Wall clock time and date at job start Tue Mar 31 2020 05:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00132 * 2 1 4 4 O 1.20819 * 119.99923 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99589 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46605 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47103 * 179.97438 * 6 5 3 8 8 C 1.50698 * 109.47460 * 180.02562 * 7 6 5 9 9 O 1.21296 * 119.99694 * 353.54512 * 8 7 6 10 10 N 1.34772 * 120.00340 * 173.53959 * 8 7 6 11 11 C 1.37102 * 120.00005 * 356.29413 * 10 8 7 12 12 H 1.08000 * 120.00072 * 232.08492 * 11 10 8 13 13 C 1.38947 * 119.99891 * 52.08117 * 11 10 8 14 14 N 1.31420 * 119.99839 * 26.91774 * 13 11 10 15 15 Si 1.86793 * 120.00235 * 206.91470 * 13 11 10 16 16 H 1.48508 * 109.47229 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47140 * 119.99915 * 15 13 11 18 18 H 1.48497 * 109.47634 * 240.00351 * 15 13 11 19 19 C 1.46500 * 120.00070 * 176.02010 * 10 8 7 20 20 C 1.54268 * 110.03187 * 237.90779 * 19 10 8 21 21 C 1.54967 * 104.15974 * 217.13991 * 20 19 10 22 22 C 1.54891 * 102.78110 * 37.88373 * 21 20 19 23 23 C 1.53880 * 110.03411 * 120.69101 * 19 10 8 24 24 H 1.09000 * 109.47632 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47384 * 300.00176 * 1 2 3 26 26 H 1.09001 * 109.47435 * 59.99984 * 1 2 3 27 27 H 1.09005 * 109.47427 * 60.00532 * 5 3 2 28 28 H 1.08993 * 109.47234 * 299.99750 * 5 3 2 29 29 H 1.09005 * 109.46969 * 60.00566 * 6 5 3 30 30 H 1.09000 * 109.47580 * 300.00380 * 6 5 3 31 31 H 1.09005 * 109.46674 * 60.00473 * 7 6 5 32 32 H 1.09000 * 109.47285 * 300.00649 * 7 6 5 33 33 H 0.97000 * 119.99590 * 184.88523 * 14 13 11 34 34 H 1.08998 * 110.02007 * 359.30187 * 19 10 8 35 35 H 1.09001 * 110.48296 * 335.78134 * 20 19 10 36 36 H 1.08998 * 110.48500 * 98.42648 * 20 19 10 37 37 H 1.09002 * 110.71759 * 279.57012 * 21 20 19 38 38 H 1.09003 * 110.92657 * 156.29615 * 21 20 19 39 39 H 1.08998 * 110.49020 * 203.40729 * 22 21 20 40 40 H 1.09001 * 110.59665 * 80.82105 * 22 21 20 41 41 H 1.09000 * 110.03267 * 238.57436 * 23 19 10 42 42 H 1.09007 * 110.03029 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0001 2.7420 -0.0002 7 6 5.5280 2.8220 0.0011 8 6 5.9554 4.2671 0.0009 9 8 5.1265 5.1446 -0.1181 10 7 7.2585 4.5845 0.1332 11 6 8.1865 3.5976 0.3440 12 1 8.8780 3.6741 1.1701 13 6 8.2372 2.4989 -0.5050 14 7 7.8235 2.6090 -1.7475 15 14 8.8935 0.8653 0.1195 16 1 9.2919 1.0037 1.5434 17 1 7.8366 -0.1709 0.0002 18 1 10.0733 0.4644 -0.6883 19 6 7.6842 5.9836 0.0458 20 6 8.7211 6.1508 -1.0841 21 6 9.7220 7.1954 -0.5286 22 6 9.8206 6.8127 0.9691 23 6 8.3827 6.4047 1.3507 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 3.9564 0.7805 -0.8892 28 1 3.9556 0.7808 0.8908 29 1 3.6101 3.2366 0.8894 30 1 3.6108 3.2356 -0.8906 31 1 5.9184 2.3273 -0.8883 32 1 5.9170 2.3285 0.8917 33 1 7.7922 1.8262 -2.3194 34 1 6.8227 6.6249 -0.1402 35 1 9.2267 5.2054 -1.2809 36 1 8.2421 6.5240 -1.9893 37 1 9.3290 8.2055 -0.6442 38 1 10.6926 7.1021 -1.0158 39 1 10.1440 7.6689 1.5611 40 1 10.5042 5.9749 1.1066 41 1 7.8605 7.2507 1.7975 42 1 8.4045 5.5681 2.0492 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164708143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:28 Heat of formation + Delta-G solvation = -139.165345 kcal Electronic energy + Delta-G solvation = -23098.921657 eV Core-core repulsion = 19657.501123 eV Total energy + Delta-G solvation = -3441.420534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.29933 -38.95043 -36.84188 -36.38460 -34.12944 -33.65663 -31.42932 -28.97988 -27.92188 -27.43583 -26.44604 -24.68682 -22.47300 -20.35734 -19.97017 -19.30494 -19.27443 -17.40459 -16.71205 -16.54740 -16.02015 -15.68947 -15.19993 -14.79284 -14.53332 -14.27832 -13.68722 -13.52640 -13.18263 -12.74655 -12.57189 -12.50548 -12.08114 -11.77363 -11.64749 -11.43918 -11.26151 -10.93731 -10.80109 -10.76872 -10.59592 -10.54025 -10.45882 -10.37123 -10.32754 -10.27097 -10.04200 -9.95029 -9.62372 -8.72607 -8.24873 -7.30959 -6.42419 -4.20558 2.38326 2.83588 3.07390 3.20588 3.23801 4.05839 4.16930 4.79682 4.81213 4.95408 5.05999 5.12155 5.36992 5.38133 5.40305 5.41119 5.47534 5.62623 5.80635 6.11053 6.17619 6.22287 6.25465 6.33563 6.36040 6.41270 6.47034 6.52639 6.55881 6.58006 6.75843 6.78606 6.95192 6.97156 7.13087 7.19293 7.34499 7.44710 7.90948 8.02284 8.65299 8.91659 9.63101 10.06739 10.58228 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019127 B = 0.004742 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.542271 B = 5903.181040 C = 6938.506976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.459 3.541 4 O -0.504 6.504 5 C -0.113 4.113 6 C -0.091 4.091 7 C -0.129 4.129 8 C 0.511 3.489 9 O -0.611 6.611 10 N -0.448 5.448 11 C -0.334 4.334 12 H 0.082 0.918 13 C 0.055 3.945 14 N -0.845 5.845 15 Si 0.890 3.110 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.282 1.282 19 C 0.132 3.868 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.127 4.127 24 H 0.097 0.903 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.268 0.732 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.198 -4.043 2.964 5.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.302 3.698 4 O -0.391 6.391 5 C -0.150 4.150 6 C -0.130 4.130 7 C -0.169 4.169 8 C 0.301 3.699 9 O -0.498 6.498 10 N -0.168 5.168 11 C -0.461 4.461 12 H 0.100 0.900 13 C -0.153 4.153 14 N -0.480 5.480 15 Si 0.716 3.284 16 H -0.190 1.190 17 H -0.200 1.200 18 H -0.208 1.208 19 C 0.027 3.973 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.165 4.165 24 H 0.116 0.884 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.779 -3.380 2.719 5.753 hybrid contribution 0.222 -0.964 0.076 0.992 sum -3.557 -4.344 2.795 6.271 Atomic orbital electron populations 1.23199 0.77023 1.03255 1.02434 1.86532 1.23006 1.34184 1.84524 1.24144 0.92617 0.80984 0.72022 1.90673 1.67260 1.36291 1.44827 1.21537 0.86191 1.01621 1.05681 1.21217 0.96334 0.91380 1.04033 1.21680 0.93267 0.96605 1.05324 1.20265 0.82155 0.90193 0.77260 1.90512 1.52232 1.50927 1.56081 1.43465 1.04808 1.04267 1.64245 1.19157 1.16723 0.99201 1.11062 0.90033 1.25474 0.96014 1.00449 0.93331 1.70183 1.44211 1.29950 1.03698 0.86474 0.79046 0.83108 0.79793 1.18990 1.20019 1.20807 1.21574 0.96323 0.86107 0.93257 1.22596 0.96421 0.99791 0.97056 1.22456 0.99081 0.98602 0.95964 1.22253 0.97355 0.99867 0.95909 1.22401 0.95153 1.00292 0.98670 0.88434 0.92082 0.92069 0.87711 0.87814 0.91471 0.90943 0.87251 0.90303 0.92129 0.90540 0.88988 0.93184 0.92618 0.92467 0.93043 0.91717 0.93016 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -4.99 10.56 -39.26 -0.41 -5.41 16 3 C 0.46 7.31 7.96 36.01 0.29 7.60 16 4 O -0.50 -9.55 15.73 -18.74 -0.29 -9.85 16 5 C -0.11 -1.72 5.81 -27.88 -0.16 -1.88 16 6 C -0.09 -1.78 3.82 -26.73 -0.10 -1.88 16 7 C -0.13 -2.79 3.86 -27.88 -0.11 -2.90 16 8 C 0.51 12.86 7.26 -10.99 -0.08 12.78 16 9 O -0.61 -16.84 15.34 5.54 0.09 -16.75 16 10 N -0.45 -10.85 2.37 -106.54 -0.25 -11.10 16 11 C -0.33 -7.94 6.79 -14.93 -0.10 -8.05 16 12 H 0.08 1.93 7.29 -52.49 -0.38 1.55 16 13 C 0.05 1.27 3.35 -17.47 -0.06 1.22 16 14 N -0.85 -20.85 11.58 55.50 0.64 -20.20 16 15 Si 0.89 18.00 29.63 -169.99 -5.04 12.96 16 16 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 C 0.13 2.90 3.29 -66.81 -0.22 2.68 16 20 C -0.12 -2.48 6.42 -25.03 -0.16 -2.64 16 21 C -0.12 -2.04 6.91 -24.70 -0.17 -2.21 16 22 C -0.12 -1.90 6.83 -25.07 -0.17 -2.07 16 23 C -0.13 -2.38 6.26 -25.61 -0.16 -2.54 16 24 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 30 H 0.07 1.55 7.99 -51.93 -0.41 1.14 16 31 H 0.11 2.47 5.46 -51.93 -0.28 2.19 16 32 H 0.08 1.61 7.75 -51.93 -0.40 1.21 16 33 H 0.27 6.24 8.32 -40.82 -0.34 5.90 16 34 H 0.08 1.81 6.95 -51.93 -0.36 1.45 16 35 H 0.09 2.14 7.02 -51.93 -0.36 1.77 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.40 6.95 -51.92 -0.36 1.04 16 LS Contribution 341.01 15.07 5.14 5.14 Total: -1.00 -29.26 341.01 -7.05 -36.31 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.78 Total: 7.37 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -0.14 Total: 1.54 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.39 Total: -31.31 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.62 Total: -32.01 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.04 Total: 12.96 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.26 -7.05 -36.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164708143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.857 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds