Wall clock time and date at job start Tue Mar 31 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86790 * 120.00089 * 2 1 4 4 H 1.48504 * 109.47503 * 239.99906 * 3 2 1 5 5 H 1.48504 * 109.47235 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47239 * 120.00002 * 3 2 1 7 7 C 1.37885 * 119.99557 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99664 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00347 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47130 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47191 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99732 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99920 * 180.02562 * 11 10 9 14 14 N 1.40099 * 119.99825 * 180.02562 * 13 11 10 15 15 C 1.34774 * 119.99825 * 179.97438 * 14 13 11 16 16 O 1.21585 * 120.00115 * 179.97438 * 15 14 13 17 17 N 1.34777 * 120.00134 * 359.97438 * 15 14 13 18 18 C 1.46506 * 120.00033 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47289 * 275.00400 * 18 17 15 20 20 C 1.52996 * 109.47131 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47518 * 59.99828 * 20 19 18 22 22 C 1.53005 * 109.46632 * 300.00318 * 21 20 19 23 23 C 1.52996 * 109.47571 * 60.00168 * 22 21 20 24 24 H 0.97001 * 119.99938 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47206 * 60.00319 * 9 7 2 26 26 H 1.09003 * 109.47320 * 299.99949 * 9 7 2 27 27 H 1.09004 * 109.47474 * 60.00075 * 10 9 7 28 28 H 1.09005 * 109.47326 * 299.99970 * 10 9 7 29 29 H 0.97005 * 120.00144 * 359.97438 * 13 11 10 30 30 H 0.96995 * 120.00375 * 359.97438 * 14 13 11 31 31 H 0.97000 * 120.00155 * 0.02562 * 17 15 14 32 32 H 1.09001 * 109.47060 * 35.00669 * 18 17 15 33 33 H 1.09001 * 109.46832 * 299.99854 * 19 18 17 34 34 H 1.08996 * 109.46952 * 59.99873 * 19 18 17 35 35 H 1.09001 * 109.46997 * 299.99574 * 20 19 18 36 36 H 1.09004 * 109.47552 * 179.97438 * 20 19 18 37 37 H 1.08992 * 109.47399 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47194 * 59.99866 * 21 20 19 39 39 H 1.09001 * 109.47420 * 299.99415 * 22 21 20 40 40 H 1.09004 * 109.46832 * 179.97438 * 22 21 20 41 41 H 1.08992 * 109.47346 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.47364 * 59.99212 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9673 0.0001 12 8 0.2789 -4.9672 0.0000 13 7 2.1655 -6.1344 0.0007 14 7 1.4650 -7.3477 0.0008 15 6 2.1389 -8.5149 0.0009 16 8 1.5310 -9.5679 0.0014 17 7 3.4867 -8.5149 0.0004 18 6 4.2192 -9.7837 0.0011 19 6 4.3657 -10.2873 1.4384 20 6 5.1313 -11.6119 1.4391 21 6 6.5183 -11.3999 0.8291 22 6 6.3716 -10.8963 -0.6082 23 6 5.6062 -9.5715 -0.6089 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6044 -0.8906 29 1 3.1356 -6.1345 0.0004 30 1 0.4951 -7.3478 0.0007 31 1 3.9717 -7.6749 0.0004 32 1 3.6717 -10.5197 -0.5877 33 1 4.9133 -9.5513 2.0271 34 1 3.3776 -10.4380 1.8731 35 1 4.5841 -12.3481 0.8503 36 1 5.2361 -11.9705 2.4631 37 1 7.0634 -12.3436 0.8293 38 1 7.0655 -10.6637 1.4180 39 1 5.8245 -11.6324 -1.1971 40 1 7.3598 -10.7447 -1.0427 41 1 5.5014 -9.2130 -1.6329 42 1 6.1534 -8.8354 -0.0200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292021949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:20 Heat of formation + Delta-G solvation = -62.058939 kcal Electronic energy + Delta-G solvation = -21921.999983 eV Core-core repulsion = 18516.215785 eV Total energy + Delta-G solvation = -3405.784198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.67110 -39.29716 -38.29006 -35.60144 -34.30683 -33.58477 -31.64384 -31.14023 -30.36202 -29.23672 -25.73273 -23.22280 -22.98841 -22.22199 -20.93498 -20.62481 -20.01663 -18.84970 -17.60962 -16.66629 -16.03848 -15.79678 -15.41842 -15.32088 -14.94216 -14.74752 -14.49899 -14.44243 -14.21199 -13.49259 -13.21971 -12.94019 -12.66143 -12.56012 -12.27920 -11.66099 -11.53217 -11.30725 -11.20050 -11.07882 -10.96335 -10.82885 -10.71161 -10.62893 -10.47801 -10.08753 -9.83950 -9.45296 -9.36452 -9.19463 -8.40083 -8.21640 -6.03089 -4.08448 1.96475 2.77767 2.82209 3.13237 3.30100 3.35508 3.36586 4.28994 4.37203 4.40306 4.51000 4.75130 4.77109 4.87293 5.06206 5.10603 5.11900 5.23045 5.25371 5.32118 5.39804 5.64343 5.68465 5.70301 5.74103 5.85875 5.96516 6.00859 6.02047 6.04125 6.23895 6.46287 6.57528 6.75807 7.44906 7.63833 7.70502 7.73624 7.97321 8.24893 8.31320 8.61028 8.99145 9.55638 11.07713 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027597 B = 0.002718 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.373178 B =10298.814888 C =11033.318202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.119 4.119 11 C 0.512 3.488 12 O -0.525 6.525 13 N -0.545 5.545 14 N -0.533 5.533 15 C 0.713 3.287 16 O -0.582 6.582 17 N -0.742 5.742 18 C 0.163 3.837 19 C -0.132 4.132 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.128 4.128 24 H 0.263 0.737 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.414 0.586 30 H 0.442 0.558 31 H 0.392 0.608 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.392 -21.270 0.512 26.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.160 4.160 11 C 0.301 3.699 12 O -0.397 6.397 13 N -0.300 5.300 14 N -0.288 5.288 15 C 0.412 3.588 16 O -0.457 6.457 17 N -0.399 5.399 18 C 0.058 3.942 19 C -0.171 4.171 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.166 4.166 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.255 0.745 30 H 0.288 0.712 31 H 0.227 0.773 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.015 -21.955 0.505 26.052 hybrid contribution 0.765 1.402 0.041 1.598 sum 14.780 -20.553 0.546 25.321 Atomic orbital electron populations 1.69981 1.06085 1.26879 1.49701 1.25025 0.94843 0.99304 0.95157 0.86625 0.79526 0.83047 0.78562 1.20208 1.21265 1.20216 1.21127 0.92917 0.90806 1.52042 0.92501 1.18937 0.93116 0.89069 0.98944 1.21910 1.00927 0.90018 1.03171 1.22074 0.89211 0.83911 0.74725 1.90720 1.14168 1.86681 1.48093 1.45540 1.07665 0.97027 1.79742 1.44525 1.08820 0.95349 1.80072 1.15699 0.82163 0.82774 0.78194 1.91001 1.67538 1.27924 1.59218 1.45235 1.04537 1.09716 1.80418 1.20883 0.91654 0.84810 0.96807 1.21965 1.01154 0.97305 0.96643 1.21495 0.95679 0.97200 1.01117 1.21586 0.97158 1.01187 0.96055 1.21475 1.00214 0.96448 0.97178 1.21834 0.94688 0.98670 1.01447 0.92771 0.95573 0.95587 0.89520 0.89506 0.74510 0.71242 0.77333 0.89213 0.91767 0.91202 0.91690 0.91725 0.91869 0.91841 0.91597 0.91433 0.91103 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.04 0.94 4.26 -27.89 -0.12 0.82 16 10 C -0.12 -2.13 5.64 -27.88 -0.16 -2.29 16 11 C 0.51 8.89 7.95 -10.98 -0.09 8.80 16 12 O -0.52 -11.51 15.82 5.56 0.09 -11.42 16 13 N -0.55 -6.93 6.26 31.22 0.20 -6.73 16 14 N -0.53 -7.31 6.26 27.63 0.17 -7.13 16 15 C 0.71 9.47 8.64 -86.92 -0.75 8.72 16 16 O -0.58 -9.68 16.84 5.29 0.09 -9.59 16 17 N -0.74 -7.00 5.04 -58.67 -0.30 -7.29 16 18 C 0.16 1.38 2.45 -67.93 -0.17 1.21 16 19 C -0.13 -1.09 5.49 -26.73 -0.15 -1.23 16 20 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 21 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 22 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 23 C -0.13 -0.77 5.39 -26.73 -0.14 -0.92 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 27 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.41 3.64 6.70 -182.59 -1.22 2.42 16 30 H 0.44 6.65 8.10 -182.60 -1.48 5.17 16 31 H 0.39 2.77 6.52 -40.82 -0.27 2.50 16 32 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 345.39 15.07 5.20 5.20 Total: -1.00 -34.28 345.39 -10.11 -44.39 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -8.82 Total: 3.03 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.46 Total: -0.50 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.81 Total: -47.07 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.18 Total: -21.01 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.28 -10.11 -44.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292021949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.672 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds