Wall clock time and date at job start Tue Mar 31 2020 06:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46895 * 109.47401 * 2 1 4 4 C 1.46906 * 110.99938 * 288.00304 * 3 2 1 5 5 C 1.50696 * 109.47088 * 160.35995 * 4 3 2 6 6 H 1.08001 * 120.00704 * 4.65508 * 5 4 3 7 7 C 1.37878 * 120.00134 * 184.65348 * 5 4 3 8 8 N 1.31520 * 119.99613 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00482 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47033 * 90.00151 * 9 7 5 11 11 H 1.48497 * 109.47647 * 210.00097 * 9 7 5 12 12 H 1.48505 * 109.47240 * 330.00636 * 9 7 5 13 13 C 1.46896 * 111.00374 * 164.04440 * 3 2 1 14 14 C 1.52999 * 109.47141 * 293.95788 * 13 3 2 15 15 C 1.50703 * 109.47160 * 180.02562 * 14 13 3 16 16 C 1.39379 * 119.50247 * 270.28843 * 15 14 13 17 17 C 1.36091 * 120.98794 * 180.28053 * 16 15 14 18 18 C 1.40540 * 119.65253 * 359.70897 * 17 16 15 19 19 C 1.40537 * 121.27897 * 180.02562 * 18 17 16 20 20 C 1.36098 * 119.65431 * 180.02562 * 19 18 17 21 21 C 1.39380 * 120.98378 * 359.95382 * 20 19 18 22 22 C 1.36096 * 120.99193 * 0.02562 * 21 20 19 23 23 C 1.40538 * 119.65425 * 359.97438 * 22 21 20 24 24 C 1.36088 * 119.50908 * 89.99725 * 15 14 13 25 25 H 1.08997 * 109.47431 * 179.46408 * 1 2 3 26 26 H 1.08999 * 109.47643 * 299.46572 * 1 2 3 27 27 H 1.09006 * 109.47203 * 59.46575 * 1 2 3 28 28 H 1.09007 * 109.47184 * 239.99871 * 2 1 3 29 29 H 1.09004 * 109.47187 * 120.00143 * 2 1 3 30 30 H 1.09003 * 109.46437 * 280.35745 * 4 3 2 31 31 H 1.08997 * 109.47408 * 40.35424 * 4 3 2 32 32 H 0.97003 * 119.99813 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47088 * 173.95086 * 13 3 2 34 34 H 1.09003 * 109.46974 * 53.95480 * 13 3 2 35 35 H 1.08995 * 109.47214 * 59.99713 * 14 13 3 36 36 H 1.09003 * 109.46935 * 299.99715 * 14 13 3 37 37 H 1.08002 * 119.50653 * 359.97438 * 16 15 14 38 38 H 1.08001 * 120.17336 * 179.73405 * 17 16 15 39 39 H 1.07995 * 120.17998 * 0.02562 * 19 18 17 40 40 H 1.07997 * 119.51167 * 179.97438 * 20 19 18 41 41 H 1.07993 * 119.50573 * 180.02562 * 21 20 19 42 42 H 1.07999 * 120.17425 * 180.02562 * 22 21 20 43 43 H 1.08002 * 120.16999 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7955 2.0226 -1.3043 5 6 1.8469 3.5204 -1.1467 6 1 2.1021 3.9545 -0.1913 7 6 1.5682 4.3368 -2.2223 8 7 1.2569 3.8082 -3.3857 9 14 1.6311 6.1934 -2.0268 10 1 3.0016 6.6771 -2.3322 11 1 0.6643 6.8228 -2.9618 12 1 1.2778 6.5565 -0.6308 13 6 3.4383 1.4417 0.3770 14 6 3.5972 0.9994 1.8330 15 6 5.0525 1.0583 2.2199 16 6 5.8601 -0.0610 2.0261 17 6 7.1768 -0.0430 2.3699 18 6 7.7351 1.1220 2.9233 19 6 9.0906 1.1785 3.2900 20 6 9.5967 2.3237 3.8235 21 6 8.7904 3.4450 4.0119 22 6 7.4737 3.4270 3.6682 23 6 6.9154 2.2623 3.1143 24 6 5.5599 2.2055 2.7478 25 1 -0.3634 -1.0276 -0.0096 26 1 -0.3634 0.5055 0.8947 27 1 -0.3634 0.5221 -0.8852 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.5698 1.7039 -2.0023 31 1 0.8180 1.7309 -1.6882 32 1 1.0612 4.3826 -4.1425 33 1 3.8033 2.4627 0.2654 34 1 4.0128 0.7779 -0.2691 35 1 3.2322 -0.0215 1.9445 36 1 3.0227 1.6633 2.4791 37 1 5.4335 -0.9576 1.6013 38 1 7.7895 -0.9193 2.2179 39 1 9.7274 0.3177 3.1492 40 1 10.6385 2.3644 4.1049 41 1 9.2170 4.3414 4.4369 42 1 6.8612 4.3036 3.8195 43 1 4.9231 3.0664 2.8882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:00 Heat of formation + Delta-G solvation = 32.648319 kcal Electronic energy + Delta-G solvation = -21219.616174 eV Core-core repulsion = 18228.788054 eV Total energy + Delta-G solvation = -2990.828120 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36187 -37.61043 -36.38336 -33.11027 -32.60302 -31.91653 -30.05054 -29.44161 -28.08354 -25.96616 -23.50090 -23.05571 -22.57693 -21.91933 -21.19227 -19.52305 -17.32103 -16.89065 -16.46611 -15.94136 -14.92390 -14.75163 -14.66110 -14.32822 -13.93994 -13.78440 -13.57521 -13.41269 -13.29964 -12.83979 -12.35983 -12.22326 -12.01289 -11.87040 -11.39605 -11.27132 -11.18228 -10.92911 -10.85902 -10.76500 -10.67715 -10.62839 -10.31673 -10.10389 -9.92582 -9.57867 -9.18100 -8.46912 -8.37973 -7.83128 -7.21487 -5.99093 -3.99757 0.56115 1.02935 2.08806 3.00228 3.33712 3.39816 3.44111 4.13596 4.45022 4.57987 4.75502 4.82027 4.88909 5.06147 5.12038 5.26322 5.30160 5.36811 5.42430 5.49149 5.57249 5.71843 5.79625 5.80594 5.95548 5.96031 6.05433 6.09673 6.19880 6.24087 6.28081 6.37098 6.42789 6.46373 6.58508 6.60237 6.72382 6.82384 6.85402 6.86915 7.05263 7.29236 7.38239 7.85810 8.16513 8.25646 8.58908 9.07693 9.64014 11.11629 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.004102 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.154610 B = 6823.701748 C = 8241.459206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.537 5.537 4 C 0.191 3.809 5 C -0.502 4.502 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.072 3.928 14 C -0.082 4.082 15 C -0.065 4.065 16 C -0.105 4.105 17 C -0.112 4.112 18 C -0.058 4.058 19 C -0.107 4.107 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.103 4.103 23 C -0.047 4.047 24 C -0.104 4.104 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.020 0.980 29 H 0.059 0.941 30 H -0.013 1.013 31 H 0.037 0.963 32 H 0.260 0.740 33 H 0.081 0.919 34 H 0.019 0.981 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.490 -6.978 13.956 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 N -0.261 5.261 4 C 0.066 3.934 5 C -0.541 4.541 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.057 4.057 14 C -0.120 4.120 15 C -0.066 4.066 16 C -0.123 4.123 17 C -0.130 4.130 18 C -0.058 4.058 19 C -0.125 4.125 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.121 4.121 23 C -0.047 4.047 24 C -0.122 4.122 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.005 0.995 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.037 0.963 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.152 -6.663 14.109 19.777 hybrid contribution 0.538 0.577 -0.753 1.091 sum 12.690 -6.086 13.357 19.403 Atomic orbital electron populations 1.21743 0.95606 0.99840 1.02903 1.22046 0.95958 0.91141 0.98941 1.62161 1.15577 1.14078 1.34322 1.19778 0.96393 0.94232 0.82999 1.21171 1.45911 0.90706 0.96298 0.91967 1.24982 0.95549 0.98881 0.95244 1.69960 1.47862 1.35178 1.01039 0.86535 0.77703 0.85428 0.77987 1.20799 1.21297 1.19775 1.21908 0.89855 1.01492 0.92397 1.20786 0.90600 1.02265 0.98347 1.19738 0.96624 0.93349 0.96867 1.20822 0.93774 0.98354 0.99343 1.20958 0.95469 0.97032 0.99532 1.18085 0.93753 0.93956 1.00031 1.20994 0.94090 0.98329 0.99048 1.20795 0.99759 0.93455 1.00204 1.20811 0.94122 0.98438 1.00749 1.21081 0.95576 0.97168 0.98289 1.18115 0.93847 0.93648 0.99091 1.20988 0.93847 0.98164 0.99236 0.93761 0.92434 0.92049 0.96200 0.92259 0.99518 0.94521 0.93004 0.90023 0.96311 0.91366 0.90201 0.86077 0.85827 0.85911 0.86331 0.86237 0.85557 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.99 37.16 0.37 -2.08 16 2 C 0.05 0.86 5.55 -3.83 -0.02 0.84 16 3 N -0.54 -11.49 4.38 -236.07 -1.03 -12.52 16 4 C 0.19 4.99 4.59 -4.97 -0.02 4.97 16 5 C -0.50 -14.18 8.61 -34.44 -0.30 -14.48 16 6 H 0.06 1.74 7.66 -52.49 -0.40 1.34 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 9 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.07 1.37 4.77 -3.83 -0.02 1.36 16 14 C -0.08 -1.25 5.27 -27.88 -0.15 -1.40 16 15 C -0.07 -0.93 5.10 -104.97 -0.54 -1.47 16 16 C -0.10 -1.35 9.59 -39.93 -0.38 -1.74 16 17 C -0.11 -1.35 9.77 -39.49 -0.39 -1.73 16 18 C -0.06 -0.75 5.74 -106.83 -0.61 -1.36 16 19 C -0.11 -1.15 9.77 -39.48 -0.39 -1.54 16 20 C -0.12 -1.24 9.95 -39.93 -0.40 -1.64 16 21 C -0.12 -1.28 9.95 -39.93 -0.40 -1.68 16 22 C -0.10 -1.22 9.77 -39.48 -0.39 -1.61 16 23 C -0.05 -0.64 5.74 -106.83 -0.61 -1.25 16 24 C -0.10 -1.48 9.37 -39.49 -0.37 -1.85 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.06 1.19 6.52 -51.93 -0.34 0.85 16 28 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 29 H 0.06 0.92 5.94 -51.93 -0.31 0.62 16 30 H -0.01 -0.37 8.00 -51.93 -0.42 -0.78 16 31 H 0.04 1.02 6.24 -51.93 -0.32 0.69 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.08 1.74 7.32 -51.93 -0.38 1.36 16 34 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 35 H 0.07 0.95 6.22 -51.93 -0.32 0.63 16 36 H 0.08 1.23 8.07 -51.93 -0.42 0.82 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 42 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 350.64 15.07 5.28 5.28 Total: -1.00 -30.83 350.64 -11.42 -42.26 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.69 Total: -0.41 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -4.70 Total: -25.20 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: -0.30 Total: -38.74 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.83 -11.42 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.906 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds