Wall clock time and date at job start Tue Mar 31 2020 06:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46835 * 2 1 4 4 C 1.42901 * 114.00117 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46554 * 30.00415 * 4 3 2 6 6 C 1.53002 * 109.47443 * 270.00435 * 4 3 2 7 7 C 1.50693 * 109.47218 * 149.99988 * 4 3 2 8 8 N 1.29955 * 126.28599 * 45.03180 * 7 4 3 9 9 O 1.21307 * 110.25028 * 179.97438 * 8 7 4 10 10 C 1.33641 * 109.80910 * 0.02562 * 9 8 7 11 11 C 1.50699 * 126.54761 * 179.97438 * 10 9 8 12 12 N 1.46906 * 109.47140 * 270.02094 * 11 10 9 13 13 C 1.46900 * 110.99728 * 66.04805 * 12 11 10 14 14 C 1.46905 * 111.00051 * 189.99841 * 12 11 10 15 15 H 1.09002 * 109.46483 * 55.00005 * 14 12 11 16 16 C 1.52995 * 109.47200 * 295.00351 * 14 12 11 17 17 C 1.50697 * 109.46827 * 175.00101 * 14 12 11 18 18 H 1.08000 * 120.00189 * 0.02562 * 17 14 12 19 19 C 1.37882 * 119.99554 * 180.02562 * 17 14 12 20 20 N 1.31516 * 120.00095 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99601 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.46939 * 90.00052 * 21 19 17 23 23 H 1.48504 * 109.47023 * 209.99654 * 21 19 17 24 24 H 1.48497 * 109.47541 * 330.00124 * 21 19 17 25 25 N 1.31128 * 106.90066 * 0.22301 * 10 9 8 26 26 H 1.08995 * 109.47233 * 59.99838 * 1 2 3 27 27 H 1.08993 * 109.46729 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46653 * 299.99653 * 1 2 3 29 29 H 1.08999 * 109.46918 * 240.01058 * 2 1 3 30 30 H 1.08993 * 109.47728 * 120.00040 * 2 1 3 31 31 H 1.08997 * 109.46746 * 300.00158 * 6 4 3 32 32 H 1.09008 * 109.46610 * 59.99621 * 6 4 3 33 33 H 1.08997 * 109.47290 * 179.97438 * 6 4 3 34 34 H 1.09004 * 109.47103 * 150.02195 * 11 10 9 35 35 H 1.09000 * 109.47247 * 30.02073 * 11 10 9 36 36 H 1.08996 * 109.47030 * 59.99921 * 13 12 11 37 37 H 1.08999 * 109.46702 * 180.02562 * 13 12 11 38 38 H 1.08996 * 109.46890 * 299.99929 * 13 12 11 39 39 H 1.08999 * 109.47343 * 59.99642 * 16 14 12 40 40 H 1.09001 * 109.47209 * 180.02562 * 16 14 12 41 41 H 1.09002 * 109.46927 * 300.00025 * 16 14 12 42 42 H 0.96999 * 119.99537 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5148 6 6 3.9400 1.5002 1.4417 7 6 3.8341 2.7266 -0.7109 8 7 3.2981 3.9001 -0.5546 9 8 3.8477 4.7113 -1.2698 10 6 4.8154 4.1140 -1.9719 11 6 5.7320 4.7682 -2.9733 12 7 5.1244 4.7027 -4.3092 13 6 3.9019 5.5147 -4.3719 14 6 6.0828 5.1133 -5.3441 15 1 6.9860 4.5086 -5.2632 16 6 6.4383 6.5891 -5.1533 17 6 5.4668 4.9168 -6.7054 18 1 4.4637 4.5264 -6.7930 19 6 6.1840 5.2355 -7.8390 20 7 7.4058 5.7104 -7.7324 21 14 5.4208 4.9913 -9.5264 22 1 4.7073 6.2293 -9.9308 23 1 6.4885 4.6904 -10.5138 24 1 4.4599 3.8602 -9.4762 25 7 4.8113 2.8489 -1.6269 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5137 -0.8901 30 1 1.8935 -0.5138 0.8899 31 1 3.5076 2.3586 1.9559 32 1 3.6482 0.5841 1.9554 33 1 5.0266 1.5859 1.4412 34 1 6.6896 4.2476 -2.9837 35 1 5.8883 5.8107 -2.6960 36 1 4.1440 6.5537 -4.1486 37 1 3.4723 5.4480 -5.3714 38 1 3.1820 5.1445 -3.6420 39 1 6.8837 6.7312 -4.1687 40 1 7.1490 6.8939 -5.9215 41 1 5.5350 7.1938 -5.2341 42 1 7.9102 5.9349 -8.5299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247699730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:57 Heat of formation + Delta-G solvation = 29.454856 kcal Electronic energy + Delta-G solvation = -22605.633667 eV Core-core repulsion = 19203.817804 eV Total energy + Delta-G solvation = -3401.815862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.35998 -38.72565 -37.53028 -35.66173 -33.57257 -32.63204 -31.52168 -30.21693 -28.94622 -27.48818 -25.27418 -25.08695 -24.41368 -23.01108 -22.75584 -20.87390 -19.46235 -17.87951 -17.37337 -16.99244 -16.24852 -15.91419 -15.49972 -15.29475 -14.59357 -14.28906 -13.90151 -13.70003 -13.45532 -12.96087 -12.88889 -12.79238 -12.30743 -12.28203 -12.01937 -11.79170 -11.63603 -11.42451 -11.23073 -11.21135 -11.14000 -10.88216 -10.79245 -10.77031 -10.58377 -10.12070 -10.05656 -9.93599 -9.69579 -8.98077 -8.45379 -7.42114 -6.07621 -4.11549 1.36728 2.31946 3.05006 3.16694 3.28725 3.35745 3.40241 3.90088 4.28372 4.38016 4.65484 4.74742 4.87476 4.93029 4.98457 5.09619 5.19875 5.25190 5.30208 5.42986 5.52613 5.63192 5.65324 5.74385 5.85847 5.89132 5.95107 6.03938 6.18379 6.27234 6.55765 6.71376 6.79643 6.89216 6.96187 7.28345 7.58735 7.71751 7.94426 8.22491 8.39031 8.42182 8.93059 9.53632 10.99575 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.003517 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.109889 B = 7958.607138 C = 8633.110932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.184 3.816 5 H 0.092 0.908 6 C -0.167 4.167 7 C 0.160 3.840 8 N -0.367 5.367 9 O 0.074 5.926 10 C 0.211 3.789 11 C 0.139 3.861 12 N -0.527 5.527 13 C 0.028 3.972 14 C 0.214 3.786 15 H 0.046 0.954 16 C -0.177 4.177 17 C -0.502 4.502 18 H 0.064 0.936 19 C 0.060 3.940 20 N -0.893 5.893 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 N -0.470 5.470 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.010 0.990 40 H 0.092 0.908 41 H 0.034 0.966 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.596 -7.185 15.657 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.292 6.292 4 C 0.125 3.875 5 H 0.110 0.890 6 C -0.225 4.225 7 C -0.113 4.113 8 N -0.075 5.075 9 O 0.014 5.986 10 C -0.010 4.010 11 C 0.009 3.991 12 N -0.252 5.252 13 C -0.120 4.120 14 C 0.109 3.891 15 H 0.064 0.936 16 C -0.236 4.236 17 C -0.541 4.541 18 H 0.082 0.918 19 C -0.141 4.141 20 N -0.532 5.532 21 Si 0.726 3.274 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.198 1.198 25 N -0.204 5.204 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.029 0.971 40 H 0.111 0.889 41 H 0.053 0.947 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.239 -7.758 15.993 19.193 hybrid contribution 0.077 0.646 -0.935 1.138 sum -7.162 -7.112 15.058 18.128 Atomic orbital electron populations 1.21736 0.93428 1.02281 1.03351 1.22589 0.95880 0.83211 1.00374 1.88002 1.19204 1.27003 1.95011 1.19894 0.82363 0.90684 0.94595 0.88966 1.22242 1.01975 1.03446 0.94850 1.25423 0.93427 0.95385 0.97097 1.74602 1.18128 1.01154 1.13612 1.85326 1.37186 1.35830 1.40237 1.29098 0.90248 0.87316 0.94317 1.20657 0.93278 0.98391 0.86800 1.62433 1.07510 1.55054 1.00253 1.22349 0.92192 0.94832 1.02651 1.19388 0.90513 0.91070 0.88178 0.93601 1.22463 1.01424 1.00589 0.99094 1.21060 1.01261 1.42427 0.89335 0.91785 1.24903 0.94866 0.95122 0.99219 1.69872 1.10006 1.44197 1.29142 0.86493 0.78855 0.78501 0.83558 1.20762 1.21236 1.19818 1.71868 1.20335 1.15795 1.12410 0.91689 0.90929 0.91802 0.92889 0.93043 0.91199 0.91081 0.90898 0.86718 0.91449 0.95488 0.89858 0.94291 0.97112 0.88944 0.94725 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.06 0.53 6.47 37.16 0.24 0.77 16 3 O -0.37 -5.00 9.97 -35.23 -0.35 -5.35 16 4 C 0.18 2.37 3.27 -27.88 -0.09 2.28 16 5 H 0.09 1.06 7.79 -51.93 -0.40 0.66 16 6 C -0.17 -1.69 9.51 37.16 0.35 -1.33 16 7 C 0.16 2.63 7.10 -156.37 -1.11 1.52 16 8 N -0.37 -6.41 12.16 30.91 0.38 -6.03 16 9 O 0.07 1.27 10.73 18.11 0.19 1.46 16 10 C 0.21 3.64 7.07 -13.06 -0.09 3.54 16 11 C 0.14 2.38 5.03 -4.97 -0.03 2.35 16 12 N -0.53 -10.85 4.73 -237.73 -1.13 -11.98 16 13 C 0.03 0.54 8.60 60.06 0.52 1.06 16 14 C 0.21 5.04 2.34 -68.87 -0.16 4.88 16 15 H 0.05 1.17 8.03 -51.93 -0.42 0.76 16 16 C -0.18 -3.93 8.28 37.15 0.31 -3.62 16 17 C -0.50 -13.19 7.89 -34.44 -0.27 -13.46 16 18 H 0.06 1.70 6.77 -52.49 -0.36 1.35 16 19 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 20 N -0.89 -24.42 11.32 55.43 0.63 -23.79 16 21 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 N -0.47 -8.30 11.55 -9.86 -0.11 -8.41 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.05 0.39 7.87 -51.93 -0.41 -0.02 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.55 7.87 -51.92 -0.41 0.14 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 1.88 8.00 -51.93 -0.42 1.46 16 35 H 0.07 1.04 6.94 -51.93 -0.36 0.68 16 36 H 0.03 0.49 6.51 -51.93 -0.34 0.15 16 37 H 0.08 1.72 6.41 -51.93 -0.33 1.38 16 38 H 0.04 0.71 6.83 -51.93 -0.35 0.35 16 39 H 0.01 0.20 6.75 -51.93 -0.35 -0.15 16 40 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 41 H 0.03 0.75 6.47 -51.93 -0.34 0.41 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 341.87 15.07 5.15 5.15 Total: -1.00 -29.31 341.87 -6.77 -36.08 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.47 Total: -1.57 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.05 Total: -1.38 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.24 Total: -50.21 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.16 Total: -3.89 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.31 -6.77 -36.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247699730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.536 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds