Wall clock time and date at job start Tue Mar 31 2020 05:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37100 * 119.99788 * 2 1 4 4 H 1.08003 * 119.99761 * 142.82885 * 3 2 1 5 5 C 1.38944 * 119.99887 * 322.81649 * 3 2 1 6 6 N 1.31412 * 119.99679 * 158.41309 * 5 3 2 7 7 Si 1.86797 * 120.00250 * 338.41523 * 5 3 2 8 8 H 1.48497 * 109.47442 * 95.71972 * 7 5 3 9 9 H 1.48498 * 109.47166 * 215.72039 * 7 5 3 10 10 H 1.48498 * 109.46984 * 335.71715 * 7 5 3 11 11 C 1.34780 * 119.99920 * 179.97438 * 2 1 3 12 12 O 1.21293 * 119.99927 * 180.02562 * 11 2 1 13 13 C 1.50692 * 119.99772 * 0.02562 * 11 2 1 14 14 C 1.52998 * 109.46954 * 179.97438 * 13 11 2 15 15 C 1.53006 * 109.46623 * 184.99975 * 14 13 11 16 16 C 1.53015 * 109.46038 * 179.83892 * 15 14 13 17 17 C 1.52968 * 109.43392 * 59.79857 * 16 15 14 18 18 C 1.52954 * 109.81530 * 300.29687 * 17 16 15 19 19 C 1.53001 * 109.46391 * 64.95508 * 14 13 11 20 20 O 1.43707 * 109.40134 * 60.39482 * 17 16 15 21 21 C 1.44802 * 104.78624 * 95.50444 * 20 17 16 22 22 C 1.54914 * 101.72970 * 36.06279 * 21 20 17 23 23 O 1.43294 * 109.64888 * 179.71904 * 17 16 15 24 24 H 1.09002 * 109.47290 * 265.14075 * 1 2 3 25 25 H 1.09003 * 109.46742 * 25.14079 * 1 2 3 26 26 H 1.09003 * 109.47134 * 145.13847 * 1 2 3 27 27 H 0.97005 * 119.99986 * 180.02562 * 6 5 3 28 28 H 1.08997 * 109.47680 * 60.00235 * 13 11 2 29 29 H 1.09002 * 109.47591 * 299.99472 * 13 11 2 30 30 H 1.09000 * 109.45928 * 304.98011 * 14 13 11 31 31 H 1.08995 * 109.47343 * 299.83661 * 15 14 13 32 32 H 1.08996 * 109.46832 * 59.84106 * 15 14 13 33 33 H 1.09006 * 109.47704 * 179.78355 * 16 15 14 34 34 H 1.08998 * 109.48527 * 299.80822 * 16 15 14 35 35 H 1.09000 * 109.47653 * 299.69689 * 18 17 16 36 36 H 1.08997 * 109.47991 * 179.67583 * 18 17 16 37 37 H 1.08997 * 109.46878 * 300.15449 * 19 14 13 38 38 H 1.08998 * 109.46632 * 60.15220 * 19 14 13 39 39 H 1.09006 * 110.97168 * 277.95187 * 21 20 17 40 40 H 1.09001 * 111.00937 * 154.18921 * 21 20 17 41 41 H 1.08998 * 110.69644 * 206.08234 * 22 21 20 42 42 H 1.08993 * 110.69542 * 82.87519 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2824 0.5651 5 6 1.6675 2.2683 -0.7272 6 7 2.0433 3.4889 -0.4177 7 14 0.4841 1.9865 -2.1448 8 1 -0.9112 2.1584 -1.6665 9 1 0.7619 2.9679 -3.2241 10 1 0.6609 0.6091 -2.6708 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4722 0.0005 14 6 2.3796 -3.6352 0.0005 15 6 1.6186 -4.9566 -0.1252 16 6 2.6133 -6.1193 -0.1292 17 6 3.4140 -6.1086 1.1741 18 6 4.1721 -4.7867 1.3060 19 6 3.1750 -3.6258 1.3075 20 8 2.5169 -6.2579 2.2868 21 6 2.5291 -7.6751 2.5837 22 6 4.0062 -8.0441 2.2978 23 8 4.3427 -7.1998 1.1780 24 1 -0.3634 -0.0871 1.0240 25 1 -0.3633 0.9304 -0.4366 26 1 -0.3633 -0.8433 -0.5874 27 1 1.7059 4.2436 -0.9252 28 1 0.7591 -2.5302 -0.8897 29 1 0.7584 -2.5299 0.8903 30 1 3.0634 -3.5283 -0.8416 31 1 0.9365 -5.0648 0.7181 32 1 1.0502 -4.9614 -1.0552 33 1 2.0711 -7.0611 -0.2149 34 1 3.2933 -6.0131 -0.9744 35 1 4.8579 -4.6756 0.4661 36 1 4.7359 -4.7825 2.2388 37 1 3.7149 -2.6832 1.3974 38 1 2.4915 -3.7350 2.1495 39 1 1.8557 -8.2184 1.9207 40 1 2.2764 -7.8577 3.6282 41 1 4.0950 -9.0962 2.0272 42 1 4.6346 -7.8120 3.1576 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188391021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:41 Heat of formation + Delta-G solvation = -123.834814 kcal Electronic energy + Delta-G solvation = -23505.721713 eV Core-core repulsion = 20064.965960 eV Total energy + Delta-G solvation = -3440.755752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.94004 -38.94643 -36.93222 -35.07132 -34.68186 -32.16582 -31.65814 -30.73317 -29.10241 -26.67610 -26.16068 -24.15621 -23.42788 -22.65599 -21.28610 -19.53789 -18.55825 -17.25732 -17.00526 -16.86998 -15.98041 -15.59860 -15.44042 -15.22905 -14.68042 -14.22465 -13.97259 -13.63532 -13.39760 -12.99189 -12.97680 -12.64672 -12.56618 -12.49514 -12.31227 -12.03225 -11.94419 -11.63013 -11.46492 -11.26870 -10.94398 -10.71731 -10.51667 -10.41691 -10.32821 -10.23313 -10.05707 -9.88492 -9.37384 -8.98904 -8.35336 -7.66929 -6.35470 -3.91693 3.05263 3.24095 3.26277 3.28569 3.81638 3.85313 4.17981 4.35980 4.47803 4.61812 4.69093 4.79536 4.96700 4.98311 5.08431 5.22414 5.28636 5.29350 5.40876 5.53275 5.59009 5.61447 5.72262 5.76725 5.85248 5.91752 5.94659 6.04183 6.07441 6.14822 6.17020 6.31167 6.34472 6.36262 6.47268 6.81621 6.88023 7.04599 7.59885 8.34276 8.57364 9.03024 9.37712 9.85186 10.77025 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.041481 B = 0.003778 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.844352 B = 7409.249957 C = 7621.736919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.475 5.475 3 C -0.315 4.315 4 H 0.105 0.895 5 C 0.057 3.943 6 N -0.867 5.867 7 Si 0.881 3.119 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.265 1.265 11 C 0.464 3.536 12 O -0.562 6.562 13 C -0.132 4.132 14 C -0.069 4.069 15 C -0.109 4.109 16 C -0.132 4.132 17 C 0.258 3.742 18 C -0.114 4.114 19 C -0.113 4.113 20 O -0.362 6.362 21 C 0.013 3.987 22 C 0.020 3.980 23 O -0.381 6.381 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.273 0.727 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.499 -22.029 3.410 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.197 5.197 3 C -0.442 4.442 4 H 0.122 0.878 5 C -0.148 4.148 6 N -0.504 5.504 7 Si 0.709 3.291 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.190 1.190 11 C 0.253 3.747 12 O -0.444 6.444 13 C -0.172 4.172 14 C -0.088 4.088 15 C -0.147 4.147 16 C -0.170 4.170 17 C 0.181 3.819 18 C -0.152 4.152 19 C -0.150 4.150 20 O -0.283 6.283 21 C -0.064 4.064 22 C -0.056 4.056 23 O -0.302 6.302 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.846 -21.643 3.329 22.082 hybrid contribution -0.896 -0.138 -0.740 1.170 sum -3.741 -21.781 2.589 22.251 Atomic orbital electron populations 1.21977 0.83609 1.01415 1.00889 1.43723 1.03937 1.05885 1.66156 1.19064 1.10041 0.85630 1.29505 0.87781 1.25371 0.97497 0.94803 0.97156 1.69764 1.44112 0.98068 1.38441 0.86910 0.80180 0.78902 0.83132 1.20386 1.21564 1.18975 1.20301 0.88253 0.84764 0.81361 1.90506 1.13904 1.86924 1.53090 1.21679 0.98895 0.93947 1.02724 1.20884 0.96457 0.92144 0.99303 1.21543 0.97500 0.93541 1.02077 1.22055 0.98713 0.99379 0.96842 1.23475 0.82691 0.88490 0.87209 1.21815 0.98355 0.91973 1.03071 1.21643 0.97740 0.98787 0.96859 1.89313 1.65176 1.23026 1.50747 1.24341 0.96370 0.82853 1.02826 1.24150 0.95256 0.95996 0.90234 1.88893 1.55077 1.37622 1.48651 0.93124 0.91788 0.92769 0.91693 0.90340 0.90262 0.90480 0.91266 0.91703 0.91784 0.90285 0.90093 0.91356 0.88647 0.92131 0.90957 0.87634 0.88633 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.29 8.78 59.85 0.53 1.81 16 2 N -0.47 -11.65 2.59 -122.19 -0.32 -11.97 16 3 C -0.32 -9.10 9.37 -14.93 -0.14 -9.24 16 4 H 0.10 3.37 7.90 -52.48 -0.41 2.95 16 5 C 0.06 1.60 5.29 -17.47 -0.09 1.51 16 6 N -0.87 -25.50 13.96 55.50 0.77 -24.73 16 7 Si 0.88 20.86 24.96 -169.99 -4.24 16.62 16 8 H -0.28 -6.07 6.69 56.52 0.38 -5.69 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 C 0.46 10.72 7.34 -10.99 -0.08 10.64 16 12 O -0.56 -14.83 13.83 5.55 0.08 -14.75 16 13 C -0.13 -2.25 3.79 -27.89 -0.11 -2.35 16 14 C -0.07 -1.08 1.83 -90.62 -0.17 -1.25 16 15 C -0.11 -1.37 5.06 -26.72 -0.14 -1.50 16 16 C -0.13 -1.59 5.29 -26.74 -0.14 -1.73 16 17 C 0.26 3.35 1.03 -26.77 -0.03 3.32 16 18 C -0.11 -1.66 5.34 -26.74 -0.14 -1.81 16 19 C -0.11 -1.84 4.80 -26.72 -0.13 -1.97 16 20 O -0.36 -4.57 9.67 -59.04 -0.57 -5.15 16 21 C 0.01 0.11 7.91 38.17 0.30 0.41 16 22 C 0.02 0.18 8.08 38.17 0.31 0.49 16 23 O -0.38 -4.81 10.87 -59.04 -0.64 -5.45 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 1.35 3.42 -51.93 -0.18 1.17 16 26 H 0.05 0.89 6.64 -51.93 -0.34 0.55 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.08 1.20 7.41 -51.93 -0.38 0.82 16 29 H 0.08 1.22 8.11 -51.93 -0.42 0.80 16 30 H 0.08 1.33 7.96 -51.93 -0.41 0.91 16 31 H 0.07 0.87 7.69 -51.93 -0.40 0.47 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 1.87 5.94 -51.93 -0.31 1.56 16 38 H 0.06 0.97 7.69 -51.93 -0.40 0.57 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -33.02 323.18 -6.72 -39.74 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.65 Total: 2.49 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -0.02 Total: -1.67 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.46 Total: -36.70 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -1.14 Total: -25.35 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.24 Total: 16.62 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.02 -6.72 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188391021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.093 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds