Wall clock time and date at job start Tue Mar 31 2020 06:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99958 * 2 1 4 4 H 1.48493 * 109.47280 * 240.00003 * 3 2 1 5 5 H 1.48504 * 109.46836 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46961 * 119.99981 * 3 2 1 7 7 C 1.38806 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00553 * 197.23620 * 7 2 1 9 9 N 1.36940 * 119.99797 * 16.96407 * 7 2 1 10 10 C 1.46928 * 120.62967 * 207.67954 * 9 7 2 11 11 C 1.52764 * 109.00952 * 233.58619 * 10 9 7 12 12 C 1.53044 * 109.37900 * 305.59004 * 11 10 9 13 13 N 1.46504 * 109.45656 * 181.26125 * 12 11 10 14 14 C 1.34779 * 120.00121 * 84.93277 * 13 12 11 15 15 O 1.21591 * 119.99667 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00234 * 180.02562 * 14 13 12 17 17 C 1.46494 * 120.00180 * 179.97438 * 16 14 13 18 18 H 1.09004 * 110.43756 * 323.91046 * 17 16 14 19 19 C 1.54803 * 110.49013 * 201.21978 * 17 16 14 20 20 C 1.54993 * 102.09712 * 220.44593 * 19 17 16 21 21 O 1.44385 * 103.48921 * 37.02013 * 20 19 17 22 22 C 1.43746 * 106.97597 * 319.94466 * 21 20 19 23 23 C 1.53035 * 109.54058 * 61.24171 * 12 11 10 24 24 C 1.46923 * 120.63092 * 27.96536 * 9 7 2 25 25 H 0.97000 * 120.00227 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.58757 * 353.42194 * 10 9 7 27 27 H 1.08997 * 109.58464 * 113.84580 * 10 9 7 28 28 H 1.08997 * 109.56143 * 185.55562 * 11 10 9 29 29 H 1.08995 * 109.36287 * 65.49689 * 11 10 9 30 30 H 1.09001 * 109.45095 * 301.22202 * 12 11 10 31 31 H 0.96996 * 120.00187 * 264.93203 * 13 12 11 32 32 H 0.97003 * 119.99343 * 0.02562 * 16 14 13 33 33 H 1.09002 * 110.90859 * 338.64638 * 19 17 16 34 34 H 1.09003 * 110.90996 * 102.24660 * 19 17 16 35 35 H 1.09006 * 110.61845 * 278.52376 * 20 19 17 36 36 H 1.08999 * 110.62443 * 155.52427 * 20 19 17 37 37 H 1.08998 * 109.87798 * 267.08868 * 22 21 20 38 38 H 1.08996 * 109.87786 * 145.93606 * 22 21 20 39 39 H 1.09000 * 109.49828 * 178.68218 * 23 12 11 40 40 H 1.09001 * 109.49742 * 58.58091 * 23 12 11 41 41 H 1.09001 * 109.58556 * 246.15531 * 24 9 7 42 42 H 1.09005 * 109.58879 * 6.57688 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0539 -1.2230 0.2777 9 7 1.3702 -2.3624 -0.3450 10 6 1.8205 -3.6540 0.1915 11 6 2.0692 -4.6154 -0.9693 12 6 0.8119 -4.6990 -1.8378 13 7 1.0383 -5.6436 -2.9345 14 6 0.8371 -6.9621 -2.7407 15 8 0.4681 -7.3676 -1.6554 16 7 1.0458 -7.8312 -3.7494 17 6 0.8276 -9.2644 -3.5385 18 1 1.1256 -9.5504 -2.5297 19 6 1.6050 -10.0915 -4.5911 20 6 0.5894 -11.2089 -4.9408 21 8 -0.6840 -10.5292 -4.9071 22 6 -0.6490 -9.6276 -3.7881 23 6 0.4942 -3.3168 -2.4128 24 6 0.2242 -2.3400 -1.2641 25 1 -0.4850 0.8400 0.0004 26 1 2.7443 -3.5144 0.7529 27 1 1.0518 -4.0660 0.8453 28 1 2.3082 -5.6047 -0.5789 29 1 2.9023 -4.2495 -1.5694 30 1 -0.0264 -5.0413 -1.2310 31 1 1.3330 -5.3202 -3.8002 32 1 1.3413 -7.5077 -4.6149 33 1 1.8353 -9.4868 -5.4683 34 1 2.5138 -10.5126 -4.1612 35 1 0.6204 -12.0030 -4.1947 36 1 0.7852 -11.6080 -5.9360 37 1 -1.0650 -10.1149 -2.9063 38 1 -1.2181 -8.7273 -4.0197 39 1 -0.3877 -3.3818 -3.0500 40 1 1.3422 -2.9631 -2.9993 41 1 -0.6774 -2.6427 -0.7314 42 1 0.0950 -1.3338 -1.6628 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094890738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:44 Heat of formation + Delta-G solvation = -54.481811 kcal Electronic energy + Delta-G solvation = -22697.598448 eV Core-core repulsion = 19292.142818 eV Total energy + Delta-G solvation = -3405.455629 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.41960 -39.19691 -37.42394 -34.73059 -34.32207 -32.20865 -31.08729 -30.09801 -29.44265 -28.42143 -24.99024 -23.30697 -22.39734 -22.12070 -21.33637 -20.56044 -19.44094 -18.19402 -17.16330 -16.80173 -16.47323 -15.84376 -15.25037 -14.97472 -14.78768 -14.37274 -14.01409 -13.70530 -13.53918 -13.27087 -12.99357 -12.74700 -12.51631 -12.27338 -12.05441 -11.85022 -11.45772 -11.32366 -11.10316 -10.85529 -10.71388 -10.49803 -10.27006 -10.10448 -10.04935 -10.02106 -9.74683 -9.54352 -9.21084 -8.62287 -8.43780 -6.68393 -5.79109 -3.20854 2.69701 3.28348 3.38471 3.44191 3.45278 3.63434 4.12477 4.30223 4.49803 4.53324 4.66466 4.78535 4.97523 5.29114 5.32016 5.34465 5.41439 5.45541 5.51433 5.56417 5.61356 5.66847 5.90358 6.08704 6.30517 6.35853 6.37906 6.46900 6.53474 6.58372 6.61606 6.80793 6.88881 6.99189 7.09410 7.32938 7.62472 7.79206 8.10413 8.44945 8.70894 9.21266 9.84580 10.41503 11.29984 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.052147 B = 0.002957 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.812325 B = 9465.560503 C = 9551.050273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.148 3.852 11 C -0.139 4.139 12 C 0.168 3.832 13 N -0.738 5.738 14 C 0.701 3.299 15 O -0.589 6.589 16 N -0.744 5.744 17 C 0.134 3.866 18 H 0.103 0.897 19 C -0.162 4.162 20 C 0.047 3.953 21 O -0.379 6.379 22 C 0.034 3.966 23 C -0.146 4.146 24 C 0.175 3.825 25 H 0.255 0.745 26 H 0.055 0.945 27 H 0.020 0.980 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.391 0.609 32 H 0.395 0.605 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.021 0.979 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.871 -18.426 -11.815 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.180 4.180 12 C 0.065 3.935 13 N -0.391 5.391 14 C 0.401 3.599 15 O -0.467 6.467 16 N -0.401 5.401 17 C 0.028 3.972 18 H 0.121 0.879 19 C -0.200 4.200 20 C -0.030 4.030 21 O -0.297 6.297 22 C -0.044 4.044 23 C -0.186 4.186 24 C 0.048 3.952 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.224 0.776 32 H 0.230 0.770 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.227 -18.649 -10.891 21.711 hybrid contribution 0.913 1.194 -0.701 1.659 sum 3.140 -17.455 -11.593 21.187 Atomic orbital electron populations 1.70013 1.05241 1.25640 1.53914 1.25043 0.95292 0.98406 1.00938 0.86359 0.78890 0.83339 0.78110 1.21080 1.21641 1.20888 1.19160 0.92649 0.84782 1.41639 0.91675 1.44084 1.35549 1.01555 1.50383 1.20789 0.97860 0.86520 0.92765 1.22322 0.97251 0.99498 0.98902 1.20929 0.98348 0.87574 0.86688 1.45562 1.72618 1.04849 1.16059 1.16052 0.78452 0.81384 0.84018 1.90926 1.53558 1.77854 1.24387 1.45213 1.74674 1.05952 1.14233 1.22128 0.94405 0.79955 1.00745 0.87905 1.23424 0.99415 0.97846 0.99330 1.23528 0.82539 0.94513 1.02404 1.88906 1.34919 1.56447 1.49477 1.23730 0.96914 0.94128 0.89615 1.22548 1.00484 0.94727 1.00887 1.20750 0.88884 0.97928 0.87633 0.93543 0.92627 0.96183 0.92694 0.92498 0.90037 0.77587 0.77036 0.89792 0.89236 0.91765 0.88666 0.91395 0.89272 0.92750 0.92240 0.96073 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 11.18 55.49 0.62 -25.47 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 8 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.86 3.00 -172.58 -0.52 -15.38 16 10 C 0.15 3.20 6.49 -3.93 -0.03 3.18 16 11 C -0.14 -2.57 5.64 -26.83 -0.15 -2.72 16 12 C 0.17 2.95 2.42 -67.89 -0.16 2.78 16 13 N -0.74 -10.29 5.08 -58.63 -0.30 -10.59 16 14 C 0.70 10.24 8.52 -86.91 -0.74 9.50 16 15 O -0.59 -11.08 15.71 5.29 0.08 -11.00 16 16 N -0.74 -7.70 5.05 -57.18 -0.29 -7.98 16 17 C 0.13 1.29 3.35 -66.41 -0.22 1.06 16 18 H 0.10 1.12 7.66 -51.93 -0.40 0.73 16 19 C -0.16 -1.04 6.87 -24.73 -0.17 -1.21 16 20 C 0.05 0.32 7.72 38.21 0.29 0.62 16 21 O -0.38 -3.96 11.52 -35.23 -0.41 -4.37 16 22 C 0.03 0.36 7.50 37.73 0.28 0.64 16 23 C -0.15 -2.67 5.55 -26.61 -0.15 -2.82 16 24 C 0.17 4.10 5.31 -3.71 -0.02 4.08 16 25 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 31 H 0.39 4.32 8.62 -40.82 -0.35 3.96 16 32 H 0.40 3.01 8.36 -40.82 -0.34 2.67 16 33 H 0.08 0.47 7.75 -51.93 -0.40 0.07 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.03 7.93 -51.93 -0.41 0.62 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 2.40 6.04 -51.93 -0.31 2.08 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -32.44 335.80 -8.87 -41.31 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.80 Total: 3.90 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -1.29 Total: 8.01 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.48 Total: -59.42 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.32 Total: -15.37 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.44 -8.87 -41.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094890738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.169 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds