Wall clock time and date at job start Tue Mar 31 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 111.00211 * 2 1 4 4 C 1.50702 * 109.47022 * 66.05038 * 3 2 1 5 5 H 1.08004 * 119.99900 * 359.97438 * 4 3 2 6 6 C 1.37869 * 120.00475 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00457 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 119.99905 * 0.02562 * 6 4 3 9 9 H 1.48505 * 109.47109 * 89.99554 * 8 6 4 10 10 H 1.48494 * 109.47477 * 209.99634 * 8 6 4 11 11 H 1.48499 * 109.47020 * 330.00253 * 8 6 4 12 12 C 1.46907 * 110.99503 * 236.04857 * 2 1 3 13 13 C 1.53001 * 109.47209 * 293.95590 * 12 2 1 14 14 C 1.52996 * 109.46796 * 180.02562 * 13 12 2 15 15 C 1.50704 * 109.47023 * 180.02562 * 14 13 12 16 16 C 1.36130 * 120.17091 * 265.00123 * 15 14 13 17 17 C 1.39333 * 120.98770 * 180.23690 * 16 15 14 18 18 C 1.36122 * 120.98705 * 359.43812 * 17 16 15 19 19 C 1.40503 * 119.65379 * 0.57947 * 18 17 16 20 20 C 1.40551 * 121.28531 * 179.74037 * 19 18 17 21 21 C 1.36089 * 119.65002 * 179.97438 * 20 19 18 22 22 C 1.39379 * 120.99662 * 0.02562 * 21 20 19 23 23 C 1.36088 * 120.99109 * 359.95651 * 22 21 20 24 24 C 1.40500 * 120.17476 * 84.97208 * 15 14 13 25 25 H 1.08996 * 109.47082 * 183.95101 * 1 2 3 26 26 H 1.09008 * 109.46551 * 303.95226 * 1 2 3 27 27 H 1.08999 * 109.46870 * 63.94759 * 1 2 3 28 28 H 1.09002 * 109.47451 * 186.04294 * 3 2 1 29 29 H 1.08990 * 109.47797 * 306.05034 * 3 2 1 30 30 H 0.97005 * 120.00453 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46555 * 173.95361 * 12 2 1 32 32 H 1.09003 * 109.46977 * 53.95788 * 12 2 1 33 33 H 1.08996 * 109.46863 * 59.99778 * 13 12 2 34 34 H 1.08996 * 109.46951 * 300.00154 * 13 12 2 35 35 H 1.08996 * 109.47867 * 60.00061 * 14 13 12 36 36 H 1.09003 * 109.46912 * 299.99905 * 14 13 12 37 37 H 1.08002 * 119.50229 * 359.94895 * 16 15 14 38 38 H 1.08000 * 119.50342 * 179.71952 * 17 16 15 39 39 H 1.08003 * 120.17549 * 180.28394 * 18 17 16 40 40 H 1.07997 * 120.17348 * 359.92136 * 20 19 18 41 41 H 1.08001 * 119.50325 * 179.97438 * 21 20 19 42 42 H 1.07993 * 119.50671 * 179.97438 * 22 21 20 43 43 H 1.08006 * 120.17518 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 1 1.0741 1.5113 2.0486 6 6 2.0278 3.3489 1.5291 7 7 1.7146 3.9387 2.6620 8 14 3.0010 4.2757 0.2316 9 1 2.0643 4.9804 -0.6803 10 1 3.8881 5.2666 0.8920 11 1 3.8239 3.3170 -0.5487 12 6 1.9954 -0.7660 -1.1377 13 6 1.6313 -2.2426 -0.9705 14 6 2.1801 -3.0404 -2.1551 15 6 1.8209 -4.4947 -1.9908 16 6 2.7054 -5.3575 -1.4195 17 6 2.3930 -6.7064 -1.2637 18 6 1.1899 -7.1984 -1.6679 19 6 0.2515 -6.3383 -2.2626 20 6 -0.9988 -6.8107 -2.6974 21 6 -1.8829 -5.9481 -3.2686 22 6 -1.5680 -4.6000 -3.4305 23 6 -0.3674 -4.1069 -3.0212 24 6 0.5713 -4.9671 -2.4260 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3633 0.5740 0.8525 27 1 -0.3633 0.4513 -0.9232 28 1 3.0798 1.3443 -0.1082 29 1 1.5612 1.9274 -0.8308 30 1 1.9892 4.8548 2.8241 31 1 3.0796 -0.6611 -1.1757 32 1 1.5610 -0.3871 -2.0629 33 1 0.5471 -2.3474 -0.9324 34 1 2.0656 -2.6214 -0.0454 35 1 3.2643 -2.9356 -2.1928 36 1 1.7460 -2.6616 -3.0805 37 1 3.6654 -4.9919 -1.0862 38 1 3.1145 -7.3707 -0.8113 39 1 0.9597 -8.2454 -1.5367 40 1 -1.2561 -7.8529 -2.5797 41 1 -2.8428 -6.3137 -3.6023 42 1 -2.2875 -3.9368 -3.8872 43 1 -0.1373 -3.0599 -3.1527 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:21 Heat of formation + Delta-G solvation = 35.344384 kcal Electronic energy + Delta-G solvation = -21124.695348 eV Core-core repulsion = 18133.984138 eV Total energy + Delta-G solvation = -2990.711210 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.62801 -37.32555 -36.61835 -34.62972 -32.56784 -31.38398 -30.41153 -29.40431 -27.75290 -26.32702 -24.28638 -23.32498 -23.09106 -21.45126 -20.38897 -19.97036 -17.64810 -17.09290 -16.80415 -16.34054 -15.23201 -14.79998 -14.65730 -14.48343 -14.14893 -13.90959 -13.73391 -13.51189 -13.33338 -12.91511 -12.72551 -12.43580 -12.15278 -11.95603 -11.75258 -11.50903 -11.35426 -11.18361 -11.05323 -10.92511 -10.77072 -10.62321 -10.37298 -10.05653 -9.89521 -9.72926 -9.25727 -8.73131 -8.56657 -7.93531 -7.35345 -6.03929 -4.01054 0.41121 0.89717 1.93002 2.87775 3.28570 3.36227 3.38358 3.98171 4.41205 4.42924 4.63762 4.68606 4.76445 4.85429 4.93768 5.03049 5.12091 5.24594 5.28040 5.30204 5.34292 5.45434 5.57537 5.67340 5.73761 5.85625 5.89908 5.98725 6.03615 6.12004 6.12990 6.15541 6.25261 6.32043 6.40728 6.42390 6.53224 6.59725 6.72303 6.74560 6.87287 6.90005 7.02065 7.62149 7.93448 8.08553 8.68222 9.04883 9.57928 11.09304 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.003108 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.422912 B = 9005.657474 C = 9445.118022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.532 5.532 3 C 0.161 3.839 4 C -0.508 4.508 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.053 3.947 13 C -0.108 4.108 14 C -0.084 4.084 15 C -0.057 4.057 16 C -0.120 4.120 17 C -0.109 4.109 18 C -0.119 4.119 19 C -0.050 4.050 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.100 4.100 24 C -0.048 4.048 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.010 0.990 28 H 0.028 0.972 29 H -0.017 1.017 30 H 0.263 0.737 31 H 0.067 0.933 32 H 0.021 0.979 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 -22.310 -13.551 26.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.256 5.256 3 C 0.035 3.965 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.076 4.076 13 C -0.146 4.146 14 C -0.122 4.122 15 C -0.057 4.057 16 C -0.138 4.138 17 C -0.127 4.127 18 C -0.137 4.137 19 C -0.050 4.050 20 C -0.129 4.129 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.118 4.118 24 C -0.048 4.048 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.028 0.972 28 H 0.046 0.954 29 H 0.000 1.000 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.490 -22.348 -13.012 25.980 hybrid contribution 0.212 1.002 -1.316 1.668 sum -2.279 -21.346 -14.328 25.810 Atomic orbital electron populations 1.22283 0.88439 0.99959 1.00676 1.61930 1.07340 1.16296 1.39991 1.20191 0.95156 0.84210 0.96944 1.21057 1.35433 0.97217 1.00968 0.90132 1.24904 0.95797 0.97366 0.95333 1.69895 1.46971 1.13235 1.23945 0.86855 0.80638 0.80033 0.82169 1.20386 1.21143 1.19199 1.22111 0.99942 0.93124 0.92388 1.21584 1.01153 0.94368 0.97512 1.20668 1.01738 0.90166 0.99612 1.19805 0.92888 0.95989 0.96995 1.20781 0.99949 0.93233 0.99837 1.20841 0.96864 0.95552 0.99434 1.20961 0.93866 0.99161 0.99710 1.18088 0.94785 0.92963 0.99170 1.20995 0.93110 0.99683 0.99140 1.20848 0.99496 0.93701 0.99402 1.20867 0.97119 0.95597 1.00456 1.21163 0.93491 0.99652 0.97461 1.17973 0.94450 0.92859 0.99511 0.93204 0.90284 0.97191 0.95445 0.99966 0.92683 0.91474 0.96090 0.91837 0.90949 0.90613 0.90971 0.85816 0.86059 0.85861 0.85808 0.86165 0.86030 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.14 60.07 0.55 1.23 16 2 N -0.53 -11.33 4.75 -244.37 -1.16 -12.49 16 3 C 0.16 3.99 3.79 -4.98 -0.02 3.97 16 4 C -0.51 -14.66 9.01 -34.44 -0.31 -14.97 16 5 H 0.08 2.53 7.37 -52.48 -0.39 2.14 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 8 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 12 C 0.05 0.90 4.96 -3.82 -0.02 0.88 16 13 C -0.11 -1.52 5.12 -26.73 -0.14 -1.66 16 14 C -0.08 -0.97 4.74 -27.88 -0.13 -1.10 16 15 C -0.06 -0.67 5.14 -104.53 -0.54 -1.21 16 16 C -0.12 -1.30 9.57 -39.93 -0.38 -1.69 16 17 C -0.11 -1.07 9.95 -39.93 -0.40 -1.46 16 18 C -0.12 -1.18 9.77 -39.49 -0.39 -1.57 16 19 C -0.05 -0.57 5.74 -106.83 -0.61 -1.18 16 20 C -0.11 -1.07 9.77 -39.48 -0.39 -1.46 16 21 C -0.12 -1.07 9.95 -39.93 -0.40 -1.47 16 22 C -0.12 -1.22 9.95 -39.93 -0.40 -1.62 16 23 C -0.10 -1.12 9.19 -39.48 -0.36 -1.49 16 24 C -0.05 -0.58 5.74 -106.84 -0.61 -1.20 16 25 H 0.05 0.85 6.47 -51.93 -0.34 0.51 16 26 H 0.08 1.73 6.76 -51.92 -0.35 1.38 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.03 0.68 6.99 -51.93 -0.36 0.32 16 29 H -0.02 -0.43 7.55 -51.93 -0.39 -0.82 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 32 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.06 0.91 6.46 -51.93 -0.34 0.58 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 36 H 0.07 0.78 6.70 -51.93 -0.35 0.43 16 37 H 0.12 1.17 8.05 -52.49 -0.42 0.75 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.13 1.37 6.48 -52.48 -0.34 1.03 16 LS Contribution 345.74 15.07 5.21 5.21 Total: -1.00 -31.89 345.74 -11.14 -43.03 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.65 Total: -1.56 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -4.64 Total: -24.12 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: -0.39 Total: -39.58 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.89 -11.14 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.374 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds