Wall clock time and date at job start Tue Mar 31 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46904 * 109.47187 * 2 1 4 4 C 1.46906 * 110.99675 * 294.68758 * 3 2 1 5 5 C 1.50696 * 109.47401 * 284.17060 * 4 3 2 6 6 H 1.08006 * 119.99810 * 4.11240 * 5 4 3 7 7 C 1.37873 * 119.99892 * 184.11373 * 5 4 3 8 8 N 1.31511 * 120.00363 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99804 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47168 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46671 * 120.00249 * 9 7 5 12 12 H 1.48498 * 109.47014 * 240.00095 * 9 7 5 13 13 C 1.46900 * 111.00125 * 58.64011 * 3 2 1 14 14 H 1.09000 * 109.47352 * 292.20786 * 13 3 2 15 15 C 1.53007 * 109.46646 * 52.21045 * 13 3 2 16 16 C 1.50699 * 109.46906 * 172.20680 * 13 3 2 17 17 C 1.39378 * 119.50493 * 314.54894 * 16 13 3 18 18 C 1.36097 * 120.98701 * 179.73077 * 17 16 13 19 19 C 1.40541 * 119.64968 * 0.55787 * 18 17 16 20 20 C 1.40538 * 121.27963 * 179.72344 * 19 18 17 21 21 C 1.36092 * 119.65453 * 180.02562 * 20 19 18 22 22 C 1.39375 * 120.98715 * 359.95297 * 21 20 19 23 23 C 1.36092 * 120.98856 * 0.02562 * 22 21 20 24 24 C 1.40536 * 119.65876 * 0.02562 * 23 22 21 25 25 C 1.36088 * 119.50126 * 134.82423 * 16 13 3 26 26 H 1.08995 * 109.47315 * 180.22155 * 1 2 3 27 27 H 1.08997 * 109.47088 * 300.22492 * 1 2 3 28 28 H 1.09004 * 109.46791 * 60.22188 * 1 2 3 29 29 H 1.09004 * 109.47022 * 119.99929 * 2 1 3 30 30 H 1.09003 * 109.47046 * 239.99583 * 2 1 3 31 31 H 1.09006 * 109.46953 * 44.17247 * 4 3 2 32 32 H 1.09000 * 109.46920 * 164.16653 * 4 3 2 33 33 H 0.97002 * 120.00508 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.46454 * 179.97438 * 15 13 3 35 35 H 1.08995 * 109.47148 * 299.99683 * 15 13 3 36 36 H 1.08998 * 109.46937 * 59.99836 * 15 13 3 37 37 H 1.07993 * 119.50763 * 359.97438 * 17 16 13 38 38 H 1.07992 * 120.17650 * 180.27782 * 18 17 16 39 39 H 1.08006 * 120.17314 * 0.02562 * 20 19 18 40 40 H 1.08002 * 119.50755 * 179.97438 * 21 20 19 41 41 H 1.07993 * 119.50483 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.16933 * 179.97438 * 23 22 21 43 43 H 1.07994 * 120.17918 * 359.95345 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6551 2.0723 -1.2462 5 6 2.5531 1.6013 -2.3609 6 1 3.2737 0.8174 -2.1793 7 6 2.4550 2.1710 -3.6126 8 7 1.5780 3.1258 -3.8336 9 14 3.5687 1.5876 -4.9942 10 1 4.4603 0.5122 -4.4907 11 1 2.7404 1.0618 -6.1090 12 1 4.3901 2.7247 -5.4815 13 6 1.5223 2.1193 1.1711 14 1 0.4442 2.2540 1.0845 15 6 1.8370 1.3266 2.4414 16 6 2.1930 3.4670 1.2409 17 6 3.5704 3.5591 1.0488 18 6 4.2062 4.7614 1.1000 19 6 3.4674 5.9279 1.3618 20 6 4.0897 7.1862 1.4281 21 6 3.3424 8.2944 1.6843 22 6 1.9658 8.2016 1.8817 23 6 1.3291 7.0002 1.8244 24 6 2.0678 5.8335 1.5631 25 6 1.4454 4.5751 1.4963 26 1 -0.3634 -1.0276 0.0040 27 1 -0.3633 0.5173 0.8879 28 1 -0.3633 0.5104 -0.8920 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 0.6181 1.8471 -1.4952 32 1 1.7720 3.1480 -1.1153 33 1 1.5087 3.5264 -4.7143 34 1 1.4683 1.8716 3.3104 35 1 1.3520 0.3518 2.3908 36 1 2.9152 1.1919 2.5279 37 1 4.1411 2.6636 0.8525 38 1 5.2734 4.8181 0.9447 39 1 5.1555 7.2734 1.2764 40 1 3.8232 9.2602 1.7351 41 1 1.3959 9.0966 2.0830 42 1 0.2619 6.9436 1.9798 43 1 0.3796 4.4881 1.6468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:16 Heat of formation + Delta-G solvation = 43.194757 kcal Electronic energy + Delta-G solvation = -22262.352793 eV Core-core repulsion = 19271.982001 eV Total energy + Delta-G solvation = -2990.370792 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.12071 -38.14299 -35.77519 -32.85064 -32.43447 -31.39961 -29.43765 -29.13382 -28.35667 -25.97558 -23.95795 -22.95525 -22.53106 -21.61347 -21.37511 -18.89944 -16.90376 -16.45873 -16.23794 -15.95697 -15.18310 -14.64641 -14.46126 -14.19490 -13.78335 -13.48983 -13.23686 -13.02020 -12.93006 -12.71557 -12.25594 -11.91396 -11.88227 -11.73102 -11.63150 -11.23989 -11.10491 -10.91075 -10.80775 -10.60165 -10.52604 -10.41056 -10.21261 -10.05405 -9.70686 -9.54906 -9.16835 -8.37945 -8.06979 -7.51179 -7.19355 -5.96505 -3.96867 0.89524 1.39484 2.43011 3.33132 3.36136 3.40808 3.45080 4.44428 4.49199 4.80958 4.97976 5.07338 5.14363 5.27181 5.38619 5.41303 5.46710 5.61462 5.67607 5.72278 5.76041 5.82245 5.88333 5.91771 6.00343 6.06410 6.08976 6.22041 6.30835 6.38860 6.46317 6.49701 6.58847 6.61710 6.66230 6.72395 6.85260 6.99393 7.12333 7.16106 7.34286 7.43879 7.46706 7.86779 8.17567 8.26473 8.59358 9.10369 9.66376 11.13954 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013482 B = 0.005873 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.363268 B = 4766.674010 C = 6018.776337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.057 3.943 3 N -0.526 5.526 4 C 0.188 3.812 5 C -0.499 4.499 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.112 3.888 14 H 0.041 0.959 15 C -0.142 4.142 16 C -0.044 4.044 17 C -0.066 4.066 18 C -0.121 4.121 19 C -0.052 4.052 20 C -0.105 4.105 21 C -0.128 4.128 22 C -0.128 4.128 23 C -0.104 4.104 24 C -0.048 4.048 25 C -0.115 4.115 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.079 0.921 31 H -0.005 1.005 32 H 0.034 0.966 33 H 0.259 0.741 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 4.071 13.408 14.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.071 4.071 3 N -0.250 5.250 4 C 0.063 3.937 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.003 3.997 14 H 0.059 0.941 15 C -0.199 4.199 16 C -0.045 4.045 17 C -0.084 4.084 18 C -0.139 4.139 19 C -0.052 4.052 20 C -0.123 4.123 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.122 4.122 24 C -0.048 4.048 25 C -0.134 4.134 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.013 0.987 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.233 4.167 13.292 13.984 hybrid contribution -0.451 -0.078 -1.151 1.239 sum 0.782 4.089 12.141 12.835 Atomic orbital electron populations 1.22432 0.99568 1.00986 1.01952 1.22050 0.91925 0.91569 1.01601 1.62435 1.58370 1.01375 1.02799 1.19823 0.94758 0.94499 0.84630 1.21160 1.19173 1.19787 0.93650 0.92032 1.24962 0.95761 0.95183 0.98700 1.69969 1.35459 1.25969 1.22370 0.86520 0.80656 0.78593 0.82120 1.19706 1.21244 1.21150 1.20553 0.95915 0.90693 0.92517 0.94135 1.21909 1.02402 0.99654 0.95967 1.19535 0.94010 0.94540 0.96395 1.20783 0.94151 0.98042 0.95417 1.20976 0.99495 0.91957 1.01456 1.18083 0.92874 0.93895 1.00336 1.20993 0.99560 0.91916 0.99791 1.20723 0.94184 0.98296 1.01449 1.20717 0.94730 0.97490 1.01659 1.20980 0.99343 0.92089 0.99805 1.17991 0.92823 0.93666 1.00348 1.20810 0.99234 0.91322 1.02004 0.93378 0.93505 0.91670 0.92323 0.90265 0.98700 0.94779 0.93146 0.93059 0.92194 0.91883 0.84958 0.86002 0.86043 0.86610 0.86595 0.86075 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.22 9.11 37.16 0.34 -2.88 16 2 C 0.06 1.04 5.42 -3.82 -0.02 1.02 16 3 N -0.53 -10.76 3.92 -229.46 -0.90 -11.66 16 4 C 0.19 4.78 4.47 -4.97 -0.02 4.75 16 5 C -0.50 -13.86 8.67 -34.44 -0.30 -14.16 16 6 H 0.06 1.70 7.64 -52.48 -0.40 1.30 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.11 1.97 1.62 -68.86 -0.11 1.86 16 14 H 0.04 0.74 6.48 -51.93 -0.34 0.40 16 15 C -0.14 -2.02 8.52 37.16 0.32 -1.71 16 16 C -0.04 -0.80 3.37 -104.97 -0.35 -1.16 16 17 C -0.07 -1.19 9.06 -39.93 -0.36 -1.55 16 18 C -0.12 -2.02 9.77 -39.48 -0.39 -2.41 16 19 C -0.05 -0.86 5.74 -106.83 -0.61 -1.48 16 20 C -0.10 -1.49 9.77 -39.49 -0.39 -1.87 16 21 C -0.13 -1.65 9.95 -39.93 -0.40 -2.05 16 22 C -0.13 -1.65 9.95 -39.93 -0.40 -2.05 16 23 C -0.10 -1.50 9.77 -39.49 -0.39 -1.89 16 24 C -0.05 -0.81 5.74 -106.83 -0.61 -1.42 16 25 C -0.12 -1.98 9.36 -39.49 -0.37 -2.35 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.73 6.17 -51.93 -0.32 0.41 16 28 H 0.06 1.28 6.27 -51.93 -0.33 0.96 16 29 H 0.06 0.93 6.29 -51.93 -0.33 0.60 16 30 H 0.08 1.59 7.40 -51.93 -0.38 1.20 16 31 H 0.00 -0.13 5.90 -51.93 -0.31 -0.43 16 32 H 0.03 0.96 6.73 -51.93 -0.35 0.61 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.80 5.93 -51.93 -0.31 0.49 16 36 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.13 2.41 7.85 -52.49 -0.41 2.00 16 38 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.12 1.83 7.95 -52.49 -0.42 1.42 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -30.53 341.37 -10.60 -41.14 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.40 Total: 2.66 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: -4.16 Total: -27.88 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.16 Total: -37.87 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.53 -10.60 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.330 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds