Wall clock time and date at job start Tue Mar 31 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42891 * 109.46984 * 2 1 4 4 C 1.42905 * 113.99781 * 179.97438 * 3 2 1 5 5 H 1.08991 * 109.47129 * 330.00458 * 4 3 2 6 6 C 1.53005 * 109.46804 * 90.00163 * 4 3 2 7 7 C 1.50699 * 109.47128 * 209.99637 * 4 3 2 8 8 N 1.29940 * 126.28994 * 315.02878 * 7 4 3 9 9 O 1.21300 * 110.25072 * 179.97438 * 8 7 4 10 10 C 1.33639 * 109.81370 * 0.02562 * 9 8 7 11 11 C 1.50698 * 126.55662 * 179.97438 * 10 9 8 12 12 N 1.46900 * 109.47010 * 270.02338 * 11 10 9 13 13 C 1.46909 * 111.00150 * 66.04500 * 12 11 10 14 14 C 1.53001 * 109.47089 * 61.25818 * 13 12 11 15 15 C 1.46905 * 111.00014 * 189.99366 * 12 11 10 16 16 C 1.50699 * 109.47055 * 164.69152 * 15 12 11 17 17 H 1.07999 * 120.00045 * 1.23502 * 16 15 12 18 18 C 1.37879 * 119.99989 * 181.23813 * 16 15 12 19 19 N 1.31512 * 119.99730 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 119.99794 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47002 * 90.00535 * 20 18 16 22 22 H 1.48500 * 109.46939 * 210.00061 * 20 18 16 23 23 H 1.48495 * 109.47564 * 330.00413 * 20 18 16 24 24 N 1.31128 * 106.89594 * 0.22503 * 10 9 8 25 25 H 1.09003 * 109.47180 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46778 * 299.99897 * 1 2 3 27 27 H 1.08999 * 109.46798 * 60.00121 * 1 2 3 28 28 H 1.09000 * 109.46905 * 239.99567 * 2 1 3 29 29 H 1.09008 * 109.46788 * 120.00165 * 2 1 3 30 30 H 1.09008 * 109.47053 * 299.99784 * 6 4 3 31 31 H 1.09002 * 109.47352 * 59.99862 * 6 4 3 32 32 H 1.09002 * 109.46931 * 180.02562 * 6 4 3 33 33 H 1.08999 * 109.47821 * 150.01906 * 11 10 9 34 34 H 1.09006 * 109.46777 * 30.01911 * 11 10 9 35 35 H 1.08993 * 109.47280 * 181.25758 * 13 12 11 36 36 H 1.09000 * 109.46788 * 301.26138 * 13 12 11 37 37 H 1.09007 * 109.47030 * 299.47368 * 14 13 12 38 38 H 1.08998 * 109.47296 * 59.47156 * 14 13 12 39 39 H 1.08997 * 109.47336 * 179.47913 * 14 13 12 40 40 H 1.09000 * 109.47263 * 284.69185 * 15 12 11 41 41 H 1.09002 * 109.46614 * 44.69687 * 15 12 11 42 42 H 0.97006 * 119.99938 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8632 0.6016 0.5146 6 6 3.9399 1.5001 -1.4418 7 6 3.8343 2.7264 0.7109 8 7 3.2978 3.8997 0.5554 9 8 3.8470 4.7106 1.2710 10 6 4.8157 4.1137 1.9718 11 6 5.7332 4.7679 2.9725 12 7 6.9349 5.2605 2.2861 13 6 6.6015 6.3469 1.3551 14 6 5.9977 7.5179 2.1331 15 6 7.9545 5.6899 3.2526 16 6 9.2824 5.8286 2.5537 17 1 9.3570 5.6380 1.4933 18 6 10.4021 6.1986 3.2681 19 7 11.5608 6.3201 2.6580 20 14 10.2729 6.5287 5.1021 21 1 10.5168 5.2692 5.8501 22 1 11.2851 7.5417 5.4951 23 1 8.9144 7.0375 5.4190 24 7 4.8191 2.8510 1.6184 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.6481 0.5841 -1.9556 31 1 3.5076 2.3585 -1.9559 32 1 5.0265 1.5857 -1.4414 33 1 6.0207 4.0406 3.7317 34 1 5.2174 5.6032 3.4464 35 1 7.5056 6.6778 0.8442 36 1 5.8800 5.9878 0.6212 37 1 5.0884 7.1893 2.6365 38 1 6.7156 7.8709 2.8734 39 1 5.7589 8.3276 1.4436 40 1 7.6674 6.6501 3.6811 41 1 8.0376 4.9478 4.0467 42 1 12.3486 6.5808 3.1605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081041012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:09 Heat of formation + Delta-G solvation = 30.453289 kcal Electronic energy + Delta-G solvation = -22573.940800 eV Core-core repulsion = 19172.168233 eV Total energy + Delta-G solvation = -3401.772567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.43262 -38.77352 -37.75931 -35.72697 -33.39997 -32.57138 -31.67847 -30.24050 -29.90117 -28.47806 -25.60732 -25.14229 -23.50247 -23.07344 -22.64629 -20.99112 -19.54251 -18.00362 -17.40922 -17.03630 -16.71053 -15.95934 -15.56851 -15.48225 -15.03609 -14.42382 -14.05919 -13.68395 -13.51698 -13.35524 -12.98454 -12.76767 -12.47708 -12.31776 -12.20119 -12.03689 -11.83530 -11.76081 -11.52064 -11.41604 -11.23984 -11.15477 -10.88461 -10.70532 -10.59632 -10.22513 -10.03588 -10.00121 -9.73965 -9.38880 -8.61226 -7.59709 -6.09218 -4.07227 1.29636 2.27288 2.98034 3.06362 3.25064 3.32049 3.33365 3.87203 4.21245 4.37009 4.62149 4.65203 4.69410 4.85607 4.93693 5.03335 5.17718 5.22616 5.25505 5.35224 5.43658 5.55487 5.56180 5.58027 5.62689 5.77308 5.80375 5.85243 5.90405 5.93301 6.13214 6.20796 6.36653 6.62891 6.78685 6.84128 6.91375 7.44431 7.67469 7.80472 8.32759 8.56704 8.99963 9.50858 11.03862 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030621 B = 0.003340 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.193129 B = 8382.203320 C = 8556.782743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.375 6.375 4 C 0.185 3.815 5 H 0.093 0.907 6 C -0.168 4.168 7 C 0.161 3.839 8 N -0.365 5.365 9 O 0.076 5.924 10 C 0.209 3.791 11 C 0.133 3.867 12 N -0.517 5.517 13 C 0.053 3.947 14 C -0.191 4.191 15 C 0.160 3.840 16 C -0.508 4.508 17 H 0.081 0.919 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.873 3.127 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.267 1.267 24 N -0.467 5.467 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.005 0.995 41 H 0.027 0.973 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.839 -8.807 -2.895 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.293 6.293 4 C 0.125 3.875 5 H 0.110 0.890 6 C -0.227 4.227 7 C -0.112 4.112 8 N -0.073 5.073 9 O 0.016 5.984 10 C -0.012 4.012 11 C 0.003 3.997 12 N -0.242 5.242 13 C -0.075 4.075 14 C -0.250 4.250 15 C 0.035 3.965 16 C -0.546 4.546 17 H 0.099 0.901 18 C -0.132 4.132 19 N -0.537 5.537 20 Si 0.700 3.300 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.192 1.192 24 N -0.201 5.201 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.134 0.866 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.022 0.978 41 H 0.045 0.955 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.105 -9.287 -3.692 21.561 hybrid contribution 0.035 0.721 1.506 1.670 sum -19.070 -8.567 -2.186 21.020 Atomic orbital electron populations 1.21738 0.93452 1.02278 1.03302 1.22587 0.95817 0.83252 1.00422 1.87990 1.19334 1.26968 1.95048 1.19909 0.82153 0.90573 0.94854 0.88960 1.22254 1.02374 1.03437 0.94610 1.25416 0.93049 0.95367 0.97371 1.74605 1.18865 1.00921 1.12882 1.85327 1.37432 1.35741 1.39929 1.28910 0.90142 0.87288 0.94867 1.20719 0.89397 0.99192 0.90368 1.62247 1.06215 1.35901 1.19804 1.22122 1.00907 0.89448 0.94997 1.22408 1.00777 0.99902 1.01881 1.20306 0.90755 0.94313 0.91109 1.20935 0.89974 1.46019 0.97714 0.90084 1.24873 0.95199 0.95096 0.98047 1.69885 0.99541 1.48055 1.36203 0.86898 0.78207 0.78544 0.86315 1.20076 1.21190 1.19170 1.71865 1.18620 1.16501 1.13111 0.90926 0.91831 0.91729 0.92923 0.93007 0.91058 0.91163 0.90575 0.86635 0.91216 0.88792 0.92887 0.93351 0.91311 0.92459 0.97794 0.95454 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.48 6.47 37.16 0.24 0.72 16 3 O -0.37 -4.72 9.97 -35.23 -0.35 -5.07 16 4 C 0.18 2.33 3.27 -27.88 -0.09 2.24 16 5 H 0.09 1.02 7.79 -51.93 -0.40 0.62 16 6 C -0.17 -1.84 9.51 37.16 0.35 -1.48 16 7 C 0.16 2.58 7.10 -156.37 -1.11 1.47 16 8 N -0.37 -6.19 12.16 30.89 0.38 -5.81 16 9 O 0.08 1.24 10.69 18.11 0.19 1.44 16 10 C 0.21 3.44 7.07 -13.06 -0.09 3.35 16 11 C 0.13 2.12 5.36 -4.98 -0.03 2.09 16 12 N -0.52 -10.11 4.65 -237.51 -1.11 -11.21 16 13 C 0.05 0.96 5.74 -3.82 -0.02 0.94 16 14 C -0.19 -2.98 9.27 37.16 0.34 -2.64 16 15 C 0.16 3.57 3.66 -4.97 -0.02 3.55 16 16 C -0.51 -13.76 9.12 -34.44 -0.31 -14.08 16 17 H 0.08 2.43 7.68 -52.49 -0.40 2.03 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 20 Si 0.87 20.46 27.44 -169.99 -4.66 15.80 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.27 -5.89 6.58 56.52 0.37 -5.52 16 24 N -0.47 -8.01 11.55 -9.88 -0.11 -8.13 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.37 7.87 -51.93 -0.41 -0.03 16 29 H 0.05 0.41 8.09 -51.92 -0.42 -0.01 16 30 H 0.07 0.60 7.87 -51.92 -0.41 0.19 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.12 1.72 7.87 -51.93 -0.41 1.31 16 34 H 0.07 0.96 6.05 -51.93 -0.31 0.64 16 35 H 0.09 1.91 7.15 -51.93 -0.37 1.53 16 36 H 0.05 0.91 6.76 -51.93 -0.35 0.56 16 37 H 0.05 0.67 6.33 -51.93 -0.33 0.34 16 38 H 0.07 1.18 6.22 -51.93 -0.32 0.85 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.00 0.10 5.02 -51.93 -0.26 -0.16 16 41 H 0.03 0.60 7.18 -51.93 -0.37 0.23 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -31.24 342.58 -6.66 -37.90 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.48 Total: -1.33 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.45 Total: -2.71 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.07 Total: -51.19 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: -0.16 Total: -3.63 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.66 Total: 15.80 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.24 -6.66 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081041012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.352 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds