Wall clock time and date at job start Tue Mar 31 2020 06:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.46952 * 2 1 4 4 C 1.42901 * 113.99714 * 180.02562 * 3 2 1 5 5 H 1.08992 * 109.47337 * 330.00029 * 4 3 2 6 6 C 1.53000 * 109.46962 * 90.00312 * 4 3 2 7 7 C 1.50698 * 109.47070 * 210.00105 * 4 3 2 8 8 N 1.29954 * 126.28767 * 315.02771 * 7 4 3 9 9 O 1.21303 * 110.25238 * 179.97438 * 8 7 4 10 10 C 1.33643 * 109.80769 * 0.02562 * 9 8 7 11 11 C 1.50703 * 126.54803 * 179.73780 * 10 9 8 12 12 N 1.46900 * 109.46945 * 270.01639 * 11 10 9 13 13 C 1.46908 * 110.99652 * 66.04881 * 12 11 10 14 14 C 1.46900 * 111.00013 * 189.99992 * 12 11 10 15 15 H 1.08992 * 109.47373 * 55.00140 * 14 12 11 16 16 C 1.53000 * 109.47328 * 295.00108 * 14 12 11 17 17 C 1.50704 * 109.47082 * 175.00734 * 14 12 11 18 18 H 1.07995 * 120.00447 * 114.93016 * 17 14 12 19 19 C 1.37883 * 119.99557 * 294.92790 * 17 14 12 20 20 N 1.31512 * 119.99782 * 179.97438 * 19 17 14 21 21 Si 1.86800 * 119.99976 * 359.95446 * 19 17 14 22 22 H 1.48500 * 109.46826 * 84.86996 * 21 19 17 23 23 H 1.48500 * 109.47315 * 204.86688 * 21 19 17 24 24 H 1.48498 * 109.47428 * 324.86798 * 21 19 17 25 25 N 1.31127 * 106.90005 * 359.97438 * 10 9 8 26 26 H 1.08997 * 109.47294 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47110 * 299.99743 * 1 2 3 28 28 H 1.08998 * 109.47648 * 59.99588 * 1 2 3 29 29 H 1.08999 * 109.46655 * 240.00532 * 2 1 3 30 30 H 1.08990 * 109.47363 * 120.00451 * 2 1 3 31 31 H 1.08996 * 109.47626 * 299.99853 * 6 4 3 32 32 H 1.09006 * 109.47114 * 59.99742 * 6 4 3 33 33 H 1.09002 * 109.46976 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.47314 * 30.01624 * 11 10 9 35 35 H 1.09002 * 109.47222 * 150.01826 * 11 10 9 36 36 H 1.09000 * 109.47378 * 60.00004 * 13 12 11 37 37 H 1.09004 * 109.46640 * 179.97438 * 13 12 11 38 38 H 1.08997 * 109.47116 * 299.99475 * 13 12 11 39 39 H 1.09000 * 109.47309 * 175.22162 * 16 14 12 40 40 H 1.09002 * 109.47582 * 295.22761 * 16 14 12 41 41 H 1.09003 * 109.47242 * 55.22167 * 16 14 12 42 42 H 0.97002 * 119.99835 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8635 0.6016 0.5129 6 6 3.9385 1.5007 -1.4433 7 6 3.8347 2.7263 0.7099 8 7 3.2980 3.8997 0.5552 9 8 3.8478 4.7104 1.2706 10 6 4.8171 4.1132 1.9704 11 6 5.7386 4.7682 2.9669 12 7 6.9396 5.2562 2.2760 13 6 6.6060 6.3408 1.3430 14 6 7.9627 5.6859 3.2387 15 1 8.1775 4.8703 3.9290 16 6 7.4495 6.8955 4.0225 17 6 9.2207 6.0633 2.4998 18 1 9.5698 7.0852 2.5145 19 6 9.9261 5.1037 1.8049 20 7 11.0237 5.4331 1.1596 21 14 9.3231 3.3359 1.7805 22 1 8.3127 3.1725 0.7046 23 1 10.4685 2.4256 1.5263 24 1 8.7087 3.0043 3.0911 25 7 4.8166 2.8494 1.6206 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8898 31 1 3.6464 0.5849 -1.9572 32 1 3.5058 2.3593 -1.9568 33 1 5.0251 1.5872 -1.4438 34 1 5.2259 5.6058 3.4399 35 1 6.0266 4.0422 3.7273 36 1 6.1586 7.1687 1.8932 37 1 7.5132 6.6838 0.8454 38 1 5.8989 5.9750 0.5985 39 1 8.1721 7.1619 4.7938 40 1 7.3151 7.7379 3.3439 41 1 6.4954 6.6486 4.4882 42 1 11.5198 4.7581 0.6705 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247699731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:01 Heat of formation + Delta-G solvation = 29.828669 kcal Electronic energy + Delta-G solvation = -23064.194732 eV Core-core repulsion = 19662.395079 eV Total energy + Delta-G solvation = -3401.799652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.36489 -38.74226 -37.70719 -35.67222 -33.49912 -32.43923 -31.60007 -30.24816 -29.71610 -27.50445 -25.61418 -25.08848 -24.31063 -23.04911 -22.67067 -20.79161 -19.31395 -17.95924 -17.37223 -17.01797 -16.78120 -15.93393 -15.50730 -15.21146 -14.76906 -14.23573 -13.92706 -13.67425 -13.45976 -13.06537 -12.96059 -12.82611 -12.42486 -12.27884 -12.14816 -11.97181 -11.78184 -11.52824 -11.36527 -11.22786 -11.18601 -11.13981 -10.81444 -10.69730 -10.48131 -10.05550 -10.00583 -9.77113 -9.67205 -9.15293 -8.59123 -7.51284 -6.08801 -4.16833 1.35620 2.33008 3.04325 3.10621 3.51806 3.56023 3.70118 3.91715 4.26909 4.56582 4.65349 4.71028 4.74335 4.88626 4.96454 5.05253 5.23465 5.27837 5.39529 5.44638 5.49819 5.59598 5.62466 5.69887 5.81853 5.89770 5.96799 5.98927 6.14145 6.15339 6.21015 6.24156 6.39404 6.67738 6.86809 6.90951 7.09422 7.51427 7.80617 7.98241 8.38552 8.47895 8.91328 9.55017 11.00307 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.023838 B = 0.004461 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.326003 B = 6275.549317 C = 6926.259650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.185 3.815 5 H 0.092 0.908 6 C -0.169 4.169 7 C 0.161 3.839 8 N -0.366 5.366 9 O 0.075 5.925 10 C 0.209 3.791 11 C 0.132 3.868 12 N -0.531 5.531 13 C 0.032 3.968 14 C 0.172 3.828 15 H 0.051 0.949 16 C -0.167 4.167 17 C -0.512 4.512 18 H 0.075 0.925 19 C 0.084 3.916 20 N -0.895 5.895 21 Si 0.916 3.084 22 H -0.272 1.272 23 H -0.311 1.311 24 H -0.271 1.271 25 N -0.472 5.472 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.024 0.976 37 H 0.091 0.909 38 H 0.038 0.962 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.031 0.969 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.146 -8.397 -0.356 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.293 6.293 4 C 0.125 3.875 5 H 0.110 0.890 6 C -0.227 4.227 7 C -0.112 4.112 8 N -0.074 5.074 9 O 0.015 5.985 10 C -0.012 4.012 11 C 0.002 3.998 12 N -0.259 5.259 13 C -0.116 4.116 14 C 0.068 3.932 15 H 0.068 0.932 16 C -0.225 4.225 17 C -0.551 4.551 18 H 0.093 0.907 19 C -0.121 4.121 20 N -0.531 5.531 21 Si 0.746 3.254 22 H -0.198 1.198 23 H -0.240 1.240 24 H -0.196 1.196 25 N -0.206 5.206 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.042 0.958 37 H 0.110 0.890 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.478 -8.970 -1.281 19.687 hybrid contribution -0.301 -0.409 0.324 0.602 sum -17.779 -9.379 -0.957 20.124 Atomic orbital electron populations 1.21731 0.93442 1.02257 1.03303 1.22581 0.95819 0.83297 1.00398 1.87990 1.19318 1.26919 1.95049 1.19897 0.82125 0.90601 0.94836 0.89038 1.22253 1.02372 1.03437 0.94638 1.25395 0.93132 0.95365 0.97329 1.74591 1.18940 1.00901 1.12935 1.85316 1.37361 1.35744 1.40046 1.29054 0.90094 0.87203 0.94883 1.20745 0.89486 0.99026 0.90557 1.62922 1.05957 1.37045 1.19965 1.22235 1.01706 0.92141 0.95475 1.19958 0.89810 0.92983 0.90446 0.93161 1.22318 0.99024 1.00780 1.00422 1.20832 1.04459 0.97355 1.32423 0.90730 1.25049 0.93678 0.99863 0.93478 1.69947 1.16331 1.34877 1.31966 0.86206 0.76567 0.82789 0.79805 1.19758 1.23957 1.19644 1.71850 1.18803 1.16661 1.13297 0.90941 0.91830 0.91726 0.92949 0.93040 0.91038 0.91117 0.90662 0.91312 0.87039 0.95803 0.89018 0.94302 0.92627 0.92909 0.95012 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.52 6.47 37.16 0.24 0.76 16 3 O -0.37 -5.01 9.97 -35.23 -0.35 -5.37 16 4 C 0.18 2.55 3.27 -27.88 -0.09 2.46 16 5 H 0.09 1.12 7.79 -51.93 -0.40 0.72 16 6 C -0.17 -2.05 9.51 37.16 0.35 -1.70 16 7 C 0.16 2.79 7.10 -156.37 -1.11 1.68 16 8 N -0.37 -6.61 12.16 30.90 0.38 -6.23 16 9 O 0.08 1.32 10.73 18.10 0.19 1.51 16 10 C 0.21 3.70 7.07 -13.06 -0.09 3.61 16 11 C 0.13 2.20 5.04 -4.97 -0.03 2.18 16 12 N -0.53 -10.82 2.78 -237.72 -0.66 -11.48 16 13 C 0.03 0.62 8.62 60.07 0.52 1.14 16 14 C 0.17 3.70 1.70 -68.86 -0.12 3.58 16 15 H 0.05 1.11 6.80 -51.93 -0.35 0.76 16 16 C -0.17 -2.98 8.40 37.16 0.31 -2.67 16 17 C -0.51 -13.47 7.76 -34.44 -0.27 -13.74 16 18 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 19 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 20 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 21 Si 0.92 23.14 26.26 -169.99 -4.46 18.67 16 22 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.31 -7.95 7.11 56.52 0.40 -7.55 16 24 H -0.27 -6.57 6.52 56.52 0.37 -6.20 16 25 N -0.47 -8.84 11.55 -9.86 -0.11 -8.95 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.41 7.87 -51.93 -0.41 0.00 16 30 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.97 6.83 -51.93 -0.35 0.61 16 35 H 0.11 1.78 8.00 -51.93 -0.42 1.36 16 36 H 0.02 0.41 6.62 -51.93 -0.34 0.06 16 37 H 0.09 2.01 6.99 -51.93 -0.36 1.64 16 38 H 0.04 0.72 6.83 -51.93 -0.35 0.37 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.95 6.75 -51.93 -0.35 0.60 16 41 H 0.03 0.47 6.53 -51.93 -0.34 0.14 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -31.33 340.92 -5.74 -37.07 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.64 Total: -3.21 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 0.00 Total: -1.24 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.37 Total: -52.58 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.16 Total: -3.86 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.46 Total: 18.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.33 -5.74 -37.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247699731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.902 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds