Wall clock time and date at job start Tue Mar 31 2020 06:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.00844 * 2 1 4 4 C 1.54997 * 109.98655 * 238.69895 * 2 1 3 5 5 C 1.52957 * 103.95948 * 243.05371 * 4 2 1 6 6 H 1.08996 * 110.33002 * 89.50154 * 5 4 2 7 7 C 1.51763 * 115.99862 * 215.81868 * 5 4 2 8 8 C 1.53827 * 107.22332 * 176.75519 * 7 5 4 9 9 C 1.52573 * 112.04434 * 303.28135 * 8 7 5 10 10 C 1.53756 * 111.43703 * 54.36795 * 9 8 7 11 11 C 1.51599 * 107.30539 * 302.41390 * 10 9 8 12 12 H 1.08997 * 110.24592 * 304.94957 * 11 10 9 13 13 N 1.46650 * 116.85654 * 178.55960 * 11 10 9 14 14 C 1.46907 * 110.99682 * 80.38495 * 13 11 10 15 15 C 1.53001 * 109.46867 * 170.00126 * 14 13 11 16 16 C 1.53007 * 109.46862 * 179.97438 * 15 14 13 17 17 S 1.81001 * 109.46919 * 180.02562 * 16 15 14 18 18 C 1.76199 * 99.99912 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99718 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00222 * 179.97438 * 18 17 16 21 21 N 1.31632 * 119.99866 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00082 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47164 * 90.00178 * 22 20 18 24 24 H 1.48508 * 109.47314 * 209.99863 * 22 20 18 25 25 H 1.48499 * 109.47465 * 330.00182 * 22 20 18 26 26 H 1.09003 * 109.47537 * 179.84447 * 1 2 3 27 27 H 1.08999 * 109.47111 * 299.84570 * 1 2 3 28 28 H 1.08996 * 109.47238 * 59.84864 * 1 2 3 29 29 H 1.08995 * 110.53020 * 124.43128 * 4 2 1 30 30 H 1.09004 * 110.53055 * 1.66836 * 4 2 1 31 31 H 1.09002 * 109.89657 * 296.77291 * 7 5 4 32 32 H 1.09000 * 109.89588 * 57.89058 * 7 5 4 33 33 H 1.09001 * 109.08917 * 182.39932 * 8 7 5 34 34 H 1.08995 * 108.43540 * 63.72792 * 8 7 5 35 35 H 1.09001 * 109.08435 * 293.86333 * 9 8 7 36 36 H 1.09000 * 109.08231 * 174.87303 * 9 8 7 37 37 H 1.09004 * 109.88547 * 182.96749 * 10 9 8 38 38 H 1.09003 * 109.95245 * 61.90498 * 10 9 8 39 39 H 1.08999 * 109.47024 * 289.99699 * 14 13 11 40 40 H 1.08998 * 109.47310 * 49.99964 * 14 13 11 41 41 H 1.08999 * 109.46950 * 299.99619 * 15 14 13 42 42 H 1.08998 * 109.47287 * 59.99825 * 15 14 13 43 43 H 1.08994 * 109.46677 * 299.99845 * 16 15 14 44 44 H 1.09000 * 109.46791 * 59.99854 * 16 15 14 45 45 H 0.96998 * 119.99866 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0598 -0.7568 -1.2446 5 6 2.8180 -1.9481 -0.6570 6 1 2.1475 -2.7978 -0.5288 7 6 4.0698 -2.3731 -1.4023 8 6 4.7099 -3.5197 -0.6011 9 6 5.0117 -3.1135 0.8383 10 6 3.7589 -2.5669 1.5425 11 6 3.2587 -1.3922 0.7251 12 1 4.0538 -0.6583 0.5936 13 7 2.0395 -0.7279 1.1973 14 6 2.3386 0.2046 2.2924 15 6 1.1021 1.0553 2.5897 16 6 1.4134 2.0261 3.7307 17 16 -0.0496 3.0320 4.0830 18 6 0.5736 4.0293 5.3951 19 1 1.5904 3.9001 5.7355 20 6 -0.2422 4.9808 5.9913 21 7 -1.4814 5.1386 5.5762 22 14 0.4182 6.0376 7.3828 23 1 1.0260 7.2711 6.8221 24 1 -0.6936 6.4048 8.2962 25 1 1.4473 5.2772 8.1364 26 1 -0.3634 -1.0277 -0.0028 27 1 -0.3633 0.5114 0.8914 28 1 -0.3633 0.5162 -0.8886 29 1 2.7328 -0.1215 -1.8204 30 1 1.2315 -1.0992 -1.8650 31 1 3.8079 -2.7105 -2.4052 32 1 4.7679 -1.5381 -1.4614 33 1 5.6373 -3.8207 -1.0882 34 1 4.0201 -4.3636 -0.5960 35 1 5.7841 -2.3444 0.8371 36 1 5.3770 -3.9830 1.3848 37 1 4.0141 -2.2362 2.5493 38 1 2.9916 -3.3396 1.5894 39 1 2.6150 -0.3585 3.1838 40 1 3.1647 0.8534 2.0018 41 1 0.8257 1.6185 1.6984 42 1 0.2759 0.4065 2.8804 43 1 1.6896 1.4626 4.6219 44 1 2.2397 2.6749 3.4405 45 1 -2.0516 5.8033 5.9931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080629332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:18 Heat of formation + Delta-G solvation = -30.543994 kcal Electronic energy + Delta-G solvation = -20563.048899 eV Core-core repulsion = 17704.924506 eV Total energy + Delta-G solvation = -2858.124393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47592 -36.70808 -33.92725 -32.41808 -32.03406 -30.60325 -29.19594 -26.02195 -25.72866 -24.82227 -22.00197 -21.48849 -21.26540 -20.16672 -19.44748 -17.44324 -16.00522 -15.51324 -15.13809 -14.82604 -14.78722 -14.58582 -14.33299 -14.01674 -13.45062 -13.11044 -12.85866 -12.76910 -12.58442 -12.32881 -12.12015 -11.95542 -11.68343 -11.45247 -11.31476 -11.05903 -11.03346 -10.91463 -10.83255 -10.64626 -10.59364 -10.57368 -10.30465 -10.24069 -10.00141 -9.46635 -9.03822 -8.37754 -8.26974 -6.49919 -6.20750 -3.90529 3.22717 3.23668 3.30321 3.57443 3.86188 4.24494 4.32543 4.48449 4.62160 4.81782 4.90597 5.04214 5.12244 5.15167 5.15465 5.26802 5.30112 5.35937 5.37798 5.42008 5.53537 5.54651 5.60433 5.69832 5.74839 5.78360 5.79344 5.83650 5.89819 5.90836 5.97878 6.00672 6.07995 6.11567 6.14909 6.25113 6.28556 6.33533 6.52274 6.64966 6.79444 6.99796 7.21494 7.62572 8.38786 9.25535 10.87478 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.033093 B = 0.003103 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.894690 B = 9020.592328 C = 9623.159625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 H 0.055 0.945 4 C -0.122 4.122 5 C -0.092 4.092 6 H 0.081 0.919 7 C -0.108 4.108 8 C -0.118 4.118 9 C -0.116 4.116 10 C -0.102 4.102 11 C 0.063 3.937 12 H 0.045 0.955 13 N -0.502 5.502 14 C 0.051 3.949 15 C -0.098 4.098 16 C -0.113 4.113 17 S -0.132 6.132 18 C -0.515 4.515 19 H 0.072 0.928 20 C 0.070 3.930 21 N -0.870 5.870 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.815 -16.045 -14.005 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.046 4.046 3 H 0.073 0.927 4 C -0.160 4.160 5 C -0.111 4.111 6 H 0.099 0.901 7 C -0.146 4.146 8 C -0.155 4.155 9 C -0.154 4.154 10 C -0.140 4.140 11 C -0.046 4.046 12 H 0.063 0.937 13 N -0.226 5.226 14 C -0.078 4.078 15 C -0.137 4.137 16 C -0.262 4.262 17 S 0.096 5.904 18 C -0.664 4.664 19 H 0.090 0.910 20 C -0.138 4.138 21 N -0.506 5.506 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.218 -16.314 -14.230 23.529 hybrid contribution 2.247 1.416 1.278 2.948 sum 11.465 -14.898 -12.953 22.829 Atomic orbital electron populations 1.21973 0.93639 1.02234 1.02364 1.22760 0.96650 0.96138 0.89083 0.92657 1.22339 0.99804 0.96766 0.97064 1.21800 0.96300 0.98101 0.94874 0.90053 1.21444 0.96335 0.98443 0.98408 1.21541 1.00410 0.98282 0.95316 1.21516 0.97684 1.00746 0.95498 1.21291 0.97151 0.97124 0.98413 1.22343 0.91804 0.95602 0.94835 0.93711 1.64712 1.25346 1.26375 1.06125 1.22345 0.97301 0.93664 0.94493 1.21487 0.97293 0.96696 0.98217 1.23250 1.03040 1.00231 0.99693 1.84600 1.15519 1.43167 1.47126 1.22693 1.01003 1.22486 1.20195 0.91026 1.25012 0.94698 0.96698 0.97412 1.70025 1.06153 1.33449 1.40937 0.86173 0.78518 0.80039 0.80842 1.20308 1.20750 1.19693 0.92299 0.90986 0.92766 0.91740 0.90900 0.91659 0.92058 0.92226 0.92164 0.92341 0.91854 0.91896 0.91055 0.90768 0.95061 0.91220 0.90731 0.92181 0.92471 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.91 37.16 0.33 -1.45 16 2 C 0.06 0.75 2.45 -65.44 -0.16 0.59 16 3 H 0.06 0.73 7.26 -51.93 -0.38 0.35 16 4 C -0.12 -1.21 6.24 -25.70 -0.16 -1.37 16 5 C -0.09 -0.88 2.50 -90.02 -0.23 -1.10 16 6 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 7 C -0.11 -0.86 5.66 -26.93 -0.15 -1.01 16 8 C -0.12 -0.87 5.82 -26.52 -0.15 -1.02 16 9 C -0.12 -0.93 5.86 -26.56 -0.16 -1.09 16 10 C -0.10 -1.00 5.90 -27.05 -0.16 -1.16 16 11 C 0.06 0.69 1.64 -67.31 -0.11 0.58 16 12 H 0.04 0.53 7.77 -51.93 -0.40 0.12 16 13 N -0.50 -6.48 4.98 -215.27 -1.07 -7.55 16 14 C 0.05 0.74 4.93 -3.82 -0.02 0.72 16 15 C -0.10 -1.67 3.83 -26.73 -0.10 -1.77 16 16 C -0.11 -2.34 5.67 37.16 0.21 -2.13 16 17 S -0.13 -3.52 21.44 -107.50 -2.30 -5.82 16 18 C -0.52 -15.01 9.50 30.94 0.29 -14.72 16 19 H 0.07 2.02 7.80 -52.49 -0.41 1.62 16 20 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 21 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 22 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.02 5.29 -51.93 -0.27 0.75 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 30 H 0.07 0.67 7.72 -51.93 -0.40 0.27 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.03 0.45 7.89 -51.93 -0.41 0.04 16 41 H 0.07 1.19 5.58 -51.93 -0.29 0.90 16 42 H 0.07 1.32 7.78 -51.93 -0.40 0.91 16 43 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 44 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 352.15 15.07 5.31 5.31 Total: -1.00 -30.41 352.15 -11.45 -41.86 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -8.43 Total: -2.02 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -0.66 Total: -22.99 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: -0.34 Total: -33.09 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.41 -11.45 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080629332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.315 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds