Wall clock time and date at job start Tue Mar 31 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37100 * 119.99788 * 2 1 4 4 H 1.08003 * 119.99761 * 142.82885 * 3 2 1 5 5 C 1.38944 * 119.99887 * 322.81649 * 3 2 1 6 6 N 1.31412 * 119.99679 * 158.41309 * 5 3 2 7 7 Si 1.86797 * 120.00250 * 338.41523 * 5 3 2 8 8 H 1.48497 * 109.47442 * 95.71972 * 7 5 3 9 9 H 1.48498 * 109.47166 * 215.72039 * 7 5 3 10 10 H 1.48498 * 109.46984 * 335.71715 * 7 5 3 11 11 C 1.34780 * 119.99920 * 179.97438 * 2 1 3 12 12 O 1.21293 * 119.99927 * 180.02562 * 11 2 1 13 13 C 1.50692 * 119.99772 * 0.02562 * 11 2 1 14 14 C 1.52998 * 109.46954 * 179.97438 * 13 11 2 15 15 C 1.53006 * 109.46623 * 184.99975 * 14 13 11 16 16 C 1.53015 * 109.46038 * 179.83892 * 15 14 13 17 17 C 1.52968 * 109.43392 * 59.79857 * 16 15 14 18 18 C 1.52954 * 109.81530 * 300.29687 * 17 16 15 19 19 C 1.53001 * 109.46391 * 64.95508 * 14 13 11 20 20 O 1.43707 * 109.40134 * 60.39482 * 17 16 15 21 21 C 1.44802 * 104.78624 * 95.50444 * 20 17 16 22 22 C 1.54914 * 101.72970 * 36.06279 * 21 20 17 23 23 O 1.43294 * 109.64888 * 179.71904 * 17 16 15 24 24 H 1.09002 * 109.47290 * 265.14075 * 1 2 3 25 25 H 1.09003 * 109.46742 * 25.14079 * 1 2 3 26 26 H 1.09003 * 109.47134 * 145.13847 * 1 2 3 27 27 H 0.97005 * 119.99986 * 180.02562 * 6 5 3 28 28 H 1.08997 * 109.47680 * 60.00235 * 13 11 2 29 29 H 1.09002 * 109.47591 * 299.99472 * 13 11 2 30 30 H 1.09000 * 109.45928 * 304.98011 * 14 13 11 31 31 H 1.08995 * 109.47343 * 299.83661 * 15 14 13 32 32 H 1.08996 * 109.46832 * 59.84106 * 15 14 13 33 33 H 1.09006 * 109.47704 * 179.78355 * 16 15 14 34 34 H 1.08998 * 109.48527 * 299.80822 * 16 15 14 35 35 H 1.09000 * 109.47653 * 299.69689 * 18 17 16 36 36 H 1.08997 * 109.47991 * 179.67583 * 18 17 16 37 37 H 1.08997 * 109.46878 * 300.15449 * 19 14 13 38 38 H 1.08998 * 109.46632 * 60.15220 * 19 14 13 39 39 H 1.09006 * 110.97168 * 277.95187 * 21 20 17 40 40 H 1.09001 * 111.00937 * 154.18921 * 21 20 17 41 41 H 1.08998 * 110.69644 * 206.08234 * 22 21 20 42 42 H 1.08993 * 110.69542 * 82.87519 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2824 0.5651 5 6 1.6675 2.2683 -0.7272 6 7 2.0433 3.4889 -0.4177 7 14 0.4841 1.9865 -2.1448 8 1 -0.9112 2.1584 -1.6665 9 1 0.7619 2.9679 -3.2241 10 1 0.6609 0.6091 -2.6708 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4722 0.0005 14 6 2.3796 -3.6352 0.0005 15 6 1.6186 -4.9566 -0.1252 16 6 2.6133 -6.1193 -0.1292 17 6 3.4140 -6.1086 1.1741 18 6 4.1721 -4.7867 1.3060 19 6 3.1750 -3.6258 1.3075 20 8 2.5169 -6.2579 2.2868 21 6 2.5291 -7.6751 2.5837 22 6 4.0062 -8.0441 2.2978 23 8 4.3427 -7.1998 1.1780 24 1 -0.3634 -0.0871 1.0240 25 1 -0.3633 0.9304 -0.4366 26 1 -0.3633 -0.8433 -0.5874 27 1 1.7059 4.2436 -0.9252 28 1 0.7591 -2.5302 -0.8897 29 1 0.7584 -2.5299 0.8903 30 1 3.0634 -3.5283 -0.8416 31 1 0.9365 -5.0648 0.7181 32 1 1.0502 -4.9614 -1.0552 33 1 2.0711 -7.0611 -0.2149 34 1 3.2933 -6.0131 -0.9744 35 1 4.8579 -4.6756 0.4661 36 1 4.7359 -4.7825 2.2388 37 1 3.7149 -2.6832 1.3974 38 1 2.4915 -3.7350 2.1495 39 1 1.8557 -8.2184 1.9207 40 1 2.2764 -7.8577 3.6282 41 1 4.0950 -9.0962 2.0272 42 1 4.6346 -7.8120 3.1576 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188391021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:40 Heat of formation + Delta-G solvation = -146.941375 kcal Electronic energy + Delta-G solvation = -23506.723688 eV Core-core repulsion = 20064.965960 eV Total energy + Delta-G solvation = -3441.757728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.86078 -40.62634 -38.19189 -36.57955 -35.92933 -34.15575 -32.94093 -31.82005 -30.05811 -28.30257 -27.66121 -25.84496 -24.22835 -23.70907 -22.49001 -20.67695 -20.29740 -19.01800 -18.08662 -17.90336 -17.63467 -17.20303 -16.51806 -16.33724 -16.07663 -15.65901 -15.13624 -14.82628 -14.62723 -14.50739 -14.32558 -13.97947 -13.94004 -13.86757 -13.59078 -13.37000 -13.16926 -12.86359 -12.76368 -12.56075 -12.32011 -12.20894 -12.09122 -11.81685 -11.61601 -11.51511 -11.25685 -11.07388 -11.01501 -10.41558 -10.14609 -9.64672 -8.50571 -6.12641 1.20566 1.33751 1.46412 2.02448 2.19139 2.47908 2.78941 2.97170 2.98476 3.64569 3.71671 3.75953 3.88056 3.96421 4.07785 4.19146 4.26641 4.33307 4.39418 4.47722 4.50935 4.53842 4.56958 4.63418 4.70991 4.73291 4.83988 4.86139 4.89795 5.00996 5.04992 5.07097 5.11096 5.21551 5.28768 5.53433 5.56085 5.60084 6.05021 6.19406 6.60037 6.98099 7.34922 7.94739 8.67406 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.041481 B = 0.003778 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.844352 B = 7409.249957 C = 7621.736919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.491 5.491 3 C -0.337 4.337 4 H 0.039 0.961 5 C 0.006 3.994 6 N -0.916 5.916 7 Si 0.959 3.041 8 H -0.239 1.239 9 H -0.292 1.292 10 H -0.256 1.256 11 C 0.455 3.545 12 O -0.609 6.609 13 C -0.120 4.120 14 C -0.067 4.067 15 C -0.098 4.098 16 C -0.130 4.130 17 C 0.262 3.738 18 C -0.115 4.115 19 C -0.106 4.106 20 O -0.382 6.382 21 C 0.010 3.990 22 C 0.012 3.988 23 O -0.401 6.401 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.279 0.721 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.069 -25.232 2.364 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.213 5.213 3 C -0.465 4.465 4 H 0.057 0.943 5 C -0.195 4.195 6 N -0.554 5.554 7 Si 0.782 3.218 8 H -0.163 1.163 9 H -0.219 1.219 10 H -0.180 1.180 11 C 0.246 3.754 12 O -0.494 6.494 13 C -0.159 4.159 14 C -0.086 4.086 15 C -0.135 4.135 16 C -0.168 4.168 17 C 0.185 3.815 18 C -0.153 4.153 19 C -0.144 4.144 20 O -0.303 6.303 21 C -0.066 4.066 22 C -0.063 4.063 23 O -0.323 6.323 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.445 -24.871 2.311 25.796 hybrid contribution 0.371 0.831 -0.259 0.947 sum -6.074 -24.039 2.052 24.880 Atomic orbital electron populations 1.22233 0.80225 1.02736 1.03235 1.43894 1.06039 1.04711 1.66684 1.18672 1.09244 0.88398 1.30193 0.94300 1.26242 1.00058 0.93799 0.99447 1.69891 1.46390 0.99294 1.39851 0.85692 0.79169 0.78873 0.78075 1.16327 1.21944 1.17997 1.21496 0.88175 0.86469 0.79300 1.90492 1.16521 1.87906 1.54485 1.21704 0.98847 0.90007 1.05365 1.20872 0.96194 0.93906 0.97672 1.21462 0.97248 0.91167 1.03617 1.22046 0.98589 1.00251 0.95921 1.23273 0.82744 0.87392 0.88095 1.21756 0.98103 0.93185 1.02278 1.21479 0.97857 0.97278 0.97780 1.89279 1.64798 1.25616 1.50578 1.24630 0.96400 0.80898 1.04684 1.24435 0.95603 0.96873 0.89409 1.88873 1.55485 1.37870 1.50053 0.90930 0.92822 0.88267 0.91119 0.87087 0.87645 0.92698 0.90383 0.89380 0.89502 0.90821 0.91284 0.91973 0.93163 0.91779 0.89201 0.85431 0.85881 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.10 8.78 127.77 1.12 3.23 16 2 N -0.49 -24.09 2.59 -658.89 -1.70 -25.79 16 3 C -0.34 -20.42 9.37 84.04 0.79 -19.63 16 4 H 0.04 2.77 7.90 -2.91 -0.02 2.75 16 5 C 0.01 0.34 5.29 84.92 0.45 0.79 16 6 N -0.92 -55.95 13.96 21.66 0.30 -55.65 16 7 Si 0.96 42.39 24.96 68.60 1.71 44.10 16 8 H -0.24 -9.09 6.69 99.48 0.67 -8.42 16 9 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 10 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 11 C 0.45 21.18 7.34 87.65 0.64 21.82 16 12 O -0.61 -34.08 13.83 -3.07 -0.04 -34.12 16 13 C -0.12 -3.75 3.79 29.84 0.11 -3.64 16 14 C -0.07 -2.03 1.83 -10.79 -0.02 -2.05 16 15 C -0.10 -2.10 5.06 30.60 0.15 -1.95 16 16 C -0.13 -2.78 5.29 30.59 0.16 -2.62 16 17 C 0.26 6.41 1.03 30.57 0.03 6.44 16 18 C -0.12 -3.45 5.34 30.59 0.16 -3.28 16 19 C -0.11 -3.55 4.80 30.60 0.15 -3.41 16 20 O -0.38 -8.73 9.67 -126.22 -1.22 -9.95 16 21 C 0.01 0.13 7.91 72.64 0.57 0.71 16 22 C 0.01 0.19 8.08 72.64 0.59 0.77 16 23 O -0.40 -9.50 10.87 -126.22 -1.37 -10.88 16 24 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.05 2.07 3.42 -2.39 -0.01 2.06 16 26 H 0.10 2.71 6.64 -2.39 -0.02 2.69 16 27 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 28 H 0.11 2.82 7.41 -2.39 -0.02 2.81 16 29 H 0.11 2.82 8.11 -2.39 -0.02 2.80 16 30 H 0.05 1.89 7.96 -2.39 -0.02 1.88 16 31 H 0.08 1.60 7.69 -2.39 -0.02 1.58 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 2.12 5.94 -2.39 -0.01 2.11 16 38 H 0.06 2.05 7.69 -2.39 -0.02 2.03 16 39 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -78.87 323.18 3.55 -75.32 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.96 Total: 19.78 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 4.92 Total: -2.81 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -1.40 Total: -81.44 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -2.63 Total: -54.95 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.71 Total: 44.10 kcal Total: -78.87 3.55 -75.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188391021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.624 kcal (2) G-P(sol) polarization free energy of solvation -78.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds