Wall clock time and date at job start Tue Mar 31 2020 06:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47273 * 2 1 4 4 N 1.46902 * 109.47148 * 239.99852 * 2 1 3 5 5 C 1.46897 * 111.00049 * 85.00064 * 4 2 1 6 6 C 1.53000 * 109.47334 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47194 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47256 * 179.97438 * 7 6 5 9 9 H 1.08004 * 120.00041 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00394 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00296 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 119.99906 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47065 * 90.00518 * 12 10 8 14 14 H 1.48501 * 109.47230 * 210.00477 * 12 10 8 15 15 H 1.48504 * 109.47012 * 330.00613 * 12 10 8 16 16 C 1.50703 * 109.46952 * 119.99760 * 2 1 3 17 17 C 1.39373 * 119.50193 * 80.00179 * 16 2 1 18 18 C 1.36095 * 120.98824 * 179.97438 * 17 16 2 19 19 C 1.40546 * 119.65123 * 359.97438 * 18 17 16 20 20 C 1.40538 * 121.28195 * 180.02562 * 19 18 17 21 21 C 1.36099 * 119.65130 * 179.97438 * 20 19 18 22 22 C 1.39379 * 120.98764 * 359.97438 * 21 20 19 23 23 C 1.36085 * 120.98780 * 359.97438 * 22 21 20 24 24 C 1.40537 * 119.65749 * 0.02562 * 23 22 21 25 25 C 1.36086 * 119.50505 * 259.97484 * 16 2 1 26 26 H 1.09000 * 109.46631 * 60.00003 * 1 2 3 27 27 H 1.08998 * 109.47273 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46794 * 300.00152 * 1 2 3 29 29 H 1.00904 * 110.99873 * 321.04979 * 4 2 1 30 30 H 1.09004 * 109.46749 * 300.00071 * 5 4 2 31 31 H 1.08996 * 109.47080 * 59.99726 * 5 4 2 32 32 H 1.08997 * 109.46875 * 299.99925 * 6 5 4 33 33 H 1.09001 * 109.47020 * 59.99871 * 6 5 4 34 34 H 1.08997 * 109.47153 * 299.99761 * 7 6 5 35 35 H 1.09001 * 109.47236 * 60.00010 * 7 6 5 36 36 H 0.96997 * 119.99590 * 179.97438 * 11 10 8 37 37 H 1.07999 * 119.51069 * 0.02562 * 17 16 2 38 38 H 1.07998 * 120.17687 * 179.72646 * 18 17 16 39 39 H 1.07996 * 120.17519 * 359.97438 * 20 19 18 40 40 H 1.08000 * 119.50460 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.49947 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.17314 * 180.02562 * 23 22 21 43 43 H 1.07996 * 120.17534 * 0.04866 * 25 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5951 -0.5333 -3.5745 7 6 2.6599 0.4196 -4.7697 8 6 3.1653 -0.3246 -5.9787 9 1 3.4150 -1.3726 -5.9023 10 6 3.3091 0.3323 -7.1823 11 7 3.7498 -0.3174 -8.2375 12 14 2.8767 2.1447 -7.3147 13 1 4.0769 2.9636 -7.0080 14 1 2.4127 2.4435 -8.6933 15 1 1.7967 2.4678 -6.3479 16 6 2.0323 -0.7104 1.2305 17 6 2.0625 -2.1036 1.2545 18 6 2.5107 -2.7760 2.3496 19 6 2.9509 -2.0577 3.4746 20 6 3.4209 -2.7171 4.6233 21 6 3.8397 -1.9885 5.6939 22 6 3.8104 -0.5953 5.6694 23 6 3.3628 0.0770 4.5742 24 6 2.9222 -0.6411 3.4494 25 6 2.4501 0.0181 2.3014 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.4495 -1.4980 -1.4100 30 1 1.0871 0.6162 -2.5525 31 1 2.7589 1.0461 -2.1182 32 1 3.5904 -0.9273 -3.3691 33 1 1.9184 -1.3566 -3.8030 34 1 1.6644 0.8133 -4.9749 35 1 3.3364 1.2433 -4.5415 36 1 3.8505 0.1448 -9.0844 37 1 1.7261 -2.6579 0.3909 38 1 2.5243 -3.8559 2.3556 39 1 3.4496 -3.7961 4.6563 40 1 4.2008 -2.4976 6.5752 41 1 4.1481 -0.0411 6.5326 42 1 3.3462 1.1569 4.5693 43 1 2.4207 1.0972 2.2686 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182243714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:51 Heat of formation + Delta-G solvation = 23.371168 kcal Electronic energy + Delta-G solvation = -20649.436892 eV Core-core repulsion = 17658.206485 eV Total energy + Delta-G solvation = -2991.230408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.56422 -38.06494 -35.97108 -33.93899 -32.87791 -32.02951 -30.25957 -29.67684 -28.61855 -26.27294 -23.99844 -23.47107 -22.28645 -21.91678 -21.03133 -20.02072 -17.41402 -16.97725 -16.82527 -16.29981 -15.26827 -14.96455 -14.88563 -14.51623 -14.10150 -14.03878 -13.66050 -13.47577 -13.37083 -13.11834 -12.90560 -12.64929 -12.29228 -12.12782 -11.91238 -11.59930 -11.41936 -11.17691 -11.05404 -10.89704 -10.84319 -10.78090 -10.09098 -9.94781 -9.71992 -9.57224 -9.15766 -8.62493 -8.51863 -8.27707 -7.98547 -6.02175 -3.99847 0.41304 0.89441 1.93516 2.86118 3.31741 3.38790 3.42227 3.96853 4.24462 4.46755 4.47555 4.64203 4.69008 4.78580 4.91713 5.00789 5.05225 5.13429 5.24654 5.30295 5.31681 5.32431 5.53096 5.57937 5.61947 5.73003 5.78979 5.83952 5.92569 6.01774 6.10399 6.12878 6.18433 6.28414 6.44253 6.49798 6.57241 6.63236 6.69719 6.88584 6.93094 7.21073 7.35716 7.44831 7.54592 7.82340 8.57105 9.03471 9.60447 11.11419 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.031557 B = 0.002590 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.067707 B =10807.467482 C =10941.437140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.117 3.883 3 H 0.086 0.914 4 N -0.682 5.682 5 C 0.057 3.943 6 C -0.099 4.099 7 C -0.013 4.013 8 C -0.518 4.518 9 H 0.072 0.928 10 C 0.064 3.936 11 N -0.905 5.905 12 Si 0.881 3.119 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.266 1.266 16 C -0.052 4.052 17 C -0.088 4.088 18 C -0.112 4.112 19 C -0.055 4.055 20 C -0.105 4.105 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.106 4.106 24 C -0.048 4.048 25 C -0.110 4.110 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.340 0.660 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.013 0.987 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 -1.122 28.586 29.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.007 3.993 3 H 0.104 0.896 4 N -0.312 5.312 5 C -0.071 4.071 6 C -0.137 4.137 7 C -0.051 4.051 8 C -0.556 4.556 9 H 0.090 0.910 10 C -0.137 4.137 11 N -0.544 5.544 12 Si 0.708 3.292 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.191 1.191 16 C -0.053 4.053 17 C -0.106 4.106 18 C -0.130 4.130 19 C -0.055 4.055 20 C -0.123 4.123 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.124 4.124 24 C -0.048 4.048 25 C -0.129 4.129 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.158 0.842 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.075 -1.013 28.537 28.845 hybrid contribution -1.046 1.037 -0.457 1.542 sum -5.122 0.023 28.080 28.544 Atomic orbital electron populations 1.22482 0.96305 1.02459 1.02397 1.20524 0.92658 0.97488 0.88678 0.89624 1.60631 1.56835 1.10000 1.03740 1.22187 0.99091 0.95512 0.90333 1.21440 1.00881 0.98587 0.92826 1.19539 0.96332 0.95342 0.93853 1.21153 1.43422 0.98335 0.92722 0.91032 1.25050 0.94704 0.98127 0.95770 1.69923 1.46946 1.36602 1.00923 0.86762 0.79286 0.85935 0.77174 1.20307 1.21449 1.19104 1.19566 0.97338 0.93804 0.94545 1.20680 0.98390 0.93803 0.97724 1.21009 0.99535 0.99614 0.92860 1.18103 0.99918 0.92682 0.94818 1.21033 0.98747 0.99698 0.92821 1.20813 1.00558 0.94169 0.98639 1.20810 1.00302 0.94477 0.98395 1.21023 0.98913 0.99650 0.92838 1.18040 0.99551 0.92651 0.94604 1.20828 0.99892 0.99542 0.92622 0.91982 0.92209 0.92092 0.84202 0.95610 0.91465 0.91937 0.93035 0.96874 0.97074 0.92791 0.85787 0.85671 0.85766 0.86246 0.86234 0.85765 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.14 37.16 0.34 -1.44 16 2 C 0.12 1.35 2.76 -68.86 -0.19 1.16 16 3 H 0.09 1.00 7.61 -51.93 -0.40 0.60 16 4 N -0.68 -9.26 5.69 -107.95 -0.61 -9.87 16 5 C 0.06 0.91 5.48 -3.83 -0.02 0.89 16 6 C -0.10 -1.97 5.41 -26.73 -0.14 -2.11 16 7 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 8 C -0.52 -15.01 9.66 -34.44 -0.33 -15.34 16 9 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 10 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 11 N -0.90 -28.28 13.96 55.43 0.77 -27.50 16 12 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 16 C -0.05 -0.60 4.92 -104.97 -0.52 -1.12 16 17 C -0.09 -0.99 9.22 -39.93 -0.37 -1.35 16 18 C -0.11 -1.19 9.77 -39.48 -0.39 -1.58 16 19 C -0.06 -0.61 5.74 -106.83 -0.61 -1.23 16 20 C -0.11 -0.98 9.77 -39.48 -0.39 -1.36 16 21 C -0.12 -1.04 9.95 -39.93 -0.40 -1.44 16 22 C -0.12 -1.04 9.95 -39.93 -0.40 -1.43 16 23 C -0.11 -1.01 9.77 -39.49 -0.39 -1.40 16 24 C -0.05 -0.54 5.74 -106.83 -0.61 -1.16 16 25 C -0.11 -1.22 9.36 -39.48 -0.37 -1.59 16 26 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.34 4.28 7.77 -39.29 -0.31 3.98 16 30 H 0.03 0.40 7.44 -51.93 -0.39 0.01 16 31 H 0.07 1.08 8.05 -51.93 -0.42 0.66 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 35 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.12 1.29 7.18 -52.49 -0.38 0.91 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 1.15 8.00 -52.49 -0.42 0.73 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -31.89 351.43 -11.05 -42.94 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.85 Total: 0.96 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -4.99 Total: -29.11 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.16 Total: -37.38 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.89 -11.05 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182243714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.310 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds