Wall clock time and date at job start Tue Mar 31 2020 06:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.53000 * 109.46840 * 269.99975 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47291 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99920 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00162 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99868 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47023 * 90.00014 * 11 9 7 13 13 H 1.48496 * 109.47251 * 210.00457 * 11 9 7 14 14 H 1.48498 * 109.47139 * 330.00202 * 11 9 7 15 15 C 1.39623 * 119.99540 * 269.99727 * 3 2 1 16 16 C 1.40044 * 119.65661 * 179.73211 * 15 3 2 17 17 C 1.35904 * 120.90952 * 179.71195 * 16 15 3 18 18 C 1.40596 * 119.90855 * 0.55194 * 17 16 15 19 19 C 1.40539 * 121.13352 * 179.72500 * 18 17 16 20 20 C 1.36100 * 119.69718 * 180.02562 * 19 18 17 21 21 C 1.39375 * 120.99765 * 0.02562 * 20 19 18 22 22 C 1.36092 * 120.96772 * 359.97438 * 21 20 19 23 23 C 1.40590 * 119.66120 * 0.02562 * 22 21 20 24 24 C 1.37738 * 119.66435 * 0.02562 * 15 3 2 25 25 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 26 26 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 28 28 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 29 29 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 30 30 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 31 31 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 32 32 H 1.09001 * 109.47194 * 299.99493 * 5 4 3 33 33 H 1.08992 * 109.47399 * 59.99666 * 5 4 3 34 34 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 35 35 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 36 36 H 0.96996 * 119.99309 * 179.97438 * 10 9 7 37 37 H 1.07996 * 119.54520 * 359.97438 * 16 15 3 38 38 H 1.07997 * 120.04492 * 180.28656 * 17 16 15 39 39 H 1.07998 * 120.15011 * 0.05624 * 19 18 17 40 40 H 1.07992 * 119.50307 * 180.02562 * 20 19 18 41 41 H 1.07999 * 119.51556 * 179.97438 * 21 20 19 42 42 H 1.07996 * 120.16630 * 180.02562 * 22 21 20 43 43 H 1.07994 * 120.25193 * 0.02562 * 24 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 0.9874 2.7932 1.7103 6 6 1.2426 3.5150 3.0349 7 6 -0.0130 4.2259 3.4697 8 1 -0.9039 4.1689 2.8617 9 6 -0.0247 4.9491 4.6435 10 7 -1.1204 5.5699 5.0226 11 14 1.5158 5.0471 5.6954 12 1 2.3293 6.2159 5.2741 13 1 1.1324 5.1992 7.1219 14 1 2.3106 3.8041 5.5263 15 6 2.2510 2.0394 -1.2092 16 6 2.7123 3.3616 -1.2010 17 6 2.9528 4.0244 -2.3628 18 6 2.7268 3.3849 -3.5944 19 6 2.9613 4.0479 -4.8112 20 6 2.7322 3.4011 -5.9865 21 6 2.2667 2.0875 -6.0040 22 6 2.0283 1.4135 -4.8460 23 6 2.2534 2.0489 -3.6122 24 6 2.0186 1.3835 -2.3980 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.0644 2.7986 1.1383 31 1 2.5506 1.3453 2.0283 32 1 0.6993 3.5198 0.9506 33 1 0.1856 2.0665 1.8406 34 1 1.5309 2.7887 3.7949 35 1 2.0444 4.2418 2.9042 36 1 -1.1286 6.0783 5.8486 37 1 2.8834 3.8600 -0.2583 38 1 3.3128 5.0423 -2.3401 39 1 3.3222 5.0658 -4.8135 40 1 2.9139 3.9133 -6.9197 41 1 2.0927 1.5972 -6.9505 42 1 1.6681 0.3958 -4.8747 43 1 1.6579 0.3656 -2.3963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102400012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:07 Heat of formation + Delta-G solvation = 35.401345 kcal Electronic energy + Delta-G solvation = -21432.956045 eV Core-core repulsion = 18442.247305 eV Total energy + Delta-G solvation = -2990.708740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.31897 -38.24704 -35.40037 -33.97196 -32.50536 -31.88613 -30.94363 -29.25918 -28.73530 -26.46864 -23.86837 -23.25167 -22.59114 -21.63574 -20.75666 -20.16890 -17.48597 -17.15860 -16.77475 -16.52609 -15.21842 -14.80072 -14.66987 -14.27486 -14.14917 -13.86149 -13.70585 -13.25423 -13.16343 -13.05115 -12.85449 -12.63679 -12.21659 -12.00817 -11.87902 -11.45042 -11.40696 -11.13949 -11.06066 -10.95762 -10.80271 -10.54873 -10.04902 -9.90238 -9.82554 -9.70874 -9.25107 -9.06291 -8.56344 -8.05788 -6.93687 -6.06349 -4.04698 0.69253 1.25719 2.21904 3.15164 3.25837 3.28052 3.35703 3.38038 4.28873 4.42393 4.67797 4.90306 4.91199 5.02007 5.14258 5.25737 5.27187 5.30764 5.31561 5.39296 5.46314 5.46974 5.52817 5.76054 5.76871 5.82792 5.87347 5.96145 6.04092 6.12742 6.16746 6.30082 6.34461 6.43754 6.49185 6.53124 6.61148 6.71214 6.84538 6.90600 7.06458 7.26634 7.35588 7.46577 7.66042 7.77018 8.52156 8.98887 9.55736 11.07216 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.003647 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.691754 B = 7675.992582 C = 8359.963835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.120 3.880 3 N -0.620 5.620 4 C 0.115 3.885 5 C -0.120 4.120 6 C -0.012 4.012 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.066 3.934 10 N -0.904 5.904 11 Si 0.880 3.120 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.266 1.266 15 C 0.236 3.764 16 C -0.163 4.163 17 C -0.066 4.066 18 C -0.103 4.103 19 C -0.085 4.085 20 C -0.151 4.151 21 C -0.109 4.109 22 C -0.127 4.127 23 C 0.003 3.997 24 C -0.225 4.225 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.015 0.985 35 H 0.011 0.989 36 H 0.263 0.737 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.412 -9.524 -18.214 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.003 4.003 3 N -0.327 5.327 4 C -0.007 4.007 5 C -0.158 4.158 6 C -0.050 4.050 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.135 4.135 10 N -0.543 5.543 11 Si 0.708 3.292 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.190 1.190 15 C 0.132 3.868 16 C -0.183 4.183 17 C -0.085 4.085 18 C -0.104 4.104 19 C -0.103 4.103 20 C -0.170 4.170 21 C -0.127 4.127 22 C -0.145 4.145 23 C 0.003 3.997 24 C -0.250 4.250 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.317 -9.512 -17.844 22.264 hybrid contribution 0.544 0.216 0.717 0.926 sum 9.861 -9.296 -17.126 21.839 Atomic orbital electron populations 1.22314 0.96199 1.01642 1.03353 1.21390 0.94384 0.82429 1.02130 1.46890 1.69656 1.12919 1.03269 1.21801 0.99018 0.96355 0.83568 1.21954 0.95824 0.99014 0.99052 1.19528 0.97608 0.95290 0.92548 1.21117 0.97387 1.30187 1.07065 0.91139 1.25047 0.96003 0.95003 0.97492 1.69921 1.27380 1.33332 1.23623 0.86772 0.83868 0.78936 0.79650 1.20285 1.21406 1.19040 1.17819 0.91883 0.91137 0.85970 1.20720 1.04416 0.93843 0.99345 1.20837 0.97391 0.99117 0.91138 1.17964 1.04618 0.94276 0.93589 1.20971 0.98371 0.99143 0.91825 1.20653 1.03072 0.95414 0.97816 1.20755 0.99147 0.94862 0.97909 1.20901 1.02166 0.99751 0.91716 1.17754 0.96180 0.92684 0.93124 1.20499 1.13653 1.00828 0.90017 0.92373 0.92231 0.91387 0.91055 0.90908 0.91082 0.91119 0.92515 0.92335 0.96674 0.97109 0.92733 0.85161 0.85589 0.86165 0.86695 0.86677 0.86255 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.12 1.39 5.90 -4.04 -0.02 1.37 16 3 N -0.62 -8.64 2.61 -171.77 -0.45 -9.09 16 4 C 0.11 1.75 5.18 -4.04 -0.02 1.73 16 5 C -0.12 -2.29 5.48 -26.73 -0.15 -2.44 16 6 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 7 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 10 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 11 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 15 C 0.24 3.40 6.55 -83.82 -0.55 2.86 16 16 C -0.16 -2.34 9.11 -39.74 -0.36 -2.70 16 17 C -0.07 -0.87 9.74 -39.53 -0.39 -1.26 16 18 C -0.10 -1.38 5.74 -106.80 -0.61 -2.00 16 19 C -0.09 -0.98 9.76 -39.48 -0.39 -1.36 16 20 C -0.15 -1.59 9.95 -39.93 -0.40 -1.99 16 21 C -0.11 -1.14 9.95 -39.93 -0.40 -1.54 16 22 C -0.13 -1.47 9.77 -39.47 -0.39 -1.86 16 23 C 0.00 0.05 5.74 -106.84 -0.61 -0.57 16 24 C -0.23 -3.05 8.95 -38.94 -0.35 -3.40 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.95 6.26 -51.93 -0.33 0.63 16 28 H 0.07 0.73 6.17 -51.93 -0.32 0.41 16 29 H 0.07 0.77 7.89 -51.93 -0.41 0.36 16 30 H 0.07 1.04 6.17 -51.93 -0.32 0.72 16 31 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.15 6.26 -51.93 -0.33 0.82 16 34 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 35 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.13 1.86 6.08 -52.49 -0.32 1.54 16 38 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.47 6.08 -52.49 -0.32 1.15 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -31.32 344.61 -10.42 -41.75 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.48 Total: 1.02 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -4.79 Total: -28.55 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.33 Total: -36.25 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.32 -10.42 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102400012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.146 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds