Wall clock time and date at job start Tue Mar 31 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86790 * 120.00089 * 2 1 4 4 H 1.48504 * 109.47503 * 239.99906 * 3 2 1 5 5 H 1.48504 * 109.47235 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47239 * 120.00002 * 3 2 1 7 7 C 1.37885 * 119.99557 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99664 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00347 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47130 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47191 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99732 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99920 * 180.02562 * 11 10 9 14 14 N 1.40099 * 119.99825 * 180.02562 * 13 11 10 15 15 C 1.34774 * 119.99825 * 179.97438 * 14 13 11 16 16 O 1.21585 * 120.00115 * 179.97438 * 15 14 13 17 17 N 1.34777 * 120.00134 * 359.97438 * 15 14 13 18 18 C 1.46506 * 120.00033 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47289 * 275.00400 * 18 17 15 20 20 C 1.52996 * 109.47131 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47518 * 59.99828 * 20 19 18 22 22 C 1.53005 * 109.46632 * 300.00318 * 21 20 19 23 23 C 1.52996 * 109.47571 * 60.00168 * 22 21 20 24 24 H 0.97001 * 119.99938 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47206 * 60.00319 * 9 7 2 26 26 H 1.09003 * 109.47320 * 299.99949 * 9 7 2 27 27 H 1.09004 * 109.47474 * 60.00075 * 10 9 7 28 28 H 1.09005 * 109.47326 * 299.99970 * 10 9 7 29 29 H 0.97005 * 120.00144 * 359.97438 * 13 11 10 30 30 H 0.96995 * 120.00375 * 359.97438 * 14 13 11 31 31 H 0.97000 * 120.00155 * 0.02562 * 17 15 14 32 32 H 1.09001 * 109.47060 * 35.00669 * 18 17 15 33 33 H 1.09001 * 109.46832 * 299.99854 * 19 18 17 34 34 H 1.08996 * 109.46952 * 59.99873 * 19 18 17 35 35 H 1.09001 * 109.46997 * 299.99574 * 20 19 18 36 36 H 1.09004 * 109.47552 * 179.97438 * 20 19 18 37 37 H 1.08992 * 109.47399 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47194 * 59.99866 * 21 20 19 39 39 H 1.09001 * 109.47420 * 299.99415 * 22 21 20 40 40 H 1.09004 * 109.46832 * 179.97438 * 22 21 20 41 41 H 1.08992 * 109.47346 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.47364 * 59.99212 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9673 0.0001 12 8 0.2789 -4.9672 0.0000 13 7 2.1655 -6.1344 0.0007 14 7 1.4650 -7.3477 0.0008 15 6 2.1389 -8.5149 0.0009 16 8 1.5310 -9.5679 0.0014 17 7 3.4867 -8.5149 0.0004 18 6 4.2192 -9.7837 0.0011 19 6 4.3657 -10.2873 1.4384 20 6 5.1313 -11.6119 1.4391 21 6 6.5183 -11.3999 0.8291 22 6 6.3716 -10.8963 -0.6082 23 6 5.6062 -9.5715 -0.6089 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6044 -0.8906 29 1 3.1356 -6.1345 0.0004 30 1 0.4951 -7.3478 0.0007 31 1 3.9717 -7.6749 0.0004 32 1 3.6717 -10.5197 -0.5877 33 1 4.9133 -9.5513 2.0271 34 1 3.3776 -10.4380 1.8731 35 1 4.5841 -12.3481 0.8503 36 1 5.2361 -11.9705 2.4631 37 1 7.0634 -12.3436 0.8293 38 1 7.0655 -10.6637 1.4180 39 1 5.8245 -11.6324 -1.1971 40 1 7.3598 -10.7447 -1.0427 41 1 5.5014 -9.2130 -1.6329 42 1 6.1534 -8.8354 -0.0200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292021949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:19 Heat of formation + Delta-G solvation = -86.955215 kcal Electronic energy + Delta-G solvation = -21923.079567 eV Core-core repulsion = 18516.215785 eV Total energy + Delta-G solvation = -3406.863782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75375 -40.53574 -39.09500 -36.90251 -35.55865 -35.11804 -33.31689 -31.79014 -31.66568 -29.99644 -27.59566 -24.09128 -23.86192 -23.54511 -21.87754 -21.78394 -20.94592 -19.85980 -19.05375 -18.25531 -17.16934 -16.96783 -16.63587 -16.48407 -16.29650 -16.16530 -15.49251 -15.08126 -15.05865 -14.77807 -14.35138 -14.20971 -13.80164 -13.47869 -13.25028 -13.10429 -12.77688 -12.51871 -12.51626 -12.24278 -12.04877 -11.91018 -11.88386 -11.64420 -11.41365 -11.35214 -11.30669 -11.15480 -10.97250 -10.52514 -10.24040 -9.39338 -8.15149 -6.28525 0.78688 1.46129 1.46348 1.49618 1.57140 1.91404 1.96588 2.45497 3.18939 3.48224 3.72807 3.83924 3.98776 4.10999 4.23560 4.33198 4.46010 4.49504 4.57221 4.58433 4.59745 4.72297 4.90553 5.02574 5.06468 5.14719 5.22080 5.24898 5.34667 5.35744 5.38754 5.45468 5.51372 5.55027 5.64358 5.66069 5.88658 6.19067 6.30313 6.61673 6.91095 7.19990 7.38933 7.42003 8.97215 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027597 B = 0.002718 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.373178 B =10298.814888 C =11033.318202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.540 4.540 8 H 0.082 0.918 9 C 0.039 3.961 10 C -0.106 4.106 11 C 0.517 3.483 12 O -0.579 6.579 13 N -0.515 5.515 14 N -0.538 5.538 15 C 0.713 3.287 16 O -0.617 6.617 17 N -0.725 5.725 18 C 0.161 3.839 19 C -0.128 4.128 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.121 4.121 24 H 0.261 0.739 25 H -0.015 1.015 26 H -0.016 1.016 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.437 0.563 30 H 0.435 0.565 31 H 0.407 0.593 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.402 -21.163 0.464 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.578 4.578 8 H 0.100 0.900 9 C 0.001 3.999 10 C -0.146 4.146 11 C 0.306 3.694 12 O -0.456 6.456 13 N -0.270 5.270 14 N -0.291 5.291 15 C 0.412 3.588 16 O -0.494 6.494 17 N -0.382 5.382 18 C 0.056 3.944 19 C -0.167 4.167 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.159 4.159 24 H 0.070 0.930 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.282 0.718 30 H 0.279 0.721 31 H 0.244 0.756 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 18.150 -21.879 0.456 28.431 hybrid contribution -0.484 1.262 0.065 1.354 sum 17.666 -20.617 0.521 27.155 Atomic orbital electron populations 1.70170 1.08341 1.27789 1.51599 1.26119 0.95648 1.03933 0.94836 0.85405 0.78017 0.77500 0.79509 1.18616 1.21892 1.18644 1.21691 0.94229 0.91314 1.50521 0.89988 1.18736 0.93833 0.92300 0.95055 1.21652 0.99281 0.87386 1.06329 1.21859 0.88327 0.84936 0.74306 1.90716 1.16520 1.87458 1.50904 1.45006 1.08433 0.95864 1.77676 1.44584 1.08727 0.95516 1.80285 1.15808 0.83157 0.81895 0.77934 1.90979 1.68605 1.29079 1.60761 1.45167 1.03068 1.11030 1.78888 1.21015 0.92702 0.83757 0.96914 1.21918 0.99941 0.98546 0.96315 1.21492 0.96368 0.96047 1.01488 1.21571 0.96106 1.01931 0.96013 1.21496 1.00765 0.95882 0.97153 1.21813 0.92859 0.99570 1.01651 0.92991 0.99704 0.99730 0.86249 0.86205 0.71770 0.72129 0.75586 0.91435 0.90683 0.94129 0.92517 0.91289 0.91005 0.91096 0.92166 0.89924 0.90697 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 2 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 3 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.54 -28.70 9.11 25.60 0.23 -28.47 16 8 H 0.08 3.86 7.74 -2.91 -0.02 3.83 16 9 C 0.04 1.99 4.26 29.84 0.13 2.12 16 10 C -0.11 -3.57 5.64 29.85 0.17 -3.40 16 11 C 0.52 17.51 7.95 87.66 0.70 18.21 16 12 O -0.58 -26.22 15.82 -3.03 -0.05 -26.27 16 13 N -0.51 -12.08 6.26 -173.53 -1.09 -13.16 16 14 N -0.54 -14.43 6.26 -184.75 -1.16 -15.58 16 15 C 0.71 18.52 8.64 179.05 1.55 20.06 16 16 O -0.62 -20.87 16.84 -3.98 -0.07 -20.94 16 17 N -0.72 -12.33 5.04 -457.80 -2.31 -14.64 16 18 C 0.16 2.49 2.45 44.99 0.11 2.60 16 19 C -0.13 -1.98 5.49 30.59 0.17 -1.82 16 20 C -0.12 -1.40 5.92 30.59 0.18 -1.22 16 21 C -0.12 -1.00 5.92 30.60 0.18 -0.82 16 22 C -0.11 -0.94 5.92 30.59 0.18 -0.76 16 23 C -0.12 -1.11 5.39 30.59 0.16 -0.94 16 24 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 25 H -0.02 -0.92 8.10 -2.39 -0.02 -0.93 16 26 H -0.02 -0.93 8.10 -2.39 -0.02 -0.95 16 27 H 0.12 3.30 8.14 -2.38 -0.02 3.28 16 28 H 0.12 3.31 8.14 -2.38 -0.02 3.29 16 29 H 0.44 6.10 6.70 -213.31 -1.43 4.67 16 30 H 0.43 13.35 8.10 -213.33 -1.73 11.62 16 31 H 0.41 4.41 6.52 -92.71 -0.60 3.80 16 32 H 0.07 1.38 7.58 -2.39 -0.02 1.37 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -78.71 345.39 -0.86 -79.56 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -2.72 Total: 18.62 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 4.22 Total: 5.58 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -4.27 Total: -101.11 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -0.12 Total: -47.21 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -78.71 -0.86 -79.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292021949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.392 kcal (2) G-P(sol) polarization free energy of solvation -78.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds