Wall clock time and date at job start Tue Mar 31 2020 05:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46986 * 300.00240 * 5 3 2 7 7 C 1.53005 * 109.47219 * 180.02562 * 6 5 3 8 8 C 1.52994 * 109.46906 * 59.99762 * 7 6 5 9 9 C 1.50700 * 109.46890 * 180.02562 * 8 7 6 10 10 O 1.21286 * 120.00144 * 119.99524 * 9 8 7 11 11 N 1.34777 * 119.99864 * 299.99796 * 9 8 7 12 12 C 1.46496 * 120.00097 * 359.97438 * 11 9 8 13 13 C 1.46507 * 120.00053 * 179.97438 * 11 9 8 14 14 C 1.50701 * 109.46708 * 89.99976 * 13 11 9 15 15 H 1.07996 * 120.00198 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99556 * 179.97438 * 14 13 11 17 17 N 1.31510 * 119.99976 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99793 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47220 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47214 * 120.00512 * 18 16 14 21 21 H 1.48505 * 109.47348 * 240.00113 * 18 16 14 22 22 C 1.52998 * 109.47366 * 299.99803 * 8 7 6 23 23 C 1.52992 * 109.47257 * 180.02562 * 5 3 2 24 24 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 25 25 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 27 27 H 1.08997 * 109.47392 * 59.99712 * 5 3 2 28 28 H 1.09005 * 109.46932 * 299.99942 * 6 5 3 29 29 H 1.08998 * 109.47453 * 59.99968 * 6 5 3 30 30 H 1.09000 * 109.46608 * 299.99989 * 7 6 5 31 31 H 1.08999 * 109.46783 * 179.97438 * 7 6 5 32 32 H 1.08992 * 109.47456 * 60.00368 * 8 7 6 33 33 H 1.09007 * 109.46995 * 89.99683 * 12 11 9 34 34 H 1.08995 * 109.47381 * 209.99816 * 12 11 9 35 35 H 1.08995 * 109.47452 * 330.00283 * 12 11 9 36 36 H 1.08996 * 109.47264 * 210.00240 * 13 11 9 37 37 H 1.09006 * 109.46658 * 330.00325 * 13 11 9 38 38 H 0.97006 * 120.00178 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47603 * 300.00663 * 22 8 7 40 40 H 1.08998 * 109.47444 * 180.02562 * 22 8 7 41 41 H 1.09004 * 109.47330 * 299.99977 * 23 5 3 42 42 H 1.09005 * 109.47124 * 59.99773 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1128 0.5816 1.2502 7 6 5.6408 0.6622 1.2512 8 6 6.0740 2.1295 1.2514 9 6 7.5789 2.2090 1.2517 10 8 8.1570 2.7654 0.3422 11 7 8.2823 1.6616 2.2626 12 6 7.5840 0.9900 3.3615 13 6 9.7454 1.7383 2.2627 14 6 10.1825 2.9936 2.9729 15 1 9.4444 3.6666 3.3835 16 6 11.5248 3.2822 3.0994 17 7 12.4236 2.4623 2.5998 18 14 12.0667 4.8377 3.9803 19 1 10.8710 5.5842 4.4472 20 1 12.9114 4.4770 5.1473 21 1 12.8487 5.6882 3.0473 22 6 5.5275 2.8229 0.0018 23 6 4.0001 2.7421 0.0011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.9564 0.7806 -0.8891 28 1 3.7227 1.0759 2.1399 29 1 3.8038 -0.4637 1.2503 30 1 6.0312 0.1682 0.3614 31 1 6.0300 0.1686 2.1416 32 1 5.6836 2.6235 2.1410 33 1 7.4574 -0.0655 3.1203 34 1 8.1688 1.0860 4.2762 35 1 6.6062 1.4495 3.5054 36 1 10.1548 0.8687 2.7767 37 1 10.1082 1.7572 1.2350 38 1 13.3680 2.6655 2.6884 39 1 5.9179 2.3289 -0.8880 40 1 5.8365 3.8681 0.0017 41 1 3.6107 3.2365 -0.8889 42 1 3.6100 3.2360 0.8911 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179478754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:17 Heat of formation + Delta-G solvation = -138.111480 kcal Electronic energy + Delta-G solvation = -22855.440212 eV Core-core repulsion = 19414.065377 eV Total energy + Delta-G solvation = -3441.374835 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.95254 -39.62824 -37.46319 -36.50306 -34.87911 -32.73606 -31.58131 -30.82916 -28.18558 -27.62146 -25.99982 -24.52683 -22.89302 -22.47906 -21.07963 -19.92487 -18.44245 -17.73830 -16.94130 -16.66285 -16.48310 -16.22148 -15.46939 -14.99117 -14.50830 -14.25172 -14.04303 -13.85426 -13.53716 -13.28488 -12.74382 -12.70899 -12.37826 -12.20415 -12.14672 -12.04248 -11.75392 -11.46044 -11.32065 -11.18733 -11.07764 -11.03625 -10.84857 -10.59538 -10.53534 -10.35981 -10.17105 -10.09737 -9.59267 -8.77565 -8.43328 -7.61653 -6.03838 -4.08423 1.98418 2.47507 3.30059 3.37350 3.40618 3.46990 3.96617 4.37496 4.46149 4.51715 4.56076 4.80025 4.87175 4.96330 5.08180 5.08816 5.19272 5.22594 5.28449 5.30930 5.40373 5.44172 5.62422 5.76928 5.84493 5.85074 5.87570 5.97707 6.06214 6.08260 6.15136 6.25688 6.38539 6.46827 7.07690 7.45688 7.52013 7.56273 7.92990 8.24539 8.44927 8.91744 9.12950 9.56878 11.04243 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.039904 B = 0.003274 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.510410 B = 8549.593767 C = 8767.678653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.508 6.508 5 C -0.080 4.080 6 C -0.106 4.106 7 C -0.121 4.121 8 C -0.110 4.110 9 C 0.508 3.492 10 O -0.542 6.542 11 N -0.602 5.602 12 C 0.082 3.918 13 C 0.244 3.756 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.097 4.097 23 C -0.102 4.102 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.262 0.738 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.553 -7.552 -2.303 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.308 3.692 4 O -0.395 6.395 5 C -0.099 4.099 6 C -0.144 4.144 7 C -0.158 4.158 8 C -0.131 4.131 9 C 0.294 3.706 10 O -0.419 6.419 11 N -0.334 5.334 12 C -0.062 4.062 13 C 0.125 3.875 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.134 4.134 23 C -0.140 4.140 24 H 0.080 0.920 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.257 -6.997 -2.788 22.552 hybrid contribution 0.127 0.880 0.607 1.077 sum -21.130 -6.117 -2.180 22.105 Atomic orbital electron populations 1.23254 0.76613 1.03612 1.02484 1.86529 1.23224 1.33712 1.84083 1.24019 0.92235 0.81155 0.71799 1.90661 1.67257 1.36412 1.45151 1.21220 0.86085 1.00197 1.02431 1.21531 0.96173 1.00880 0.95810 1.21803 0.94327 0.95484 1.04230 1.21370 0.93832 0.97406 1.00517 1.20296 0.88655 0.79100 0.82506 1.90662 1.71653 1.43284 1.36321 1.48137 1.09544 1.54708 1.21006 1.21773 0.97097 0.95886 0.91465 1.19285 0.72494 0.96938 0.98782 1.21478 0.91857 1.07015 1.36013 0.92455 1.24943 0.96506 0.96975 0.95762 1.69943 1.01154 1.36777 1.45567 0.86448 0.78599 0.83176 0.79233 1.19809 1.20981 1.20867 1.21318 0.92706 1.02010 0.97405 1.21485 0.96274 0.92652 1.03573 0.92006 0.88147 0.91944 0.87127 0.91222 0.90314 0.91034 0.89480 0.89023 0.93472 0.90979 0.92223 0.95071 0.93872 0.92787 0.90935 0.90431 0.90878 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.45 10.47 -39.27 -0.41 -3.87 16 3 C 0.46 5.10 7.26 36.01 0.26 5.36 16 4 O -0.51 -6.90 15.73 -18.75 -0.29 -7.19 16 5 C -0.08 -0.79 2.63 -91.77 -0.24 -1.03 16 6 C -0.11 -0.96 5.14 -26.73 -0.14 -1.10 16 7 C -0.12 -1.34 4.84 -26.73 -0.13 -1.47 16 8 C -0.11 -1.55 1.72 -91.78 -0.16 -1.71 16 9 C 0.51 10.30 7.07 -10.99 -0.08 10.22 16 10 O -0.54 -13.48 15.56 5.55 0.09 -13.40 16 11 N -0.60 -12.51 2.86 -182.95 -0.52 -13.04 16 12 C 0.08 1.24 8.80 59.84 0.53 1.77 16 13 C 0.24 6.38 5.16 -5.19 -0.03 6.35 16 14 C -0.52 -14.93 9.39 -34.44 -0.32 -15.26 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 18 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C -0.10 -1.30 4.49 -26.75 -0.12 -1.42 16 23 C -0.10 -1.14 4.49 -26.76 -0.12 -1.26 16 24 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 25 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 27 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.91 4.53 -51.93 -0.24 0.68 16 32 H 0.09 1.20 7.40 -51.93 -0.38 0.82 16 33 H 0.05 0.60 6.95 -51.93 -0.36 0.24 16 34 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 35 H 0.06 0.74 6.01 -51.93 -0.31 0.43 16 36 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 39 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 41 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 42 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -34.61 339.68 -6.58 -41.19 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.70 Total: -3.19 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 0.42 Total: 3.40 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.21 Total: -39.00 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.62 Total: -24.46 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.61 -6.58 -41.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179478754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.917 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds