Wall clock time and date at job start Tue Mar 31 2020 06:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46829 * 2 1 4 4 O 1.42900 * 109.47287 * 119.99303 * 2 1 3 5 5 C 1.42899 * 114.00065 * 150.00056 * 4 2 1 6 6 C 1.50699 * 109.47086 * 180.02562 * 5 4 2 7 7 N 1.31129 * 126.55436 * 90.00559 * 6 5 4 8 8 C 1.34485 * 105.61795 * 179.97438 * 7 6 5 9 9 C 1.50698 * 126.29139 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47122 * 15.00052 * 9 8 7 11 11 C 1.53006 * 109.47184 * 255.00166 * 9 8 7 12 12 N 1.46899 * 109.47365 * 134.99930 * 9 8 7 13 13 C 1.46903 * 110.99807 * 205.00210 * 12 9 8 14 14 C 1.53001 * 109.46980 * 179.97438 * 13 12 9 15 15 C 1.50699 * 109.47166 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00327 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00339 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99356 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00418 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46908 * 59.99931 * 19 17 15 21 21 H 1.48495 * 109.47119 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.46917 * 300.00253 * 19 17 15 23 23 N 1.29947 * 107.42702 * 0.23740 * 8 7 6 24 24 O 1.21310 * 110.24839 * 359.58289 * 23 8 7 25 25 H 1.08995 * 109.47281 * 300.00407 * 1 2 3 26 26 H 1.08994 * 109.47119 * 60.00690 * 1 2 3 27 27 H 1.09002 * 109.46392 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47281 * 239.99593 * 2 1 3 29 29 H 1.08999 * 109.46850 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46763 * 299.99747 * 3 2 1 31 31 H 1.08995 * 109.47521 * 59.99740 * 3 2 1 32 32 H 1.08996 * 109.46798 * 60.00380 * 5 4 2 33 33 H 1.09002 * 109.47010 * 300.00629 * 5 4 2 34 34 H 1.09001 * 109.47002 * 299.99404 * 11 9 8 35 35 H 1.08993 * 109.46955 * 59.99842 * 11 9 8 36 36 H 1.09000 * 109.47050 * 179.97438 * 11 9 8 37 37 H 1.00901 * 110.99898 * 328.95530 * 12 9 8 38 38 H 1.09000 * 109.47514 * 299.99609 * 13 12 9 39 39 H 1.08999 * 109.47620 * 60.00050 * 13 12 9 40 40 H 1.08998 * 109.47159 * 299.99923 * 14 13 12 41 41 H 1.09001 * 109.47307 * 59.99948 * 14 13 12 42 42 H 0.97002 * 119.99189 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 3.2661 -1.3243 0.9888 6 6 3.6694 -1.9985 2.2748 7 7 3.3820 -3.2256 2.6368 8 6 3.9451 -3.3873 3.8473 9 6 3.8995 -4.6338 4.6929 10 1 3.5742 -5.4758 4.0819 11 6 2.9158 -4.4313 5.8473 12 7 5.2379 -4.9087 5.2326 13 6 5.3994 -6.3366 5.5375 14 6 6.8025 -6.5834 6.0955 15 6 6.9681 -8.0481 6.4089 16 1 6.1541 -8.7345 6.2278 17 6 8.1591 -8.5123 6.9258 18 7 9.1508 -7.6766 7.1449 19 14 8.3640 -10.3277 7.3150 20 1 8.1764 -11.1239 6.0755 21 1 9.7263 -10.5674 7.8552 22 1 7.3525 -10.7351 8.3229 23 7 4.5310 -2.2694 4.1564 24 8 4.3889 -1.4601 3.2639 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 4.0200 -0.5872 0.7126 33 1 3.1810 -2.0705 0.1988 34 1 3.2412 -3.5894 6.4584 35 1 1.9229 -4.2274 5.4469 36 1 2.8826 -5.3331 6.4587 37 1 5.9556 -4.5909 4.5986 38 1 4.6563 -6.6368 6.2763 39 1 5.2630 -6.9204 4.6272 40 1 7.5454 -6.2834 5.3564 41 1 6.9394 -5.9997 7.0058 42 1 9.9888 -8.0033 7.5082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290079347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:58 Heat of formation + Delta-G solvation = 11.680128 kcal Electronic energy + Delta-G solvation = -21610.955192 eV Core-core repulsion = 18208.368560 eV Total energy + Delta-G solvation = -3402.586632 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.67714 -39.01001 -37.38157 -35.50079 -33.94700 -33.13668 -32.16143 -30.71828 -28.11221 -28.00331 -27.48611 -25.15761 -23.80654 -23.07414 -21.87004 -20.66622 -20.31896 -18.32547 -17.74063 -17.18000 -16.39813 -16.15867 -15.85122 -15.45237 -14.71508 -14.45368 -14.35579 -13.91631 -13.58038 -13.24578 -12.93771 -12.69727 -12.64806 -12.47129 -12.28807 -12.26290 -11.91425 -11.70468 -11.60521 -11.40320 -11.23794 -11.12093 -11.04791 -10.87215 -10.56862 -10.21045 -10.09896 -9.98550 -9.39999 -9.16750 -8.35165 -7.96714 -5.99016 -4.02033 0.94610 2.07919 2.48636 3.25728 3.34239 3.38487 3.40852 3.58884 3.97774 4.34543 4.42713 4.48293 4.55818 4.62194 4.68256 4.84884 4.94196 5.13600 5.23567 5.31994 5.33635 5.36690 5.37401 5.41466 5.58750 5.70790 5.75059 5.80074 5.93422 6.01979 6.26211 6.31260 6.41464 6.57424 6.94125 7.35414 7.67446 7.74297 7.88540 8.06673 8.13697 8.42121 9.04761 9.61548 11.12341 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.042824 B = 0.002414 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.688645 B =11594.167410 C =11733.953581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.083 3.917 3 C -0.179 4.179 4 O -0.375 6.375 5 C 0.162 3.838 6 C 0.166 3.834 7 N -0.457 5.457 8 C 0.170 3.830 9 C 0.173 3.827 10 H 0.072 0.928 11 C -0.134 4.134 12 N -0.678 5.678 13 C 0.065 3.935 14 C 0.026 3.974 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.350 5.350 24 O 0.090 5.910 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.339 0.661 38 H 0.064 0.936 39 H 0.019 0.981 40 H 0.013 0.987 41 H 0.027 0.973 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.015 17.349 -16.754 28.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.026 3.974 3 C -0.236 4.236 4 O -0.294 6.294 5 C 0.084 3.916 6 C -0.056 4.056 7 N -0.193 5.193 8 C -0.103 4.103 9 C 0.062 3.938 10 H 0.090 0.910 11 C -0.193 4.193 12 N -0.311 5.311 13 C -0.062 4.062 14 C -0.011 4.011 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.053 5.053 24 O 0.027 5.973 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.157 0.843 38 H 0.083 0.917 39 H 0.038 0.962 40 H 0.032 0.968 41 H 0.045 0.955 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.862 17.235 -15.149 27.895 hybrid contribution 0.451 -1.212 -0.998 1.634 sum -15.411 16.023 -16.147 27.477 Atomic orbital electron populations 1.21878 0.93051 1.03128 1.02792 1.22188 0.95416 0.92436 0.87361 1.22343 1.01806 0.96432 1.03027 1.88009 1.34804 1.69962 1.36632 1.20521 0.87757 0.96255 0.87113 1.28141 0.93706 0.89078 0.94662 1.71859 1.21183 1.15012 1.11232 1.26052 0.95897 0.97060 0.91321 1.19891 0.93540 0.88064 0.92309 0.91029 1.21784 0.96572 1.03619 0.97338 1.60770 1.00836 1.21014 1.48435 1.22295 1.02056 0.83422 0.98459 1.19060 0.88856 0.96512 0.96700 1.21115 0.98948 0.93354 1.42714 0.92715 1.25017 0.95979 0.97767 0.95660 1.69974 1.04041 1.34440 1.44707 0.86620 0.77150 0.85327 0.78667 1.20298 1.21280 1.20186 1.74756 1.20534 1.01225 1.08781 1.85358 1.53447 1.37431 1.21073 0.91601 0.90882 0.91686 0.91467 0.92131 0.91283 0.91462 0.89327 0.88447 0.91544 0.92713 0.90763 0.84280 0.91747 0.96229 0.96827 0.95461 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.56 37.16 0.36 -0.44 16 2 C 0.08 0.47 3.34 -26.73 -0.09 0.38 16 3 C -0.18 -0.84 9.53 37.16 0.35 -0.49 16 4 O -0.38 -3.33 9.97 -35.23 -0.35 -3.68 16 5 C 0.16 1.25 6.37 36.01 0.23 1.47 16 6 C 0.17 2.03 8.14 -13.06 -0.11 1.92 16 7 N -0.46 -6.78 11.55 -9.87 -0.11 -6.90 16 8 C 0.17 2.76 6.71 -156.38 -1.05 1.71 16 9 C 0.17 2.86 3.16 -68.86 -0.22 2.64 16 10 H 0.07 1.15 7.80 -51.93 -0.40 0.75 16 11 C -0.13 -2.00 9.40 37.16 0.35 -1.66 16 12 N -0.68 -13.03 6.30 -107.95 -0.68 -13.71 16 13 C 0.07 1.40 5.42 -3.82 -0.02 1.38 16 14 C 0.03 0.70 5.23 -27.88 -0.15 0.55 16 15 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 19 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 N -0.35 -5.77 12.15 30.90 0.38 -5.39 16 24 O 0.09 1.26 11.31 18.10 0.20 1.46 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.27 7.79 -51.93 -0.40 -0.13 16 29 H 0.06 0.26 7.87 -51.93 -0.41 -0.15 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.44 7.87 -51.93 -0.41 0.03 16 33 H 0.10 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.09 7.45 -51.93 -0.39 0.70 16 37 H 0.34 6.61 8.35 -39.29 -0.33 6.28 16 38 H 0.06 1.35 7.44 -51.93 -0.39 0.97 16 39 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -33.01 356.89 -7.14 -40.14 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.91 Total: -1.39 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -0.75 Total: -6.25 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.32 Total: -52.54 kcal Atomic # 8 Polarization: -2.07 SS G_CDS: -0.15 Total: -2.22 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.01 -7.14 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290079347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.824 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds