Wall clock time and date at job start Tue Mar 31 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 117.00582 * 2 1 4 4 O 1.20824 * 119.99427 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00421 * 179.72716 * 3 2 1 6 6 C 1.52994 * 109.47172 * 174.19475 * 5 3 2 7 7 C 1.52998 * 109.47219 * 303.20100 * 6 5 3 8 8 N 1.46502 * 109.47164 * 305.32632 * 7 6 5 9 9 C 1.34776 * 119.99962 * 174.88200 * 8 7 6 10 10 O 1.21694 * 120.00084 * 0.02562 * 9 8 7 11 11 C 1.46371 * 119.99819 * 180.02562 * 9 8 7 12 12 H 1.07997 * 120.00420 * 359.97438 * 11 9 8 13 13 C 1.40054 * 119.99774 * 179.97438 * 11 9 8 14 14 N 1.30669 * 120.00107 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00047 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47031 * 59.99938 * 15 13 11 17 17 H 1.48495 * 109.47347 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46980 * 300.00039 * 15 13 11 19 19 C 1.53002 * 109.46950 * 183.20229 * 6 5 3 20 20 C 1.52996 * 109.47170 * 299.99603 * 19 6 5 21 21 C 1.52993 * 109.47548 * 300.00255 * 20 19 6 22 22 C 1.53002 * 109.47093 * 59.99697 * 21 20 19 23 23 C 1.52998 * 109.47053 * 300.00165 * 22 21 20 24 24 H 1.08997 * 109.46795 * 59.99984 * 1 2 3 25 25 H 1.08998 * 109.47073 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46987 * 300.00360 * 1 2 3 27 27 H 1.09003 * 109.46951 * 294.19861 * 5 3 2 28 28 H 1.09001 * 109.47292 * 54.19174 * 5 3 2 29 29 H 1.09008 * 109.47077 * 65.32975 * 7 6 5 30 30 H 1.09002 * 109.47116 * 185.32399 * 7 6 5 31 31 H 0.96997 * 119.99747 * 354.88436 * 8 7 6 32 32 H 0.97002 * 120.00238 * 180.02562 * 14 13 11 33 33 H 1.08994 * 109.47437 * 60.00249 * 19 6 5 34 34 H 1.09004 * 109.46785 * 179.97438 * 19 6 5 35 35 H 1.09002 * 109.47007 * 179.97438 * 20 19 6 36 36 H 1.09004 * 109.47089 * 60.00403 * 20 19 6 37 37 H 1.09004 * 109.47046 * 300.00175 * 21 20 19 38 38 H 1.09006 * 109.47303 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.47207 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.46785 * 60.00317 * 22 21 20 41 41 H 1.08991 * 109.47297 * 299.99367 * 23 22 21 42 42 H 1.09004 * 109.46739 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 0.0062 6 6 4.0012 2.7342 -0.1410 7 6 3.4004 3.3188 -1.4209 8 7 3.7669 2.4758 -2.5617 9 6 3.2624 2.7388 -3.7835 10 8 2.5029 3.6768 -3.9392 11 6 3.6281 1.8963 -4.9231 12 1 4.3025 1.0641 -4.7851 13 6 3.1034 2.1693 -6.1927 14 7 2.2879 3.1764 -6.3598 15 14 3.5706 1.0944 -7.6473 16 1 3.1556 -0.3063 -7.3812 17 1 2.8871 1.5902 -8.8688 18 1 5.0411 1.1454 -7.8483 19 6 5.5278 2.8065 -0.2149 20 6 6.1286 2.2220 1.0650 21 6 5.6379 3.0246 2.2716 22 6 4.1114 2.9523 2.3455 23 6 3.5105 3.5368 1.0656 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.9473 0.8751 0.9461 28 1 3.9642 0.6916 -0.8243 29 1 2.3148 3.3545 -1.3293 30 1 3.7853 4.3268 -1.5755 31 1 4.3725 1.7284 -2.4376 32 1 1.9242 3.3653 -7.2390 33 1 5.8774 2.2348 -1.0745 34 1 5.8375 3.8463 -0.3203 35 1 7.2161 2.2732 1.0121 36 1 5.8188 1.1822 1.1699 37 1 5.9477 4.0644 2.1667 38 1 6.0656 2.6078 3.1835 39 1 3.7617 3.5244 3.2048 40 1 3.8016 1.9125 2.4504 41 1 3.8203 4.5766 0.9607 42 1 2.4230 3.4849 1.1181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083392813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:37 Heat of formation + Delta-G solvation = -144.499774 kcal Electronic energy + Delta-G solvation = -23864.427510 eV Core-core repulsion = 20422.775658 eV Total energy + Delta-G solvation = -3441.651852 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -40.86956 -38.99028 -36.91942 -36.17410 -33.79373 -32.38656 -31.15153 -30.61654 -29.02625 -26.85428 -26.55116 -24.57121 -22.60007 -21.37774 -20.90117 -19.47322 -18.40444 -17.39580 -17.32296 -16.35170 -15.99958 -15.44613 -15.06528 -14.61758 -14.38902 -14.22252 -13.83800 -13.72174 -13.28599 -13.02883 -12.70960 -12.49891 -12.28995 -12.03033 -11.94080 -11.82920 -11.37211 -11.19486 -11.13256 -11.06188 -10.97269 -10.79771 -10.48737 -10.40708 -10.33420 -10.24244 -10.12358 -9.85239 -9.45848 -8.79092 -7.52721 -7.35016 -6.12306 -4.58051 2.49863 2.94396 3.18208 3.22887 3.24788 4.14531 4.58992 4.66761 4.71759 4.79444 4.94423 5.04427 5.17615 5.21891 5.25221 5.32341 5.34544 5.45203 5.50195 5.58759 5.63266 5.67474 5.74435 5.82172 5.88865 5.95067 6.07552 6.12616 6.23339 6.26219 6.34096 6.45267 6.53502 6.63869 6.72105 7.00010 7.47847 7.99153 8.05723 8.19178 8.38982 9.07914 9.62417 10.67370 10.87445 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.005313 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.069415 B = 5268.534915 C = 6055.783427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.463 3.537 4 O -0.491 6.491 5 C -0.105 4.105 6 C -0.051 4.051 7 C 0.129 3.871 8 N -0.767 5.767 9 C 0.555 3.445 10 O -0.579 6.579 11 C -0.548 4.548 12 H 0.065 0.935 13 C 0.088 3.912 14 N -0.769 5.769 15 Si 0.906 3.094 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.268 1.268 19 C -0.108 4.108 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.120 4.120 24 H 0.065 0.935 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.375 0.625 32 H 0.268 0.732 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.373 -6.146 16.577 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.282 6.282 3 C 0.307 3.693 4 O -0.378 6.378 5 C -0.143 4.143 6 C -0.051 4.051 7 C 0.004 3.996 8 N -0.424 5.424 9 C 0.359 3.641 10 O -0.462 6.462 11 C -0.585 4.585 12 H 0.083 0.917 13 C -0.131 4.131 14 N -0.398 5.398 15 Si 0.731 3.269 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.145 4.145 20 C -0.160 4.160 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.158 4.158 24 H 0.084 0.916 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.442 -5.015 16.328 17.424 hybrid contribution 0.354 -0.866 -0.740 1.193 sum 3.795 -5.881 15.588 17.088 Atomic orbital electron populations 1.23202 0.76724 1.03249 1.02570 1.86479 1.23224 1.34008 1.84452 1.23722 0.92191 0.81176 0.72253 1.90578 1.67228 1.35710 1.44290 1.21582 0.87678 0.99794 1.05213 1.20622 0.95431 0.92417 0.96655 1.21241 1.00816 0.93793 0.83763 1.46195 1.53395 1.34193 1.08606 1.18174 0.80083 0.84904 0.80970 1.90605 1.38820 1.32738 1.84033 1.20850 1.30506 1.14904 0.92218 0.91651 1.25693 0.93377 0.94518 0.99550 1.70018 1.22895 1.23761 1.23098 0.86474 0.79316 0.80698 0.80457 1.19351 1.20612 1.19326 1.21593 0.93402 1.02055 0.97472 1.21609 0.99918 0.99561 0.94883 1.21548 0.95814 1.00548 0.97735 1.21591 0.95394 1.00853 0.97924 1.21781 1.02517 0.99027 0.92449 0.91616 0.88510 0.92280 0.87672 0.87705 0.90394 0.93873 0.79332 0.92157 0.91237 0.91248 0.92069 0.91918 0.92012 0.92515 0.92246 0.92381 0.91751 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.36 -5.46 10.56 -39.26 -0.41 -5.87 16 3 C 0.46 7.47 7.37 36.00 0.27 7.73 16 4 O -0.49 -9.18 11.16 -18.75 -0.21 -9.39 16 5 C -0.11 -1.41 3.89 -27.89 -0.11 -1.52 16 6 C -0.05 -0.73 0.27 -154.51 -0.04 -0.77 16 7 C 0.13 2.60 4.14 -4.04 -0.02 2.59 16 8 N -0.77 -17.34 4.97 -61.72 -0.31 -17.65 16 9 C 0.56 16.19 7.75 -12.99 -0.10 16.09 16 10 O -0.58 -19.48 15.02 5.19 0.08 -19.40 16 11 C -0.55 -15.72 9.54 -35.63 -0.34 -16.06 16 12 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 13 C 0.09 2.51 5.50 -17.37 -0.10 2.41 16 14 N -0.77 -23.62 11.83 55.55 0.66 -22.97 16 15 Si 0.91 20.45 29.56 -169.99 -5.02 15.42 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 C -0.11 -1.34 4.61 -26.73 -0.12 -1.47 16 20 C -0.12 -1.20 5.65 -26.74 -0.15 -1.35 16 21 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 22 C -0.12 -1.26 5.65 -26.73 -0.15 -1.41 16 23 C -0.12 -1.60 4.48 -26.73 -0.12 -1.72 16 24 H 0.07 0.93 8.13 -51.93 -0.42 0.50 16 25 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.11 1.12 4.82 -51.93 -0.25 0.87 16 28 H 0.10 1.40 6.76 -51.93 -0.35 1.05 16 29 H 0.08 1.83 5.62 -51.92 -0.29 1.54 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.37 7.32 6.19 -40.82 -0.25 7.07 16 32 H 0.27 7.48 8.29 -40.82 -0.34 7.14 16 33 H 0.07 0.90 7.10 -51.93 -0.37 0.53 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.57 6.50 -51.93 -0.34 0.23 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.59 6.36 -51.93 -0.33 0.26 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 1.35 5.58 -51.93 -0.29 1.06 16 LS Contribution 326.20 15.07 4.92 4.92 Total: -1.00 -36.14 326.20 -6.62 -42.76 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.24 Total: 7.41 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -0.07 Total: 4.77 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.35 Total: -40.61 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.55 Total: -34.67 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.14 -6.62 -42.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083392813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.738 kcal (2) G-P(sol) polarization free energy of solvation -36.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds