 9 C -0.118 4.118 10 C -0.103 4.103 11 C 0.078 3.922 12 H 0.057 0.943 13 N -0.510 5.510 14 C 0.049 3.951 15 C -0.137 4.137 16 C -0.085 4.085 17 S -0.194 6.194 18 C -0.588 4.588 19 H 0.065 0.935 20 C 0.033 3.967 21 N -0.887 5.887 22 Si 1.084 2.916 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.997 -19.067 -9.503 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.060 4.060 3 H 0.084 0.916 4 C -0.151 4.151 5 C -0.111 4.111 6 H 0.071 0.929 7 C -0.138 4.138 8 C -0.154 4.154 9 C -0.155 4.155 10 C -0.141 4.141 11 C -0.030 4.030 12 H 0.075 0.925 13 N -0.233 5.233 14 C -0.081 4.081 15 C -0.176 4.176 16 C -0.234 4.234 17 S 0.033 5.967 18 C -0.736 4.736 19 H 0.083 0.917 20 C -0.177 4.177 21 N -0.521 5.521 22 Si 0.910 3.090 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.336 -17.777 -9.532 20.865 hybrid contribution -0.526 -0.840 0.411 1.073 sum -5.863 -18.617 -9.121 21.544 Atomic orbital electron populations 1.21630 0.93982 1.02092 1.01311 1.22910 0.95955 0.96862 0.90284 0.91611 1.22653 0.95633 0.99816 0.96997 1.20366 0.97391 0.98960 0.94418 0.92866 1.20573 1.00454 0.94188 0.98543 1.21523 1.01215 0.96545 0.96067 1.21475 0.98977 0.99338 0.95760 1.21038 1.00228 0.94491 0.98337 1.21540 0.90929 0.96884 0.93665 0.92450 1.65175 1.20299 1.34170 1.03618 1.22349 1.00536 0.92015 0.93171 1.22007 1.00866 0.96777 0.97989 1.22995 1.02248 0.99104 0.99085 1.84139 1.71144 1.21934 1.19437 1.23526 1.45152 1.11988 0.92903 0.91667 1.26090 0.92446 0.93504 1.05664 1.70801 1.39760 1.40102 1.01435 0.83332 0.76690 0.76268 0.72756 1.20267 1.21114 1.21113 0.92737 0.92544 0.92101 0.91218 0.90911 0.92279 0.91984 0.92160 0.91700 0.92062 0.91957 0.92626 0.90979 0.90791 0.90592 0.91253 0.91546 0.91954 0.91874 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 9.55 37.16 0.35 -1.05 16 2 C 0.05 0.57 2.75 -65.65 -0.18 0.39 16 3 H 0.07 0.89 5.43 -51.93 -0.28 0.60 16 4 C -0.11 -1.16 5.82 -25.03 -0.15 -1.31 16 5 C -0.09 -0.99 2.45 -93.04 -0.23 -1.22 16 6 H 0.05 0.63 7.99 -51.93 -0.42 0.21 16 7 C -0.10 -0.90 5.41 -28.79 -0.16 -1.05 16 8 C -0.12 -0.97 6.08 -26.69 -0.16 -1.14 16 9 C -0.12 -1.07 5.98 -26.86 -0.16 -1.23 16 10 C -0.10 -1.11 5.42 -27.82 -0.15 -1.26 16 11 C 0.08 0.93 2.48 -68.26 -0.17 0.76 16 12 H 0.06 0.79 5.73 -51.93 -0.30 0.49 16 13 N -0.51 -6.35 4.59 -216.38 -0.99 -7.34 16 14 C 0.05 0.68 5.35 -3.82 -0.02 0.66 16 15 C -0.14 -2.26 4.43 -26.73 -0.12 -2.38 16 16 C -0.08 -1.74 5.67 37.16 0.21 -1.53 16 17 S -0.19 -5.13 20.46 -107.50 -2.20 -7.33 16 18 C -0.59 -17.32 9.50 30.94 0.29 -17.02 16 19 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 20 C 0.03 0.97 5.49 -17.43 -0.10 0.87 16 21 N -0.89 -27.64 13.67 55.49 0.76 -26.89 16 22 Si 1.08 25.32 29.92 -169.99 -5.09 20.23 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H 0.05 0.61 7.92 -51.93 -0.41 0.20 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.51 7.81 -51.93 -0.41 0.10 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.81 7.94 -51.93 -0.41 0.39 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.03 7.92 -51.93 -0.41 0.62 16 41 H 0.07 1.17 6.19 -51.93 -0.32 0.85 16 42 H 0.07 1.14 6.13 -51.93 -0.32 0.82 16 43 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 44 H 0.06 1.30 8.14 -51.91 -0.42 0.87 16 45 H 0.28 8.72 7.12 -40.82 -0.29 8.43 16 LS Contribution 350.02 15.07 5.27 5.27 Total: -1.00 -31.11 350.02 -11.23 -42.35 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -8.26 Total: 0.20 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: -0.73 Total: -26.50 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: -0.23 Total: -34.23 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.09 Total: 20.23 kcal Atomic # 16 Polarization: -5.13 SS G_CDS: -2.20 Total: -7.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.11 -11.23 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080629322.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.973 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds