Wall clock time and date at job start Tue Mar 31 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99785 * 2 1 4 4 O 1.20822 * 120.00157 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00018 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47221 * 179.97438 * 5 3 2 7 7 C 1.37100 * 119.99857 * 274.33307 * 6 5 3 8 8 H 1.07995 * 120.00083 * 332.73954 * 7 6 5 9 9 C 1.38955 * 119.99878 * 152.73277 * 7 6 5 10 10 N 1.31411 * 119.99847 * 110.95234 * 9 7 6 11 11 Si 1.86804 * 120.00121 * 290.95042 * 9 7 6 12 12 H 1.48507 * 109.46848 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47128 * 120.00008 * 11 9 7 14 14 H 1.48498 * 109.46956 * 240.00230 * 11 9 7 15 15 C 1.34774 * 120.00522 * 94.33064 * 6 5 3 16 16 O 1.21286 * 120.00677 * 173.78627 * 15 6 5 17 17 C 1.50704 * 119.99741 * 353.79544 * 15 6 5 18 18 C 1.50469 * 109.63087 * 84.12984 * 17 15 6 19 19 C 1.54071 * 112.50044 * 213.86047 * 18 17 15 20 20 C 1.54066 * 112.81652 * 318.28011 * 19 18 17 21 21 C 1.50476 * 112.49754 * 318.28986 * 20 19 18 22 22 C 1.54229 * 108.51692 * 94.15232 * 21 20 19 23 23 C 1.45538 * 112.41145 * 280.00056 * 22 21 20 24 24 H 1.08992 * 109.47627 * 300.00518 * 1 2 3 25 25 H 1.09003 * 109.46952 * 60.01005 * 1 2 3 26 26 H 1.09003 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47250 * 59.99254 * 5 3 2 28 28 H 1.09002 * 109.46680 * 299.99361 * 5 3 2 29 29 H 0.96997 * 119.99660 * 184.93284 * 10 9 7 30 30 H 1.09001 * 109.78089 * 323.64892 * 17 15 6 31 31 H 1.09006 * 108.87716 * 334.63706 * 18 17 15 32 32 H 1.08997 * 108.88137 * 93.17904 * 18 17 15 33 33 H 1.09003 * 108.81110 * 197.42310 * 19 18 17 34 34 H 1.09002 * 108.81532 * 79.14456 * 19 18 17 35 35 H 1.08995 * 108.87877 * 197.50774 * 20 19 18 36 36 H 1.09000 * 108.87483 * 79.06069 * 20 19 18 37 37 H 1.09002 * 109.62718 * 213.86449 * 21 20 19 38 38 H 1.09003 * 109.62435 * 334.24693 * 21 20 19 39 39 H 1.09005 * 108.89627 * 40.75748 * 22 21 20 40 40 H 1.09003 * 108.89753 * 159.24400 * 22 21 20 41 41 H 1.08997 * 108.90135 * 182.69079 * 23 22 21 42 42 H 1.09003 * 108.89511 * 301.28256 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.0895 3.3623 -1.1852 8 1 4.3072 2.8283 -2.0984 9 6 3.9186 4.7411 -1.2105 10 7 4.9443 5.5259 -1.4531 11 14 2.2308 5.4789 -0.8997 12 1 1.2522 4.3895 -0.6528 13 1 2.2905 6.3685 0.2878 14 1 1.8081 6.2651 -2.0865 15 6 4.2577 3.3014 1.1625 16 8 4.7090 4.4272 1.1565 17 6 4.0058 2.5976 2.4710 18 6 5.1813 1.7208 2.8079 19 6 4.7648 0.4341 3.5459 20 6 3.6826 0.6817 4.6141 21 6 3.9341 1.9343 5.4090 22 6 3.1509 3.0928 4.7584 23 6 3.8335 3.6396 3.5951 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 3.9557 0.7810 -0.8907 28 1 3.9563 0.7808 0.8892 29 1 4.8411 6.4890 -1.4003 30 1 3.1049 1.9887 2.3949 31 1 5.6937 1.4480 1.8852 32 1 5.8696 2.2813 3.4404 33 1 5.6434 0.0056 4.0284 34 1 4.3827 -0.2810 2.8174 35 1 3.6579 -0.1691 5.2949 36 1 2.7137 0.7652 4.1217 37 1 3.5929 1.7920 6.4344 38 1 5.0001 2.1619 5.4061 39 1 2.1700 2.7283 4.4532 40 1 3.0174 3.8858 5.4943 41 1 3.2572 4.4812 3.2108 42 1 4.8180 3.9956 3.8984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120714985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:48 Heat of formation + Delta-G solvation = -107.242524 kcal Electronic energy + Delta-G solvation = -24620.177990 eV Core-core repulsion = 21180.141734 eV Total energy + Delta-G solvation = -3440.036257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.09636 -39.22076 -37.32561 -35.84586 -34.11462 -32.66233 -32.12879 -31.50722 -28.56723 -26.44284 -25.72377 -24.30809 -23.70958 -21.12205 -20.41604 -19.61135 -18.56328 -17.20713 -16.94188 -16.40952 -15.94101 -15.44954 -14.94778 -14.74637 -14.45434 -14.16423 -13.88204 -13.41607 -13.26942 -12.93608 -12.76944 -12.59695 -12.30219 -12.22376 -11.92537 -11.75099 -11.52351 -11.34278 -10.74207 -10.70209 -10.55410 -10.50509 -10.38287 -10.34910 -10.23412 -10.12017 -9.99083 -9.84056 -9.47369 -8.67158 -8.13439 -7.51621 -6.64351 -3.44428 2.88156 3.09953 3.37602 3.61910 3.82671 4.17028 4.36826 4.69959 4.86093 4.88808 5.02649 5.08642 5.33017 5.35184 5.39719 5.42650 5.43693 5.49879 5.52044 5.61820 5.70852 5.75779 5.82050 5.87340 5.98566 6.01235 6.14361 6.24700 6.27860 6.37194 6.40355 6.48154 6.54747 6.62294 6.76643 6.82989 6.89342 7.58152 8.04616 8.43524 8.87814 9.20307 9.54832 10.16383 10.40271 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013660 B = 0.008830 C = 0.006616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.302494 B = 3170.213709 C = 4231.434540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.374 6.374 3 C 0.425 3.575 4 O -0.477 6.477 5 C 0.108 3.892 6 N -0.413 5.413 7 C -0.468 4.468 8 H 0.092 0.908 9 C 0.196 3.804 10 N -0.722 5.722 11 Si 0.776 3.224 12 H -0.226 1.226 13 H -0.282 1.282 14 H -0.289 1.289 15 C 0.450 3.550 16 O -0.544 6.544 17 C -0.097 4.097 18 C -0.109 4.109 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.097 4.097 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.276 0.724 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.590 -11.979 9.433 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.291 6.291 3 C 0.264 3.736 4 O -0.361 6.361 5 C -0.019 4.019 6 N -0.134 5.134 7 C -0.585 4.585 8 H 0.110 0.890 9 C -0.032 4.032 10 N -0.342 5.342 11 Si 0.595 3.405 12 H -0.148 1.148 13 H -0.208 1.208 14 H -0.216 1.216 15 C 0.241 3.759 16 O -0.425 6.425 17 C -0.119 4.119 18 C -0.147 4.147 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.152 4.152 23 C -0.135 4.135 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.413 -10.935 9.294 14.751 hybrid contribution -1.497 0.528 0.017 1.587 sum -4.909 -10.406 9.311 14.802 Atomic orbital electron populations 1.23087 0.78183 1.02536 1.02077 1.86567 1.22223 1.35242 1.85096 1.25666 0.93684 0.81232 0.72980 1.90763 1.66575 1.35783 1.42929 1.21627 0.85720 0.89933 1.04602 1.43389 1.55928 1.07633 1.06407 1.17862 1.63765 0.89847 0.87070 0.89043 1.24878 0.95296 0.95552 0.87487 1.70522 1.30418 1.06047 1.27263 0.88433 0.93327 0.80940 0.77765 1.14782 1.20795 1.21598 1.19892 0.83899 0.88078 0.84044 1.90589 1.47448 1.18864 1.85596 1.20980 0.98894 0.97212 0.94772 1.21336 0.97480 0.95460 1.00433 1.21956 0.98465 0.97450 0.97535 1.21340 0.99351 0.97544 0.97359 1.21343 1.00937 0.95060 0.98101 1.20518 0.99203 0.97933 0.97573 1.20217 1.01592 0.97885 0.93831 0.92623 0.92415 0.88985 0.87545 0.88082 0.91369 0.90978 0.91547 0.91561 0.92255 0.92242 0.92704 0.92252 0.92511 0.91499 0.92590 0.92540 0.91849 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.37 -6.03 10.57 -39.26 -0.41 -6.44 16 3 C 0.42 8.31 7.54 36.01 0.27 8.58 16 4 O -0.48 -11.25 14.18 -18.75 -0.27 -11.52 16 5 C 0.11 2.05 5.55 -5.19 -0.03 2.02 16 6 N -0.41 -10.12 2.07 -116.10 -0.24 -10.36 16 7 C -0.47 -13.12 9.24 -14.93 -0.14 -13.26 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 9 C 0.20 5.70 3.17 -17.47 -0.06 5.64 16 10 N -0.72 -21.23 13.69 55.50 0.76 -20.47 16 11 Si 0.78 21.36 28.59 -169.99 -4.86 16.50 16 12 H -0.23 -6.34 5.29 56.52 0.30 -6.04 16 13 H -0.28 -8.10 7.11 56.52 0.40 -7.70 16 14 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 15 C 0.45 11.07 5.88 -10.98 -0.06 11.00 16 16 O -0.54 -15.69 13.71 5.55 0.08 -15.61 16 17 C -0.10 -1.81 1.35 -92.38 -0.12 -1.93 16 18 C -0.11 -1.69 3.98 -27.44 -0.11 -1.80 16 19 C -0.12 -1.40 5.78 -25.62 -0.15 -1.55 16 20 C -0.12 -1.36 5.31 -27.44 -0.15 -1.51 16 21 C -0.12 -1.38 5.60 -27.35 -0.15 -1.54 16 22 C -0.11 -1.62 5.26 -29.61 -0.16 -1.77 16 23 C -0.10 -1.74 4.17 -29.60 -0.12 -1.87 16 24 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 25 H 0.06 0.79 8.13 -51.93 -0.42 0.36 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.11 1.84 8.07 -51.93 -0.42 1.42 16 28 H 0.10 1.60 4.80 -51.93 -0.25 1.36 16 29 H 0.28 7.60 8.32 -40.82 -0.34 7.26 16 30 H 0.07 1.31 5.68 -51.93 -0.29 1.02 16 31 H 0.07 1.08 7.15 -51.93 -0.37 0.71 16 32 H 0.07 1.02 6.63 -51.93 -0.34 0.68 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.67 7.62 -51.93 -0.40 0.28 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.73 6.63 -51.93 -0.34 0.39 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.80 6.99 -51.93 -0.36 0.44 16 39 H 0.06 0.80 7.47 -51.93 -0.39 0.41 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.32 7.77 -51.93 -0.40 0.91 16 42 H 0.06 1.15 7.47 -51.93 -0.39 0.77 16 LS Contribution 325.32 15.07 4.90 4.90 Total: -1.00 -34.32 325.32 -6.53 -40.86 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.58 Total: -1.41 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.09 Total: 3.55 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.52 Total: -30.83 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.60 Total: -33.57 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.86 Total: 16.50 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.32 -6.53 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120714985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.387 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds