Wall clock time and date at job start Tue Mar 31 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 117.00582 * 2 1 4 4 O 1.20824 * 119.99427 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00421 * 179.72716 * 3 2 1 6 6 C 1.52994 * 109.47172 * 174.19475 * 5 3 2 7 7 C 1.52998 * 109.47219 * 303.20100 * 6 5 3 8 8 N 1.46502 * 109.47164 * 305.32632 * 7 6 5 9 9 C 1.34776 * 119.99962 * 174.88200 * 8 7 6 10 10 O 1.21694 * 120.00084 * 0.02562 * 9 8 7 11 11 C 1.46371 * 119.99819 * 180.02562 * 9 8 7 12 12 H 1.07997 * 120.00420 * 359.97438 * 11 9 8 13 13 C 1.40054 * 119.99774 * 179.97438 * 11 9 8 14 14 N 1.30669 * 120.00107 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00047 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47031 * 59.99938 * 15 13 11 17 17 H 1.48495 * 109.47347 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46980 * 300.00039 * 15 13 11 19 19 C 1.53002 * 109.46950 * 183.20229 * 6 5 3 20 20 C 1.52996 * 109.47170 * 299.99603 * 19 6 5 21 21 C 1.52993 * 109.47548 * 300.00255 * 20 19 6 22 22 C 1.53002 * 109.47093 * 59.99697 * 21 20 19 23 23 C 1.52998 * 109.47053 * 300.00165 * 22 21 20 24 24 H 1.08997 * 109.46795 * 59.99984 * 1 2 3 25 25 H 1.08998 * 109.47073 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46987 * 300.00360 * 1 2 3 27 27 H 1.09003 * 109.46951 * 294.19861 * 5 3 2 28 28 H 1.09001 * 109.47292 * 54.19174 * 5 3 2 29 29 H 1.09008 * 109.47077 * 65.32975 * 7 6 5 30 30 H 1.09002 * 109.47116 * 185.32399 * 7 6 5 31 31 H 0.96997 * 119.99747 * 354.88436 * 8 7 6 32 32 H 0.97002 * 120.00238 * 180.02562 * 14 13 11 33 33 H 1.08994 * 109.47437 * 60.00249 * 19 6 5 34 34 H 1.09004 * 109.46785 * 179.97438 * 19 6 5 35 35 H 1.09002 * 109.47007 * 179.97438 * 20 19 6 36 36 H 1.09004 * 109.47089 * 60.00403 * 20 19 6 37 37 H 1.09004 * 109.47046 * 300.00175 * 21 20 19 38 38 H 1.09006 * 109.47303 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.47207 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.46785 * 60.00317 * 22 21 20 41 41 H 1.08991 * 109.47297 * 299.99367 * 23 22 21 42 42 H 1.09004 * 109.46739 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 0.0062 6 6 4.0012 2.7342 -0.1410 7 6 3.4004 3.3188 -1.4209 8 7 3.7669 2.4758 -2.5617 9 6 3.2624 2.7388 -3.7835 10 8 2.5029 3.6768 -3.9392 11 6 3.6281 1.8963 -4.9231 12 1 4.3025 1.0641 -4.7851 13 6 3.1034 2.1693 -6.1927 14 7 2.2879 3.1764 -6.3598 15 14 3.5706 1.0944 -7.6473 16 1 3.1556 -0.3063 -7.3812 17 1 2.8871 1.5902 -8.8688 18 1 5.0411 1.1454 -7.8483 19 6 5.5278 2.8065 -0.2149 20 6 6.1286 2.2220 1.0650 21 6 5.6379 3.0246 2.2716 22 6 4.1114 2.9523 2.3455 23 6 3.5105 3.5368 1.0656 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.9473 0.8751 0.9461 28 1 3.9642 0.6916 -0.8243 29 1 2.3148 3.3545 -1.3293 30 1 3.7853 4.3268 -1.5755 31 1 4.3725 1.7284 -2.4376 32 1 1.9242 3.3653 -7.2390 33 1 5.8774 2.2348 -1.0745 34 1 5.8375 3.8463 -0.3203 35 1 7.2161 2.2732 1.0121 36 1 5.8188 1.1822 1.1699 37 1 5.9477 4.0644 2.1667 38 1 6.0656 2.6078 3.1835 39 1 3.7617 3.5244 3.2048 40 1 3.8016 1.9125 2.4504 41 1 3.8203 4.5766 0.9607 42 1 2.4230 3.4849 1.1181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083392813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:35 Heat of formation + Delta-G solvation = -169.757320 kcal Electronic energy + Delta-G solvation = -23865.522760 eV Core-core repulsion = 20422.775658 eV Total energy + Delta-G solvation = -3442.747102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -42.11460 -40.21495 -38.96634 -37.41412 -35.43974 -34.52425 -32.68114 -31.61122 -30.26006 -28.67868 -27.79565 -26.19551 -23.59333 -22.61744 -22.11301 -21.36646 -19.58625 -19.25054 -18.61896 -17.66193 -17.44004 -17.22904 -16.40253 -16.12386 -15.85996 -15.50910 -15.32420 -14.89262 -14.59316 -14.35057 -14.17209 -14.08161 -13.64090 -13.26696 -13.11375 -13.04330 -12.96648 -12.76147 -12.61364 -12.55737 -12.31149 -12.10683 -12.05325 -11.95179 -11.68302 -11.54238 -11.08209 -10.92661 -10.91960 -10.61982 -9.86462 -9.41372 -8.28361 -6.85520 1.24136 1.39216 1.43549 1.55085 1.82214 2.24725 2.48438 3.14053 3.49499 3.65696 3.67629 3.76929 4.04321 4.13746 4.26682 4.28452 4.30184 4.35325 4.41306 4.52769 4.61271 4.65673 4.66536 4.73190 4.82400 4.87471 5.01981 5.11394 5.22691 5.26882 5.29211 5.31163 5.34763 5.41177 5.48706 5.62848 5.68012 5.87885 6.25492 6.27850 6.80841 6.86538 7.57774 8.51376 8.68938 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.005313 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.069415 B = 5268.534915 C = 6055.783427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.455 3.545 4 O -0.526 6.526 5 C -0.102 4.102 6 C -0.039 4.039 7 C 0.133 3.867 8 N -0.748 5.748 9 C 0.535 3.465 10 O -0.637 6.637 11 C -0.573 4.573 12 H 0.090 0.910 13 C 0.027 3.973 14 N -0.825 5.825 15 Si 0.999 3.001 16 H -0.253 1.253 17 H -0.276 1.276 18 H -0.252 1.252 19 C -0.105 4.105 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.114 4.114 23 C -0.118 4.118 24 H 0.039 0.961 25 H 0.134 0.866 26 H 0.068 0.932 27 H 0.146 0.854 28 H 0.110 0.890 29 H 0.042 0.958 30 H 0.019 0.981 31 H 0.393 0.607 32 H 0.273 0.727 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.653 -9.063 17.614 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.283 6.283 3 C 0.300 3.700 4 O -0.415 6.415 5 C -0.139 4.139 6 C -0.039 4.039 7 C 0.009 3.991 8 N -0.403 5.403 9 C 0.340 3.660 10 O -0.525 6.525 11 C -0.610 4.610 12 H 0.109 0.891 13 C -0.188 4.188 14 N -0.455 5.455 15 Si 0.818 3.182 16 H -0.177 1.177 17 H -0.201 1.201 18 H -0.175 1.175 19 C -0.143 4.143 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.156 4.156 24 H 0.058 0.942 25 H 0.152 0.848 26 H 0.087 0.913 27 H 0.163 0.837 28 H 0.128 0.872 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.228 0.772 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.765 -7.977 17.425 20.013 hybrid contribution -0.432 0.093 -1.018 1.110 sum 5.333 -7.884 16.407 18.968 Atomic orbital electron populations 1.23442 0.75549 1.05483 1.01792 1.86473 1.24463 1.33314 1.84049 1.24336 0.93324 0.81006 0.71355 1.90590 1.68184 1.36866 1.45874 1.21700 0.85919 0.98830 1.07458 1.20514 0.96716 0.93114 0.93578 1.21232 0.99023 0.92976 0.85888 1.45790 1.52467 1.34494 1.07594 1.18677 0.79804 0.84490 0.83076 1.90557 1.41440 1.35104 1.85402 1.21413 1.31190 1.15594 0.92779 0.89144 1.27034 0.92525 0.95896 1.03356 1.70214 1.24511 1.26344 1.24435 0.85054 0.79648 0.78401 0.75062 1.17660 1.20112 1.17550 1.21578 0.91456 1.01823 0.99444 1.21600 1.00691 1.00128 0.92898 1.21552 0.94629 1.00591 0.98613 1.21562 0.96258 1.01247 0.96024 1.21726 1.01255 0.98804 0.93816 0.94200 0.84761 0.91329 0.83657 0.87212 0.93999 0.96264 0.77218 0.91700 0.91603 0.92300 0.90466 0.90256 0.92416 0.90092 0.91278 0.91327 0.92590 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.95 16 2 O -0.37 -10.66 10.56 -51.43 -0.54 -11.20 16 3 C 0.45 14.66 7.37 71.23 0.52 15.19 16 4 O -0.53 -20.62 11.16 21.97 0.25 -20.38 16 5 C -0.10 -2.58 3.89 29.84 0.12 -2.46 16 6 C -0.04 -1.11 0.27 -52.18 -0.01 -1.12 16 7 C 0.13 5.71 4.14 86.38 0.36 6.07 16 8 N -0.75 -34.84 4.97 -467.39 -2.32 -37.16 16 9 C 0.54 32.48 7.75 86.36 0.67 33.15 16 10 O -0.64 -45.46 15.02 -4.33 -0.06 -45.52 16 11 C -0.57 -33.21 9.54 24.83 0.24 -32.98 16 12 H 0.09 4.61 7.85 -2.91 -0.02 4.58 16 13 C 0.03 1.52 5.50 85.31 0.47 1.99 16 14 N -0.83 -52.39 11.83 21.84 0.26 -52.13 16 15 Si 1.00 41.59 29.56 68.60 2.03 43.62 16 16 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 17 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 19 C -0.11 -2.47 4.61 30.59 0.14 -2.33 16 20 C -0.12 -1.83 5.65 30.59 0.17 -1.65 16 21 C -0.12 -1.77 5.92 30.59 0.18 -1.59 16 22 C -0.11 -2.08 5.65 30.59 0.17 -1.91 16 23 C -0.12 -3.15 4.48 30.59 0.14 -3.02 16 24 H 0.04 1.17 8.13 -2.39 -0.02 1.15 16 25 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 27 H 0.15 2.52 4.82 -2.39 -0.01 2.51 16 28 H 0.11 2.70 6.76 -2.39 -0.02 2.68 16 29 H 0.04 2.13 5.62 -2.38 -0.01 2.12 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.39 15.26 6.19 -92.71 -0.57 14.69 16 32 H 0.27 15.74 8.29 -92.71 -0.77 14.97 16 33 H 0.07 1.58 7.10 -2.39 -0.02 1.57 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.03 6.50 -2.39 -0.02 1.01 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.13 6.36 -2.39 -0.02 1.12 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 2.05 5.58 -2.38 -0.01 2.04 16 Total: -1.00 -84.48 326.20 4.42 -80.06 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.46 Total: 31.44 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 4.36 Total: 11.28 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -2.06 Total: -89.29 kcal Atomic # 8 Polarization: -76.74 SS G_CDS: -0.36 Total: -77.10 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -84.48 4.42 -80.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083392813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.701 kcal (2) G-P(sol) polarization free energy of solvation -84.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.13 seconds