Wall clock time and date at job start Tue Mar 31 2020 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47148 * 2 1 4 4 C 1.52999 * 109.47072 * 239.99811 * 2 1 3 5 5 N 1.46896 * 109.47304 * 59.99969 * 4 2 1 6 6 C 1.46902 * 111.00102 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47187 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99892 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99817 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99691 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00284 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47510 * 89.99362 * 11 9 7 13 13 H 1.48503 * 109.47124 * 209.99784 * 11 9 7 14 14 H 1.48508 * 109.46864 * 329.99641 * 11 9 7 15 15 C 1.50700 * 109.46787 * 119.99905 * 2 1 3 16 16 C 1.39374 * 119.50598 * 119.97787 * 15 2 1 17 17 C 1.36087 * 120.98902 * 179.97438 * 16 15 2 18 18 C 1.40545 * 119.65544 * 0.03915 * 17 16 15 19 19 C 1.40533 * 121.28541 * 179.97438 * 18 17 16 20 20 C 1.36093 * 119.65526 * 179.97438 * 19 18 17 21 21 C 1.39378 * 120.98927 * 359.94849 * 20 19 18 22 22 C 1.36095 * 120.98758 * 0.06983 * 21 20 19 23 23 C 1.40545 * 119.65358 * 359.95511 * 22 21 20 24 24 C 1.36093 * 119.50416 * 299.99691 * 15 2 1 25 25 H 1.08997 * 109.47560 * 300.00693 * 1 2 3 26 26 H 1.09002 * 109.47146 * 60.00081 * 1 2 3 27 27 H 1.08994 * 109.47249 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47195 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.47258 * 299.99298 * 3 2 1 30 30 H 1.08994 * 109.47648 * 59.99995 * 3 2 1 31 31 H 1.08995 * 109.47206 * 180.02562 * 4 2 1 32 32 H 1.09007 * 109.46845 * 299.99852 * 4 2 1 33 33 H 1.00899 * 110.99782 * 56.04457 * 5 4 2 34 34 H 1.09002 * 109.47139 * 300.00556 * 6 5 4 35 35 H 1.08997 * 109.47088 * 60.00065 * 6 5 4 36 36 H 0.97004 * 119.99774 * 180.02562 * 10 9 7 37 37 H 1.07996 * 119.50518 * 0.02562 * 16 15 2 38 38 H 1.08001 * 120.17917 * 179.97438 * 17 16 15 39 39 H 1.07996 * 120.17302 * 359.95478 * 19 18 17 40 40 H 1.08000 * 119.50630 * 179.97438 * 20 19 18 41 41 H 1.07996 * 119.50867 * 180.02562 * 21 20 19 42 42 H 1.07998 * 120.16921 * 180.22554 * 22 21 20 43 43 H 1.08005 * 120.17341 * 359.96274 * 24 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5504 -0.0289 -2.4487 6 6 2.0209 -0.6954 -3.6703 7 6 1.5003 0.0418 -4.8771 8 1 0.8815 0.9177 -4.7494 9 6 1.8141 -0.4018 -6.1443 10 7 1.3594 0.2413 -7.1975 11 14 2.8839 -1.9171 -6.3652 12 1 2.0237 -3.1261 -6.4241 13 1 3.6570 -1.7975 -7.6275 14 1 3.8217 -2.0322 -5.2194 15 6 2.0323 -0.7104 1.2305 16 6 2.8325 -1.8429 1.0907 17 6 3.3029 -2.5074 2.1812 18 6 2.9782 -2.0479 3.4691 19 6 3.4448 -2.7080 4.6187 20 6 3.1105 -2.2340 5.8498 21 6 2.3113 -1.1006 5.9896 22 6 1.8410 -0.4359 4.8991 23 6 2.1649 -0.8960 3.6112 24 6 1.6973 -0.2367 2.4616 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6768 1.9563 0.8899 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -1.7490 -1.2491 33 1 1.8198 0.9434 -2.4402 34 1 3.1108 -0.6957 -3.6873 35 1 1.6571 -1.7227 -3.6868 36 1 1.5799 -0.0710 -8.0890 37 1 3.0837 -2.1980 0.1022 38 1 3.9217 -3.3839 2.0577 39 1 4.0653 -3.5870 4.5256 40 1 3.4701 -2.7434 6.7316 41 1 2.0610 -0.7450 6.9781 42 1 1.2258 0.4430 5.0228 43 1 1.0767 0.6423 2.5546 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258908739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:47 Heat of formation + Delta-G solvation = 31.942862 kcal Electronic energy + Delta-G solvation = -21381.668037 eV Core-core repulsion = 18390.809326 eV Total energy + Delta-G solvation = -2990.858711 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66050 -38.39692 -35.77303 -33.90519 -32.71111 -31.91933 -30.08755 -28.92882 -27.53135 -27.03047 -25.15635 -23.06395 -22.91856 -21.87931 -21.06514 -19.37388 -17.27787 -17.08821 -16.52026 -16.16002 -15.20316 -14.84961 -14.76608 -14.25083 -14.01417 -13.80706 -13.63482 -13.31975 -13.26352 -13.01410 -12.92641 -12.40000 -12.25313 -12.01686 -11.74145 -11.47827 -11.41413 -11.25641 -11.10405 -10.81383 -10.75566 -10.56530 -10.39710 -10.18139 -10.01138 -9.79142 -9.27924 -8.59280 -8.58608 -7.94501 -7.44841 -6.06326 -4.04148 0.44840 0.92777 1.97481 2.90289 3.28364 3.35507 3.37609 4.02957 4.41506 4.44439 4.61110 4.69964 4.80131 4.87251 5.04016 5.09734 5.18040 5.25219 5.26388 5.33181 5.34680 5.39450 5.49156 5.66591 5.84447 5.85286 5.93296 5.98620 6.03326 6.13412 6.14333 6.19975 6.20406 6.26305 6.31927 6.42918 6.54928 6.65852 6.70583 6.73459 6.78364 6.94437 7.02991 7.60486 7.89104 8.33443 8.64793 9.01671 9.55812 11.06973 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.032685 B = 0.003254 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.448710 B = 8602.734348 C = 9260.803739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.026 4.026 3 C -0.140 4.140 4 C 0.065 3.935 5 N -0.678 5.678 6 C 0.164 3.836 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.900 5.900 11 Si 0.877 3.123 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.268 1.268 15 C -0.052 4.052 16 C -0.110 4.110 17 C -0.109 4.109 18 C -0.058 4.058 19 C -0.105 4.105 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.106 4.106 23 C -0.048 4.048 24 C -0.108 4.108 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.021 0.979 32 H 0.067 0.933 33 H 0.335 0.665 34 H -0.017 1.017 35 H 0.021 0.979 36 H 0.264 0.736 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 -3.323 25.817 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.027 4.027 3 C -0.198 4.198 4 C -0.065 4.065 5 N -0.309 5.309 6 C 0.036 3.964 7 C -0.553 4.553 8 H 0.097 0.903 9 C -0.134 4.134 10 N -0.539 5.539 11 Si 0.705 3.295 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.053 4.053 16 C -0.128 4.128 17 C -0.127 4.127 18 C -0.058 4.058 19 C -0.122 4.122 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.124 4.124 23 C -0.048 4.048 24 C -0.126 4.126 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.154 0.846 34 H 0.001 0.999 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.773 -3.649 25.596 26.003 hybrid contribution 1.554 -0.674 -0.258 1.713 sum 4.327 -4.323 25.338 26.066 Atomic orbital electron populations 1.21758 0.92687 1.01967 1.01967 1.19587 0.96769 0.94954 0.91379 1.21916 1.00768 0.94790 1.02299 1.22059 0.96093 0.98176 0.90176 1.60499 1.63312 1.06025 1.01069 1.19990 0.92795 0.95317 0.88305 1.21056 1.31933 1.13768 0.88559 0.90299 1.24908 0.95755 0.96807 0.95901 1.69901 1.45615 1.40311 0.98120 0.86825 0.81143 0.83875 0.77674 1.20152 1.21240 1.19290 1.19685 0.95971 0.94914 0.94729 1.21040 0.97100 0.95202 0.99423 1.21017 1.00278 0.99987 0.91458 1.18104 0.98362 0.95531 0.93808 1.21023 0.99700 0.99541 0.91984 1.20799 0.99076 0.97016 0.97414 1.20808 0.98410 0.96076 0.98695 1.21031 0.99920 0.99853 0.91615 1.18082 0.97746 0.95197 0.93729 1.20813 1.00600 1.00083 0.91074 0.93710 0.90289 0.92996 0.92944 0.91122 0.92717 0.96067 0.91485 0.84613 0.99936 0.96076 0.92663 0.85268 0.85713 0.85833 0.86290 0.86255 0.85749 0.85596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.12 37.16 0.30 -1.43 16 2 C -0.03 -0.36 0.67 -155.66 -0.10 -0.47 16 3 C -0.14 -1.79 7.95 37.15 0.30 -1.49 16 4 C 0.06 1.07 3.29 -3.83 -0.01 1.06 16 5 N -0.68 -13.64 5.70 -115.06 -0.66 -14.30 16 6 C 0.16 3.96 4.51 -4.97 -0.02 3.94 16 7 C -0.51 -14.70 9.87 -34.44 -0.34 -15.04 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 11 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 15 C -0.05 -0.68 4.75 -104.97 -0.50 -1.18 16 16 C -0.11 -1.40 8.87 -39.93 -0.35 -1.75 16 17 C -0.11 -1.27 9.77 -39.49 -0.39 -1.65 16 18 C -0.06 -0.68 5.74 -106.83 -0.61 -1.30 16 19 C -0.10 -1.03 9.77 -39.49 -0.39 -1.41 16 20 C -0.13 -1.10 9.95 -39.93 -0.40 -1.50 16 21 C -0.12 -1.08 9.95 -39.93 -0.40 -1.48 16 22 C -0.11 -1.05 9.77 -39.48 -0.39 -1.44 16 23 C -0.05 -0.56 5.74 -106.83 -0.61 -1.18 16 24 C -0.11 -1.28 8.37 -39.49 -0.33 -1.61 16 25 H 0.04 0.52 7.33 -51.93 -0.38 0.14 16 26 H 0.08 1.20 7.60 -51.93 -0.39 0.81 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.95 6.57 -51.92 -0.34 0.61 16 30 H 0.05 0.60 7.33 -51.93 -0.38 0.22 16 31 H 0.02 0.35 7.48 -51.93 -0.39 -0.04 16 32 H 0.07 1.12 7.48 -51.92 -0.39 0.73 16 33 H 0.34 6.54 6.76 -39.29 -0.27 6.27 16 34 H -0.02 -0.41 7.20 -51.93 -0.37 -0.79 16 35 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.13 1.63 5.80 -52.49 -0.30 1.32 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.13 1.31 6.98 -52.48 -0.37 0.94 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -31.11 341.50 -10.27 -41.38 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.53 Total: 3.77 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: -4.34 Total: -26.04 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.12 Total: -41.23 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.11 -10.27 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258908739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.323 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds