Wall clock time and date at job start Tue Mar 31 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 114.00028 * 2 1 4 4 C 1.52996 * 109.47111 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47021 * 67.06054 * 4 3 2 6 6 C 1.46890 * 111.00055 * 290.01743 * 5 4 3 7 7 C 1.50704 * 109.47360 * 299.69599 * 6 5 4 8 8 H 1.07997 * 120.00100 * 354.88644 * 7 6 5 9 9 C 1.37882 * 120.00113 * 174.88004 * 7 6 5 10 10 N 1.31516 * 119.99703 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00074 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46969 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47040 * 119.99992 * 11 9 7 14 14 H 1.48490 * 109.47208 * 240.00402 * 11 9 7 15 15 C 1.46903 * 110.99908 * 53.97589 * 5 4 3 16 16 C 1.50699 * 109.47424 * 66.04221 * 15 5 4 17 17 C 1.34506 * 125.78802 * 90.00155 * 16 15 5 18 18 C 1.41389 * 106.83993 * 179.77611 * 17 16 15 19 19 C 1.34515 * 106.83830 * 0.22520 * 18 17 16 20 20 C 1.50703 * 125.78775 * 180.02562 * 19 18 17 21 21 O 1.42903 * 109.46925 * 89.99914 * 20 19 18 22 22 C 1.42907 * 113.99634 * 179.97438 * 21 20 19 23 23 O 1.34300 * 108.42295 * 0.02562 * 19 18 17 24 24 H 1.08997 * 109.46887 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47034 * 300.00465 * 1 2 3 26 26 H 1.09008 * 109.47004 * 59.99977 * 1 2 3 27 27 H 1.09001 * 109.46911 * 60.00154 * 3 2 1 28 28 H 1.08997 * 109.47329 * 299.99700 * 3 2 1 29 29 H 1.09005 * 109.47419 * 307.06295 * 4 3 2 30 30 H 1.08995 * 109.47259 * 187.06405 * 4 3 2 31 31 H 1.08999 * 109.47519 * 59.69700 * 6 5 4 32 32 H 1.09005 * 109.47406 * 179.69808 * 6 5 4 33 33 H 0.97004 * 119.99683 * 180.02562 * 10 9 7 34 34 H 1.09003 * 109.46564 * 306.04055 * 15 5 4 35 35 H 1.08993 * 109.46784 * 186.04786 * 15 5 4 36 36 H 1.07999 * 126.58516 * 0.03016 * 17 16 15 37 37 H 1.07995 * 126.58144 * 180.26342 * 18 17 16 38 38 H 1.09000 * 109.47312 * 210.00044 * 20 19 18 39 39 H 1.09001 * 109.47273 * 329.99928 * 20 19 18 40 40 H 1.09002 * 109.47070 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.47128 * 300.00361 * 22 21 20 42 42 H 1.09002 * 109.46836 * 60.00074 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9815 0.6076 -1.2746 6 6 3.6015 -0.8078 -1.3734 7 6 4.2436 -1.5801 -0.2498 8 1 4.9362 -1.0880 0.4168 9 6 3.9467 -2.9149 -0.0729 10 7 3.1035 -3.5142 -0.8850 11 14 4.7420 -3.8719 1.3203 12 1 5.6446 -2.9744 2.0852 13 1 3.6879 -4.3996 2.2233 14 1 5.5255 -5.0022 0.7603 15 6 3.4559 1.3746 -2.4119 16 6 4.0625 2.7541 -2.4109 17 6 5.1998 3.1137 -3.0327 18 6 5.3900 4.4907 -2.7743 19 6 4.3602 4.8889 -2.0059 20 6 4.1404 6.2843 -1.4808 21 8 3.3637 7.0299 -2.4205 22 6 3.0962 8.3743 -2.0165 23 8 3.5613 3.8321 -1.7860 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.6887 1.8464 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8485 0.5387 0.8210 30 1 3.9782 2.1726 0.1270 31 1 2.5175 -0.8988 -1.3038 32 1 3.9390 -1.2088 -2.3292 33 1 2.8944 -4.4532 -0.7602 34 1 2.3721 1.4541 -2.3266 35 1 3.7108 0.8662 -3.3417 36 1 5.8420 2.4745 -3.6203 37 1 6.2053 5.1051 -3.1267 38 1 3.6108 6.2353 -0.5294 39 1 5.1034 6.7739 -1.3358 40 1 2.5029 8.8728 -2.7830 41 1 2.5448 8.3683 -1.0763 42 1 4.0375 8.9074 -1.8822 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093099902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:47 Heat of formation + Delta-G solvation = -54.465275 kcal Electronic energy + Delta-G solvation = -22988.242337 eV Core-core repulsion = 19550.494674 eV Total energy + Delta-G solvation = -3437.747663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.35911 -38.20024 -37.95998 -35.78271 -32.84952 -32.55277 -31.27356 -29.09423 -28.36355 -26.61486 -25.92625 -25.16858 -23.63811 -22.49132 -21.51018 -20.25569 -19.40848 -16.97025 -16.79054 -16.25475 -16.04981 -15.98084 -15.81501 -15.50311 -14.90336 -14.50005 -14.23576 -13.85585 -13.68763 -13.54234 -12.88938 -12.59158 -12.43750 -12.02479 -11.98535 -11.88517 -11.67215 -11.41808 -11.15411 -11.06252 -11.01193 -10.66275 -10.58593 -10.10763 -10.01567 -9.83234 -9.62312 -9.06947 -8.94562 -8.30242 -8.13404 -7.10548 -5.87478 -3.85021 1.79883 2.77665 3.03731 3.39025 3.46081 3.50703 3.86525 4.44116 4.54986 4.70503 4.90007 4.98827 5.06925 5.08673 5.15272 5.25356 5.31111 5.36911 5.49789 5.58825 5.66208 5.72625 5.83694 5.90366 5.98819 6.03446 6.09263 6.17327 6.26254 6.28819 6.35616 6.76829 6.80454 6.81603 7.31794 7.45389 7.73818 7.87600 7.89963 8.12278 8.31425 8.65841 9.19955 9.75871 11.24021 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.004010 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.342485 B = 6981.014914 C = 7518.947935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.344 6.344 3 C 0.024 3.976 4 C 0.063 3.937 5 N -0.526 5.526 6 C 0.181 3.819 7 C -0.492 4.492 8 H 0.058 0.942 9 C 0.059 3.941 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.287 1.287 15 C 0.121 3.879 16 C 0.030 3.970 17 C -0.207 4.207 18 C -0.177 4.177 19 C -0.041 4.041 20 C 0.148 3.852 21 O -0.387 6.387 22 C 0.031 3.969 23 O -0.171 6.171 24 H 0.082 0.918 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.036 0.964 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.020 0.980 33 H 0.257 0.743 34 H 0.048 0.952 35 H 0.100 0.900 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 19.405 -1.367 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.262 6.262 3 C -0.054 4.054 4 C -0.065 4.065 5 N -0.250 5.250 6 C 0.057 3.943 7 C -0.531 4.531 8 H 0.077 0.923 9 C -0.142 4.142 10 N -0.537 5.537 11 Si 0.720 3.280 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.213 1.213 15 C -0.007 4.007 16 C -0.022 4.022 17 C -0.227 4.227 18 C -0.197 4.197 19 C -0.090 4.090 20 C 0.072 3.928 21 O -0.306 6.306 22 C -0.065 4.065 23 O -0.068 6.068 24 H 0.101 0.899 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.167 0.833 37 H 0.162 0.838 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.068 18.994 -1.414 19.076 hybrid contribution -0.465 -0.204 0.906 1.038 sum -1.533 18.790 -0.508 18.859 Atomic orbital electron populations 1.22678 0.83631 1.02253 0.98346 1.88461 1.17423 1.25735 1.94620 1.23315 0.97343 0.85894 0.98891 1.22195 0.89565 0.99507 0.95273 1.62428 1.58047 1.05499 0.99020 1.20086 0.97510 0.79545 0.97161 1.21048 1.24790 0.94212 1.13046 0.92342 1.24870 0.95359 0.97680 0.96290 1.69969 1.34945 1.10983 1.37784 0.86550 0.79056 0.79948 0.82444 1.19883 1.21331 1.21314 1.20693 0.96918 0.85137 0.97934 1.22760 0.95554 0.88238 0.95607 1.21525 0.98914 0.95391 1.06879 1.21551 1.00539 0.95938 1.01627 1.21648 0.93266 0.88495 1.05637 1.20591 0.96094 0.84614 0.91523 1.88005 1.73261 1.24236 1.45102 1.22769 1.00138 0.82860 1.00768 1.83959 1.46587 1.16827 1.59411 0.89921 0.95324 0.95274 0.94539 0.93976 0.88417 0.91695 0.94179 0.96224 0.93371 0.93459 0.88197 0.83319 0.83800 0.91669 0.90254 0.89406 0.93841 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.34 -7.39 7.58 -35.23 -0.27 -7.66 16 3 C 0.02 0.45 5.69 37.16 0.21 0.66 16 4 C 0.06 1.28 5.46 -3.82 -0.02 1.26 16 5 N -0.53 -11.40 4.74 -237.52 -1.13 -12.52 16 6 C 0.18 4.66 4.29 -4.98 -0.02 4.64 16 7 C -0.49 -13.83 8.21 -34.44 -0.28 -14.11 16 8 H 0.06 1.65 6.98 -52.49 -0.37 1.28 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 11 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 C 0.12 2.25 5.14 -4.97 -0.03 2.22 16 16 C 0.03 0.51 5.90 -35.63 -0.21 0.30 16 17 C -0.21 -3.28 10.81 -39.70 -0.43 -3.71 16 18 C -0.18 -2.51 10.81 -39.70 -0.43 -2.94 16 19 C -0.04 -0.59 6.95 -35.62 -0.25 -0.84 16 20 C 0.15 1.62 6.47 36.01 0.23 1.85 16 21 O -0.39 -4.57 10.69 -35.23 -0.38 -4.95 16 22 C 0.03 0.23 11.01 101.05 1.11 1.34 16 23 O -0.17 -2.88 10.23 5.70 0.06 -2.83 16 24 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.45 8.14 -51.92 -0.42 0.02 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.76 5.80 -51.93 -0.30 0.46 16 29 H 0.10 2.18 6.33 -51.93 -0.33 1.85 16 30 H 0.06 1.21 7.14 -51.93 -0.37 0.84 16 31 H 0.04 1.11 5.29 -51.93 -0.27 0.83 16 32 H 0.02 0.54 8.05 -51.93 -0.42 0.13 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.05 0.88 5.71 -51.93 -0.30 0.58 16 35 H 0.10 1.77 8.01 -51.93 -0.42 1.35 16 36 H 0.15 2.17 8.06 -52.49 -0.42 1.74 16 37 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -32.33 345.60 -6.44 -38.77 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.56 Total: -0.89 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 0.91 Total: -6.16 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: -0.39 Total: -38.51 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.59 Total: -15.43 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.33 -6.44 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093099902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.695 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds