Wall clock time and date at job start Tue Mar 31 2020 06:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.46965 * 2 1 4 4 C 1.46904 * 111.00126 * 296.03292 * 3 2 1 5 5 C 1.50699 * 109.47077 * 295.31684 * 4 3 2 6 6 H 1.07996 * 120.00109 * 354.95979 * 5 4 3 7 7 C 1.37879 * 119.99872 * 174.95922 * 5 4 3 8 8 N 1.31513 * 119.99795 * 359.97438 * 7 5 4 9 9 Si 1.86789 * 120.00048 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47433 * 89.99899 * 9 7 5 11 11 H 1.48502 * 109.47399 * 210.00230 * 9 7 5 12 12 H 1.48499 * 109.47481 * 329.99852 * 9 7 5 13 13 C 1.46897 * 110.99955 * 59.98964 * 3 2 1 14 14 H 1.08994 * 109.47530 * 296.04465 * 13 3 2 15 15 C 1.53007 * 109.47301 * 176.04554 * 13 3 2 16 16 C 1.50698 * 109.47103 * 56.04875 * 13 3 2 17 17 C 1.39378 * 119.51029 * 39.99628 * 16 13 3 18 18 C 1.36090 * 120.99270 * 179.74102 * 17 16 13 19 19 C 1.40541 * 119.65450 * 359.97438 * 18 17 16 20 20 C 1.40535 * 121.29438 * 180.02562 * 19 18 17 21 21 C 1.36090 * 119.65982 * 179.97438 * 20 19 18 22 22 C 1.39376 * 120.98613 * 0.02562 * 21 20 19 23 23 C 1.36091 * 120.99114 * 0.02562 * 22 21 20 24 24 C 1.40542 * 119.65274 * 359.96589 * 23 22 21 25 25 C 1.36092 * 119.50468 * 219.72594 * 16 13 3 26 26 H 1.09005 * 109.46925 * 302.31576 * 1 2 3 27 27 H 1.08994 * 109.47404 * 62.31694 * 1 2 3 28 28 H 1.09001 * 109.46816 * 182.32172 * 1 2 3 29 29 H 1.09004 * 109.47311 * 239.99858 * 2 1 3 30 30 H 1.08997 * 109.47302 * 120.00114 * 2 1 3 31 31 H 1.08997 * 109.46698 * 55.31397 * 4 3 2 32 32 H 1.09002 * 109.46895 * 175.31380 * 4 3 2 33 33 H 0.97003 * 119.99803 * 179.97438 * 8 7 5 34 34 H 1.08991 * 109.47698 * 180.02562 * 15 13 3 35 35 H 1.09007 * 109.46767 * 300.00697 * 15 13 3 36 36 H 1.09000 * 109.46531 * 59.99546 * 15 13 3 37 37 H 1.08006 * 119.50205 * 359.72446 * 17 16 13 38 38 H 1.08002 * 120.17445 * 179.97438 * 18 17 16 39 39 H 1.08007 * 120.17184 * 359.96977 * 20 19 18 40 40 H 1.07996 * 119.50616 * 180.02562 * 21 20 19 41 41 H 1.08008 * 119.50475 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.17585 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.17299 * 0.25987 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6276 2.0820 -1.2323 5 6 2.3024 1.4327 -2.4130 6 1 3.0193 0.6403 -2.2567 7 6 2.0046 1.8504 -3.6928 8 7 1.1312 2.8151 -3.8831 9 14 2.8416 1.0462 -5.1563 10 1 2.0336 -0.1129 -5.6132 11 1 2.9622 2.0317 -6.2607 12 1 4.1944 0.5806 -4.7586 13 6 1.5484 2.1099 1.1875 14 1 0.4614 2.1855 1.1596 15 6 2.1570 3.5137 1.2031 16 6 1.9684 1.3666 2.4293 17 6 3.2336 0.7845 2.4861 18 6 3.6459 0.1109 3.5944 19 6 2.7859 -0.0009 4.7003 20 6 3.1764 -0.6881 5.8622 21 6 2.3171 -0.7756 6.9139 22 6 1.0520 -0.1934 6.8571 23 6 0.6392 0.4789 5.7482 24 6 1.4991 0.5903 4.6422 25 6 1.1089 1.2786 3.4808 26 1 -0.3633 0.5494 0.8685 27 1 -0.3634 0.4774 -0.9100 28 1 -0.3633 -1.0268 0.0416 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.5461 2.0233 -1.3545 32 1 1.9301 3.1273 -1.1704 33 1 0.9219 3.1092 -4.7835 34 1 1.8077 4.0514 2.0844 35 1 3.2441 3.4380 1.2310 36 1 1.8532 4.0512 0.3048 37 1 3.8965 0.8690 1.6376 38 1 4.6289 -0.3355 3.6239 39 1 4.1536 -1.1447 5.9203 40 1 2.6200 -1.3039 7.8058 41 1 0.3891 -0.2778 7.7056 42 1 -0.3441 0.9246 5.7183 43 1 0.1317 1.7348 3.4227 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:19 Heat of formation + Delta-G solvation = 42.772086 kcal Electronic energy + Delta-G solvation = -22034.933051 eV Core-core repulsion = 19044.543930 eV Total energy + Delta-G solvation = -2990.389121 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.37687 -38.21368 -35.82237 -32.94898 -32.50289 -31.62552 -29.80994 -29.22061 -27.94581 -26.28160 -23.78031 -23.23016 -22.70625 -21.79620 -21.43552 -18.93552 -17.12290 -16.67870 -16.35158 -15.82605 -15.01743 -14.81051 -14.66709 -14.23941 -14.03388 -13.62917 -13.36845 -13.27709 -12.93263 -12.73766 -12.27044 -12.07930 -11.85696 -11.77475 -11.58404 -11.35418 -11.10114 -10.94246 -10.83348 -10.70304 -10.67590 -10.61442 -10.16398 -9.96676 -9.84804 -9.65124 -9.15844 -8.41553 -8.30684 -7.75837 -7.17898 -6.01993 -4.02292 0.65290 1.14367 2.17848 3.12170 3.31714 3.38312 3.42325 4.24043 4.42856 4.64558 4.85606 4.87730 4.98837 5.08667 5.19252 5.27518 5.34093 5.46481 5.51215 5.68044 5.76984 5.81039 5.85386 5.88956 6.04070 6.07454 6.09210 6.18746 6.23225 6.34487 6.39254 6.45366 6.51017 6.53193 6.69870 6.72639 6.77812 6.90901 6.92527 6.97174 7.18434 7.36550 7.46187 7.82525 8.12254 8.22474 8.57561 9.05710 9.61498 11.08726 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.032290 B = 0.003764 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.922814 B = 7436.436340 C = 7605.099824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.060 3.940 3 N -0.526 5.526 4 C 0.185 3.815 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.110 3.890 14 H 0.043 0.957 15 C -0.139 4.139 16 C -0.048 4.048 17 C -0.078 4.078 18 C -0.122 4.122 19 C -0.055 4.055 20 C -0.105 4.105 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.106 4.106 24 C -0.049 4.049 25 C -0.118 4.118 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.000 1.000 32 H 0.033 0.967 33 H 0.260 0.740 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.137 0.863 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 -4.643 18.828 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.069 4.069 3 N -0.250 5.250 4 C 0.061 3.939 5 C -0.542 4.542 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.002 3.998 14 H 0.060 0.940 15 C -0.197 4.197 16 C -0.048 4.048 17 C -0.096 4.096 18 C -0.140 4.140 19 C -0.055 4.055 20 C -0.123 4.123 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.124 4.124 24 C -0.049 4.049 25 C -0.136 4.136 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.018 0.982 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.155 0.845 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.180 -4.532 18.682 19.260 hybrid contribution -0.629 -0.391 -0.913 1.176 sum 0.552 -4.923 17.769 18.446 Atomic orbital electron populations 1.22355 0.99536 1.00738 1.01844 1.21998 0.92089 0.91421 1.01374 1.62416 1.58650 1.01679 1.02293 1.19850 0.94828 0.94435 0.84812 1.21146 1.23696 1.19334 0.90052 0.91961 1.24965 0.95371 0.95286 0.98965 1.69955 1.33755 1.28478 1.21700 0.86544 0.79962 0.78978 0.82208 1.20834 1.21348 1.19807 1.20590 0.96959 0.93442 0.88849 0.93955 1.21854 1.01601 0.94762 1.01436 1.19753 0.93865 0.96161 0.95036 1.20940 0.95946 0.95048 0.97703 1.21023 0.99213 1.00672 0.93071 1.18101 0.93917 0.98699 0.94817 1.21007 0.99566 0.98834 0.92910 1.20758 0.94378 1.00680 0.98715 1.20760 0.96476 0.98928 0.98218 1.21009 0.99090 0.99288 0.92969 1.18029 0.93762 0.98511 0.94579 1.20854 0.99722 1.00275 0.92763 0.93778 0.91524 0.93638 0.90048 0.92815 0.98183 0.94906 0.93010 0.93389 0.92004 0.91218 0.84510 0.85879 0.85958 0.86484 0.86466 0.85958 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.42 9.24 37.16 0.34 -3.08 16 2 C 0.06 1.15 5.43 -3.83 -0.02 1.13 16 3 N -0.53 -10.79 3.88 -229.47 -0.89 -11.68 16 4 C 0.19 4.61 4.32 -4.97 -0.02 4.59 16 5 C -0.50 -13.73 8.34 -34.44 -0.29 -14.02 16 6 H 0.06 1.69 7.23 -52.49 -0.38 1.31 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.11 1.94 1.74 -68.86 -0.12 1.82 16 14 H 0.04 0.77 6.29 -51.93 -0.33 0.44 16 15 C -0.14 -2.34 8.96 37.16 0.33 -2.00 16 16 C -0.05 -0.75 3.74 -104.97 -0.39 -1.14 16 17 C -0.08 -1.19 7.95 -39.93 -0.32 -1.51 16 18 C -0.12 -1.64 9.77 -39.49 -0.39 -2.02 16 19 C -0.06 -0.75 5.74 -106.83 -0.61 -1.36 16 20 C -0.11 -1.19 9.77 -39.49 -0.39 -1.58 16 21 C -0.13 -1.30 9.95 -39.93 -0.40 -1.70 16 22 C -0.13 -1.31 9.95 -39.93 -0.40 -1.70 16 23 C -0.11 -1.23 9.77 -39.49 -0.39 -1.62 16 24 C -0.05 -0.67 5.74 -106.83 -0.61 -1.28 16 25 C -0.12 -1.69 9.36 -39.49 -0.37 -2.06 16 26 H 0.04 0.76 6.37 -51.93 -0.33 0.43 16 27 H 0.07 1.40 6.51 -51.93 -0.34 1.06 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.72 6.77 -51.93 -0.35 1.37 16 30 H 0.05 0.96 6.11 -51.93 -0.32 0.65 16 31 H 0.00 0.01 6.24 -51.93 -0.32 -0.31 16 32 H 0.03 0.87 5.88 -51.93 -0.31 0.56 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 36 H 0.07 1.28 6.22 -51.93 -0.32 0.96 16 37 H 0.14 2.19 7.67 -52.48 -0.40 1.79 16 38 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.12 1.57 8.00 -52.49 -0.42 1.15 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -29.14 339.54 -10.52 -39.66 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.34 Total: 2.10 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -4.13 Total: -26.09 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.15 Total: -37.20 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.14 -10.52 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.431 kcal (2) G-P(sol) polarization free energy of solvation -29.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds