Wall clock time and date at job start Tue Mar 31 2020 06:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 N 1.46891 * 109.47536 * 120.00551 * 2 1 3 5 5 C 1.46903 * 111.00100 * 274.99825 * 4 2 1 6 6 C 1.52997 * 109.47596 * 179.97438 * 5 4 2 7 7 C 1.52993 * 109.47321 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47164 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00158 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00155 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99787 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00213 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46660 * 60.00811 * 12 10 8 14 14 H 1.48501 * 109.47049 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47493 * 300.00649 * 12 10 8 16 16 C 1.50699 * 109.46556 * 240.00380 * 2 1 3 17 17 C 1.36130 * 120.17535 * 264.99475 * 16 2 1 18 18 C 1.39329 * 120.99258 * 180.02562 * 17 16 2 19 19 C 1.36125 * 120.98923 * 359.97438 * 18 17 16 20 20 C 1.40501 * 119.65263 * 0.02562 * 19 18 17 21 21 C 1.40557 * 121.28769 * 179.97438 * 20 19 18 22 22 C 1.36081 * 119.65010 * 180.02562 * 21 20 19 23 23 C 1.39383 * 120.99897 * 0.02562 * 22 21 20 24 24 C 1.36094 * 120.98995 * 359.95151 * 23 22 21 25 25 C 1.40507 * 120.17537 * 85.02227 * 16 2 1 26 26 H 1.08997 * 109.47380 * 59.99196 * 1 2 3 27 27 H 1.09001 * 109.47166 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46531 * 299.99568 * 1 2 3 29 29 H 1.00903 * 111.00427 * 151.04351 * 4 2 1 30 30 H 1.09004 * 109.47208 * 300.00024 * 5 4 2 31 31 H 1.08997 * 109.47132 * 59.99597 * 5 4 2 32 32 H 1.08997 * 109.47364 * 300.00440 * 6 5 4 33 33 H 1.09005 * 109.46628 * 60.00197 * 6 5 4 34 34 H 1.09004 * 109.47635 * 300.00301 * 7 6 5 35 35 H 1.08998 * 109.47171 * 60.00560 * 7 6 5 36 36 H 0.97000 * 119.99620 * 179.97438 * 11 10 8 37 37 H 1.08000 * 119.50276 * 0.04795 * 17 16 2 38 38 H 1.07998 * 119.50912 * 179.97438 * 18 17 16 39 39 H 1.07998 * 120.17668 * 179.72489 * 19 18 17 40 40 H 1.07995 * 120.17070 * 0.02562 * 21 20 19 41 41 H 1.08000 * 119.50492 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.50833 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.16912 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0826 0.2224 2.3468 6 6 2.5953 -0.5333 3.5743 7 6 2.6613 0.4198 4.7693 8 6 3.1657 -0.3248 5.9785 9 1 3.4146 -1.3729 5.9022 10 6 3.3103 0.3323 7.1820 11 7 3.0076 1.6088 7.2747 12 14 3.9348 -0.5909 8.6811 13 1 5.2901 -1.1296 8.4014 14 1 3.9991 0.3343 9.8409 15 1 3.0114 -1.7113 8.9927 16 6 2.0322 -0.7103 -1.2305 17 6 2.3570 -2.0311 -1.1735 18 6 2.8234 -2.7045 -2.3006 19 6 2.9673 -2.0614 -3.4917 20 6 2.6421 -0.6981 -3.5893 21 6 2.7781 -0.0002 -4.8018 22 6 2.4539 1.3202 -4.8586 23 6 1.9883 1.9942 -3.7309 24 6 1.8435 1.3511 -2.5402 25 6 2.1682 -0.0128 -2.4426 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 2.9174 -1.1206 1.0285 30 1 2.7590 1.0461 2.1182 31 1 1.0873 0.6162 2.5525 32 1 1.9187 -1.3568 3.8029 33 1 3.5906 -0.9273 3.3688 34 1 3.3383 1.2430 4.5406 35 1 1.6662 0.8141 4.9749 36 1 3.1090 2.0709 8.1215 37 1 2.2513 -2.5650 -0.2407 38 1 3.0745 -3.7524 -2.2282 39 1 3.3342 -2.5952 -4.3559 40 1 3.1380 -0.5093 -5.6837 41 1 2.5588 1.8540 -5.7915 42 1 1.7384 3.0424 -3.8031 43 1 1.4812 1.8862 -1.6749 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131028640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:40 Heat of formation + Delta-G solvation = 23.583913 kcal Electronic energy + Delta-G solvation = -20963.604785 eV Core-core repulsion = 17972.383602 eV Total energy + Delta-G solvation = -2991.221182 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73159 -37.61367 -36.16063 -34.22783 -32.76488 -31.31547 -30.49001 -29.37387 -28.78067 -26.00371 -23.92125 -23.18428 -23.09198 -21.94729 -20.37290 -19.79684 -17.56161 -17.18297 -16.55063 -16.22193 -15.57057 -14.89547 -14.63680 -14.42071 -14.13902 -14.01202 -13.82188 -13.48489 -13.27536 -12.91896 -12.53558 -12.28585 -12.10205 -11.95309 -11.76080 -11.58443 -11.36826 -11.28072 -11.03336 -10.82181 -10.59703 -10.51213 -10.46560 -9.95632 -9.66700 -9.31743 -9.04697 -8.74730 -8.32066 -8.20914 -7.97810 -5.97405 -3.99456 0.37950 0.88043 1.89768 2.86396 3.35318 3.39306 3.42118 3.96323 4.24297 4.41390 4.49727 4.66832 4.69413 4.80912 4.89471 4.99923 5.19895 5.21113 5.26446 5.38300 5.38851 5.43555 5.62385 5.73305 5.76924 5.85438 5.88681 5.95804 6.02215 6.07438 6.13459 6.26192 6.30026 6.37772 6.40169 6.50376 6.67887 6.73820 6.81231 6.87988 7.15693 7.34945 7.61171 7.70706 7.86038 8.03099 8.46341 9.07586 9.64350 11.14059 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029095 B = 0.002779 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.137475 B =10073.609220 C =10528.421071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.120 3.880 3 H 0.053 0.947 4 N -0.685 5.685 5 C 0.058 3.942 6 C -0.106 4.106 7 C 0.023 3.977 8 C -0.519 4.519 9 H 0.054 0.946 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.070 4.070 17 C -0.107 4.107 18 C -0.110 4.110 19 C -0.116 4.116 20 C -0.052 4.052 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.104 4.104 25 C -0.045 4.045 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.340 0.660 30 H 0.025 0.975 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.013 0.987 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.137 0.863 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 -3.165 -25.755 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.010 3.990 3 H 0.071 0.929 4 N -0.317 5.317 5 C -0.070 4.070 6 C -0.144 4.144 7 C -0.015 4.015 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.071 4.071 17 C -0.125 4.125 18 C -0.128 4.128 19 C -0.134 4.134 20 C -0.052 4.052 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.139 4.139 24 C -0.122 4.122 25 C -0.045 4.045 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.158 0.842 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.155 0.845 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.005 -3.254 -25.447 25.830 hybrid contribution 1.159 0.146 0.618 1.322 sum -1.845 -3.108 -24.829 25.091 Atomic orbital electron populations 1.21766 0.93405 1.02672 1.01321 1.20426 0.96172 0.95440 0.86916 0.92924 1.60738 1.33316 1.33842 1.03816 1.22190 1.00581 0.93698 0.90518 1.21616 0.99275 0.99473 0.94075 1.19055 0.97091 0.94209 0.91152 1.21224 1.43596 0.96343 0.94585 0.92727 1.25032 0.95653 0.94887 0.98953 1.69960 1.48913 1.08981 1.25796 0.86655 0.79423 0.79615 0.82290 1.20274 1.21321 1.20217 1.19871 0.98676 0.94535 0.93986 1.20882 0.98239 0.94151 0.99232 1.20906 0.98943 1.00127 0.92789 1.20995 1.00849 0.93347 0.98230 1.18065 0.99779 0.94020 0.93308 1.21003 1.00268 0.94743 0.96641 1.20836 0.99536 0.94785 0.98546 1.20857 0.99949 1.00090 0.92961 1.21146 0.99315 0.93497 0.98275 1.17933 0.99806 0.93834 0.92944 0.92820 0.91831 0.91946 0.84158 0.95705 0.91329 0.92506 0.93692 0.96844 0.96587 0.92993 0.84505 0.85889 0.85815 0.85767 0.86159 0.86043 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 9.40 37.16 0.35 -1.27 16 2 C 0.12 1.55 2.23 -68.87 -0.15 1.39 16 3 H 0.05 0.69 6.36 -51.93 -0.33 0.36 16 4 N -0.69 -10.02 5.55 -107.96 -0.60 -10.61 16 5 C 0.06 1.01 5.48 -3.82 -0.02 0.99 16 6 C -0.11 -2.22 5.41 -26.74 -0.14 -2.36 16 7 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 8 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 9 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 12 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C -0.07 -0.86 4.94 -104.53 -0.52 -1.38 16 17 C -0.11 -1.24 8.79 -39.93 -0.35 -1.59 16 18 C -0.11 -1.11 9.95 -39.94 -0.40 -1.50 16 19 C -0.12 -1.15 9.77 -39.49 -0.39 -1.53 16 20 C -0.05 -0.57 5.74 -106.83 -0.61 -1.19 16 21 C -0.11 -1.01 9.77 -39.48 -0.39 -1.39 16 22 C -0.12 -1.04 9.95 -39.93 -0.40 -1.44 16 23 C -0.12 -1.13 9.95 -39.93 -0.40 -1.53 16 24 C -0.10 -1.14 9.19 -39.48 -0.36 -1.50 16 25 C -0.04 -0.54 5.74 -106.83 -0.61 -1.15 16 26 H 0.05 0.58 8.05 -51.93 -0.42 0.16 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.78 7.45 -51.93 -0.39 0.40 16 29 H 0.34 4.79 7.26 -39.29 -0.29 4.50 16 30 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16 31 H 0.07 1.21 7.44 -51.93 -0.39 0.82 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 37 H 0.14 1.56 6.90 -52.49 -0.36 1.20 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.13 1.29 6.49 -52.49 -0.34 0.95 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -31.10 350.60 -11.24 -42.33 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.70 Total: 1.40 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -4.94 Total: -28.74 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.14 Total: -37.19 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.10 -11.24 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131028640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.918 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds