Wall clock time and date at job start Tue Mar 31 2020 06:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47061 * 2 1 4 4 C 1.53001 * 109.47255 * 120.00210 * 2 1 3 5 5 O 1.42894 * 109.46957 * 175.00231 * 4 2 1 6 6 C 1.42908 * 113.99701 * 179.97438 * 5 4 2 7 7 H 1.08996 * 109.46962 * 29.99744 * 6 5 4 8 8 C 1.52997 * 109.46936 * 269.99390 * 6 5 4 9 9 C 1.50705 * 109.46828 * 149.99846 * 6 5 4 10 10 N 1.29945 * 126.29239 * 45.02168 * 9 6 5 11 11 O 1.21298 * 110.25315 * 179.97438 * 10 9 6 12 12 C 1.33643 * 109.80930 * 359.97438 * 11 10 9 13 13 C 1.50701 * 126.54889 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47226 * 270.03214 * 13 12 11 15 15 C 1.46502 * 119.99842 * 269.99878 * 14 13 12 16 16 C 1.36932 * 120.00442 * 90.00138 * 14 13 12 17 17 H 1.08008 * 119.99645 * 342.17921 * 16 14 13 18 18 C 1.38808 * 120.00337 * 162.45258 * 16 14 13 19 19 N 1.31618 * 120.00326 * 344.97928 * 18 16 14 20 20 Si 1.86805 * 119.99984 * 164.97326 * 18 16 14 21 21 H 1.48498 * 109.47123 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47191 * 120.00384 * 20 18 16 23 23 H 1.48500 * 109.47194 * 240.00004 * 20 18 16 24 24 N 1.31126 * 106.89703 * 0.23023 * 12 11 10 25 25 H 1.08998 * 109.46801 * 300.00015 * 1 2 3 26 26 H 1.08992 * 109.47280 * 59.99938 * 1 2 3 27 27 H 1.09004 * 109.46670 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46801 * 239.99985 * 2 1 3 29 29 H 1.09000 * 109.47166 * 299.99908 * 3 2 1 30 30 H 1.08998 * 109.47325 * 60.00307 * 3 2 1 31 31 H 1.08995 * 109.47171 * 180.02562 * 3 2 1 32 32 H 1.08992 * 109.47117 * 54.99570 * 4 2 1 33 33 H 1.09004 * 109.46584 * 294.99513 * 4 2 1 34 34 H 1.09002 * 109.47244 * 300.00201 * 8 6 5 35 35 H 1.09007 * 109.47220 * 60.00300 * 8 6 5 36 36 H 1.09000 * 109.47249 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.46996 * 150.02551 * 13 12 11 38 38 H 1.09004 * 109.47115 * 30.02855 * 13 12 11 39 39 H 1.09005 * 109.47194 * 264.96272 * 15 14 13 40 40 H 1.09001 * 109.47214 * 24.95921 * 15 14 13 41 41 H 1.09002 * 109.47275 * 144.96392 * 15 14 13 42 42 H 0.96993 * 119.99972 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 3.4642 -0.8238 1.1919 6 6 4.0451 -1.4846 2.3180 7 1 3.3408 -2.2168 2.7127 8 6 4.3710 -0.4547 3.4015 9 6 5.3106 -2.1836 1.8924 10 7 6.2469 -1.6884 1.1396 11 8 7.1332 -2.5014 0.9822 12 6 6.8377 -3.6265 1.6401 13 6 7.6756 -4.8777 1.6998 14 7 7.3023 -5.7685 0.5983 15 6 6.2432 -6.7629 0.7872 16 6 7.9433 -5.6717 -0.6079 17 1 8.5042 -4.7814 -0.8514 18 6 7.8675 -6.7154 -1.5199 19 7 7.4436 -7.8994 -1.1314 20 14 8.3670 -6.4396 -3.2987 21 1 8.8044 -5.0318 -3.4774 22 1 9.4854 -7.3528 -3.6461 23 1 7.2090 -6.7153 -4.1865 24 7 5.6768 -3.4357 2.2192 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6055 -1.7197 1.2951 33 1 1.7518 -0.1583 2.1369 34 1 5.0754 0.2775 3.0067 35 1 3.4557 0.0509 3.7093 36 1 4.8145 -0.9587 4.2602 37 1 7.5056 -5.3838 2.6501 38 1 8.7296 -4.6137 1.6122 39 1 6.6876 -7.7189 1.0642 40 1 5.5710 -6.4319 1.5788 41 1 5.6830 -6.8779 -0.1407 42 1 7.3910 -8.6288 -1.7687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080631617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:51 Heat of formation + Delta-G solvation = 33.600482 kcal Electronic energy + Delta-G solvation = -22606.193497 eV Core-core repulsion = 19204.557402 eV Total energy + Delta-G solvation = -3401.636094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.89521 -38.77841 -36.05353 -35.85388 -34.72381 -32.61826 -31.21572 -30.34730 -27.33912 -27.04211 -26.38011 -25.93934 -24.47654 -22.97886 -21.67829 -20.52322 -20.16063 -17.47866 -17.06405 -16.90946 -16.73799 -15.77840 -15.43522 -15.00573 -14.52343 -14.17564 -13.97125 -13.59327 -13.42151 -13.24295 -12.86643 -12.55060 -12.33432 -12.26839 -12.23807 -11.80358 -11.40594 -11.25763 -11.23884 -11.17738 -11.01939 -10.89876 -10.79702 -10.73592 -10.51262 -10.42953 -10.09059 -10.02815 -9.78287 -9.33443 -8.70018 -7.12288 -5.89319 -3.34797 1.81077 2.67183 3.32214 3.34950 3.41436 3.44962 3.62541 4.14727 4.40793 4.58749 4.65916 4.74880 4.88149 4.96718 5.07001 5.21395 5.29831 5.31978 5.40191 5.42086 5.43716 5.50699 5.59679 5.65587 5.75398 5.81552 5.87664 5.99999 6.04681 6.10903 6.18312 6.21588 6.35767 6.60974 6.70336 7.07089 7.31059 7.58936 7.72182 8.16645 8.80523 9.03935 9.63935 10.07399 11.15513 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.017456 B = 0.004005 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.603269 B = 6990.190104 C = 7724.437487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.144 4.144 4 C 0.065 3.935 5 O -0.370 6.370 6 C 0.187 3.813 7 H 0.087 0.913 8 C -0.165 4.165 9 C 0.153 3.847 10 N -0.376 5.376 11 O 0.074 5.926 12 C 0.191 3.809 13 C 0.226 3.774 14 N -0.576 5.576 15 C 0.156 3.844 16 C -0.275 4.275 17 H 0.078 0.922 18 C 0.011 3.989 19 N -0.900 5.900 20 Si 0.908 3.092 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.288 1.288 24 N -0.497 5.497 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.038 0.962 40 H 0.008 0.992 41 H 0.049 0.951 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.014 13.377 7.822 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.011 4.011 5 O -0.288 6.288 6 C 0.127 3.873 7 H 0.105 0.895 8 C -0.223 4.223 9 C -0.121 4.121 10 N -0.086 5.086 11 O 0.016 5.984 12 C -0.034 4.034 13 C 0.092 3.908 14 N -0.296 5.296 15 C 0.012 3.988 16 C -0.404 4.404 17 H 0.096 0.904 18 C -0.188 4.188 19 N -0.543 5.543 20 Si 0.737 3.263 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.214 1.214 24 N -0.233 5.233 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.057 0.943 40 H 0.026 0.974 41 H 0.068 0.932 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.332 13.936 7.439 18.875 hybrid contribution 0.002 -0.175 -0.946 0.962 sum -10.330 13.761 6.493 18.391 Atomic orbital electron populations 1.21782 0.94276 1.02055 1.02124 1.21099 0.95390 0.96992 0.97994 1.21780 1.02173 0.94950 1.01193 1.22679 0.80800 0.99440 0.98217 1.88000 1.20061 1.78118 1.42589 1.19826 0.88243 0.92881 0.86301 0.89485 1.22223 1.02755 0.99363 0.98002 1.25315 0.98579 0.90011 0.98181 1.74529 1.00047 1.15533 1.18451 1.85318 1.37566 1.20222 1.55268 1.32012 0.93234 0.91638 0.86475 1.19565 0.94906 0.82490 0.93820 1.44097 1.39817 1.35923 1.09787 1.20990 0.88670 0.91101 0.98026 1.19371 1.28658 1.00680 0.91675 0.90379 1.24946 0.99920 0.94741 0.99193 1.70129 1.50311 1.00378 1.33496 0.86141 0.77808 0.77946 0.84423 1.19957 1.21394 1.21420 1.71805 1.11643 1.13632 1.26185 0.92557 0.91996 0.92436 0.90224 0.92855 0.93000 0.91688 0.93085 0.93124 0.91245 0.91383 0.91061 0.89106 0.89264 0.94335 0.97387 0.93236 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.19 37.16 0.34 -0.82 16 2 C -0.10 -1.00 3.16 -90.61 -0.29 -1.28 16 3 C -0.14 -1.42 9.09 37.16 0.34 -1.08 16 4 C 0.07 0.74 5.13 37.16 0.19 0.93 16 5 O -0.37 -5.59 9.51 -35.23 -0.33 -5.92 16 6 C 0.19 2.76 3.27 -27.88 -0.09 2.67 16 7 H 0.09 1.17 7.79 -51.93 -0.40 0.76 16 8 C -0.17 -1.94 9.51 37.16 0.35 -1.58 16 9 C 0.15 2.87 7.10 -156.37 -1.11 1.76 16 10 N -0.38 -7.68 12.16 30.90 0.38 -7.31 16 11 O 0.07 1.54 11.31 18.10 0.20 1.74 16 12 C 0.19 3.83 8.10 -13.06 -0.11 3.72 16 13 C 0.23 4.41 6.27 -5.19 -0.03 4.37 16 14 N -0.58 -14.04 2.91 -182.49 -0.53 -14.58 16 15 C 0.16 3.79 8.97 59.85 0.54 4.33 16 16 C -0.28 -7.36 9.70 -15.06 -0.15 -7.50 16 17 H 0.08 2.05 7.87 -52.48 -0.41 1.63 16 18 C 0.01 0.31 5.08 -17.43 -0.09 0.22 16 19 N -0.90 -25.36 10.51 55.49 0.58 -24.78 16 20 Si 0.91 21.59 29.58 -169.99 -5.03 16.56 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 N -0.50 -9.88 11.55 -9.87 -0.11 -10.00 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16 32 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.05 0.47 7.87 -51.93 -0.41 0.07 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.63 7.87 -51.92 -0.41 0.22 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 38 H 0.09 1.58 8.04 -51.93 -0.42 1.16 16 39 H 0.04 0.97 7.48 -51.93 -0.39 0.58 16 40 H 0.01 0.17 8.03 -51.93 -0.42 -0.25 16 41 H 0.05 1.32 7.01 -51.93 -0.36 0.95 16 42 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -30.73 352.80 -6.61 -37.34 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -6.98 Total: -4.11 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.10 Total: 5.73 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.31 Total: -56.66 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.13 Total: -4.18 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.73 -6.61 -37.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080631617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.943 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds