Wall clock time and date at job start Tue Mar 31 2020 06:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47193 * 2 1 4 4 C 1.42907 * 114.00274 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46886 * 29.99960 * 4 3 2 6 6 C 1.52999 * 109.47112 * 270.00216 * 4 3 2 7 7 C 1.50699 * 109.47181 * 150.00137 * 4 3 2 8 8 N 1.29940 * 126.28721 * 45.02233 * 7 4 3 9 9 O 1.21307 * 110.25123 * 180.02562 * 8 7 4 10 10 C 1.33640 * 109.80828 * 0.02562 * 9 8 7 11 11 C 1.50706 * 126.55259 * 179.97438 * 10 9 8 12 12 N 1.46900 * 109.46833 * 270.02492 * 11 10 9 13 13 C 1.46906 * 111.00185 * 66.04462 * 12 11 10 14 14 C 1.53001 * 109.46962 * 62.06803 * 13 12 11 15 15 C 1.46903 * 110.99750 * 189.99499 * 12 11 10 16 16 C 1.50706 * 109.46987 * 168.96423 * 15 12 11 17 17 H 1.08002 * 119.99868 * 354.95854 * 16 15 12 18 18 C 1.37872 * 119.99971 * 174.95984 * 16 15 12 19 19 N 1.31521 * 119.99902 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00081 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47118 * 60.00108 * 20 18 16 22 22 H 1.48506 * 109.47393 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47304 * 299.99930 * 20 18 16 24 24 N 1.31132 * 106.90000 * 0.22675 * 10 9 8 25 25 H 1.08990 * 109.46942 * 300.00076 * 1 2 3 26 26 H 1.08994 * 109.46882 * 60.00063 * 1 2 3 27 27 H 1.09001 * 109.46705 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47458 * 239.99971 * 2 1 3 29 29 H 1.09007 * 109.47253 * 119.99937 * 2 1 3 30 30 H 1.08996 * 109.47330 * 180.02562 * 6 4 3 31 31 H 1.08999 * 109.47036 * 299.99651 * 6 4 3 32 32 H 1.08995 * 109.47124 * 59.99451 * 6 4 3 33 33 H 1.08993 * 109.47307 * 150.02127 * 11 10 9 34 34 H 1.08997 * 109.46834 * 30.02079 * 11 10 9 35 35 H 1.08995 * 109.47017 * 182.07365 * 13 12 11 36 36 H 1.09000 * 109.47046 * 302.07305 * 13 12 11 37 37 H 1.08997 * 109.47172 * 299.65014 * 14 13 12 38 38 H 1.09003 * 109.46858 * 59.64850 * 14 13 12 39 39 H 1.09004 * 109.46793 * 179.64724 * 14 13 12 40 40 H 1.08996 * 109.47123 * 288.96764 * 15 12 11 41 41 H 1.09001 * 109.46926 * 48.96677 * 15 12 11 42 42 H 0.96994 * 119.99870 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6016 -0.5129 6 6 3.9387 1.5006 1.4433 7 6 3.8348 2.7263 -0.7098 8 7 3.2987 3.8998 -0.5544 9 8 3.8483 4.7105 -1.2701 10 6 4.8162 4.1129 -1.9716 11 6 5.7330 4.7665 -2.9733 12 7 5.1256 4.6999 -4.3092 13 6 3.9029 5.5118 -4.3727 14 6 4.2506 6.9786 -4.1112 15 6 6.0841 5.1099 -5.3443 16 6 5.5282 4.7752 -6.7045 17 1 4.5983 4.2324 -6.7892 18 6 6.2066 5.1620 -7.8407 19 7 7.3387 5.8235 -7.7375 20 14 5.5180 4.7467 -9.5267 21 1 4.1776 5.3672 -9.6805 22 1 6.4287 5.2705 -10.5762 23 1 5.3998 3.2727 -9.6638 24 7 4.8121 2.8480 -1.6258 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.0253 1.5872 1.4438 31 1 3.5061 2.3592 1.9568 32 1 3.6466 0.5848 1.9571 33 1 6.6905 4.2460 -2.9832 34 1 5.8891 5.8092 -2.6967 35 1 3.4537 5.4154 -5.3611 36 1 3.1972 5.1655 -3.6176 37 1 4.6940 7.0758 -3.1203 38 1 4.9611 7.3231 -4.8626 39 1 3.3443 7.5819 -4.1646 40 1 6.2552 6.1841 -5.2759 41 1 7.0261 4.5817 -5.1968 42 1 7.8162 6.0953 -8.5368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081041010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:05 Heat of formation + Delta-G solvation = 25.268217 kcal Electronic energy + Delta-G solvation = -22588.546447 eV Core-core repulsion = 19186.549039 eV Total energy + Delta-G solvation = -3401.997408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.37095 -38.72950 -37.57393 -35.66897 -33.36796 -32.60713 -31.60674 -30.22219 -29.66691 -27.99483 -25.33345 -25.11307 -23.50350 -23.01395 -22.81686 -21.01458 -19.58055 -17.90834 -17.33450 -16.96784 -16.25247 -15.91666 -15.51592 -15.31842 -14.97733 -14.28769 -14.18859 -13.68654 -13.47664 -13.11416 -12.96473 -12.73793 -12.32931 -12.23872 -12.02401 -11.88609 -11.79106 -11.64760 -11.37373 -11.22481 -11.18482 -11.03077 -10.84803 -10.74196 -10.61722 -10.15463 -10.02070 -9.91670 -9.69904 -9.32407 -8.48017 -7.43764 -6.07898 -4.09093 1.35947 2.31148 3.04169 3.16064 3.32120 3.36193 3.39660 3.89544 4.27515 4.39776 4.65088 4.74355 4.86390 4.88068 4.98191 5.09394 5.19263 5.27850 5.29770 5.42412 5.48244 5.59820 5.64879 5.69146 5.72299 5.85149 5.88656 5.90006 5.96200 6.04851 6.20029 6.34718 6.59504 6.81003 6.88842 7.13097 7.29151 7.69093 7.91208 8.03233 8.38361 8.39914 8.97614 9.55153 11.02686 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.003573 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.286607 B = 7834.572463 C = 8398.898565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.184 3.816 5 H 0.093 0.907 6 C -0.167 4.167 7 C 0.160 3.840 8 N -0.367 5.367 9 O 0.075 5.925 10 C 0.211 3.789 11 C 0.135 3.865 12 N -0.527 5.527 13 C 0.056 3.944 14 C -0.189 4.189 15 C 0.191 3.809 16 C -0.507 4.507 17 H 0.063 0.937 18 C 0.058 3.942 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 N -0.469 5.469 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.011 0.989 41 H 0.031 0.969 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.190 -7.025 16.265 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.292 6.292 4 C 0.125 3.875 5 H 0.110 0.890 6 C -0.225 4.225 7 C -0.113 4.113 8 N -0.075 5.075 9 O 0.015 5.985 10 C -0.010 4.010 11 C 0.005 3.995 12 N -0.253 5.253 13 C -0.073 4.073 14 C -0.248 4.248 15 C 0.067 3.933 16 C -0.546 4.546 17 H 0.081 0.919 18 C -0.144 4.144 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.202 1.202 24 N -0.204 5.204 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.133 0.867 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.029 0.971 41 H 0.049 0.951 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.835 -7.571 16.605 19.860 hybrid contribution 0.129 0.516 -0.957 1.095 sum -7.706 -7.055 15.647 18.814 Atomic orbital electron populations 1.21734 0.93424 1.02284 1.03352 1.22590 0.95881 0.83208 1.00376 1.88002 1.19197 1.27007 1.95011 1.19896 0.82367 0.90688 0.94592 0.88965 1.22240 1.01980 1.03449 0.94845 1.25421 0.93426 0.95388 0.97111 1.74597 1.18105 1.01174 1.13580 1.85331 1.37150 1.35818 1.40202 1.29052 0.90272 0.87315 0.94325 1.20694 0.93333 0.98571 0.86879 1.62424 1.07732 1.54792 1.00340 1.22065 0.92535 0.90281 1.02395 1.22384 1.02202 0.98803 1.01399 1.19859 0.90184 0.95147 0.88119 1.21044 1.08228 1.35720 0.89615 0.91865 1.24949 0.94978 0.95140 0.99321 1.69933 1.15485 1.38902 1.29417 0.86552 0.78728 0.78840 0.83261 1.20256 1.21353 1.20151 1.71873 1.20325 1.15800 1.12363 0.91795 0.91694 0.90927 0.92889 0.93045 0.90902 0.91204 0.91074 0.86685 0.91281 0.89291 0.93375 0.93526 0.90839 0.92904 0.97102 0.95094 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.06 0.53 6.47 37.16 0.24 0.77 16 3 O -0.37 -4.98 9.97 -35.23 -0.35 -5.33 16 4 C 0.18 2.36 3.27 -27.88 -0.09 2.27 16 5 H 0.09 1.06 7.79 -51.93 -0.40 0.66 16 6 C -0.17 -1.68 9.51 37.16 0.35 -1.32 16 7 C 0.16 2.61 7.10 -156.38 -1.11 1.50 16 8 N -0.37 -6.35 12.16 30.90 0.38 -5.98 16 9 O 0.07 1.27 10.67 18.11 0.19 1.46 16 10 C 0.21 3.60 7.07 -13.05 -0.09 3.51 16 11 C 0.14 2.28 5.38 -4.97 -0.03 2.26 16 12 N -0.53 -10.79 4.69 -237.51 -1.11 -11.91 16 13 C 0.06 1.05 5.71 -3.82 -0.02 1.03 16 14 C -0.19 -3.21 9.26 37.16 0.34 -2.87 16 15 C 0.19 4.59 4.53 -4.97 -0.02 4.57 16 16 C -0.51 -13.63 8.40 -34.44 -0.29 -13.91 16 17 H 0.06 1.71 7.38 -52.49 -0.39 1.32 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -25.56 13.29 55.43 0.74 -24.82 16 20 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 N -0.47 -8.24 11.55 -9.87 -0.11 -8.36 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.05 0.38 7.87 -51.93 -0.41 -0.02 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 33 H 0.12 1.86 7.92 -51.93 -0.41 1.44 16 34 H 0.07 1.04 6.07 -51.93 -0.32 0.73 16 35 H 0.09 1.84 6.99 -51.93 -0.36 1.47 16 36 H 0.05 0.88 6.72 -51.93 -0.35 0.53 16 37 H 0.05 0.71 6.34 -51.93 -0.33 0.38 16 38 H 0.07 1.41 6.28 -51.93 -0.33 1.08 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.01 0.28 6.01 -51.93 -0.31 -0.03 16 41 H 0.03 0.79 7.91 -51.93 -0.41 0.38 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -30.33 345.99 -7.03 -37.36 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.52 Total: -2.21 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.43 Total: -1.58 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.11 Total: -51.06 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.16 Total: -3.87 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.33 -7.03 -37.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081041010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.630 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds