Wall clock time and date at job start Tue Mar 31 2020 06:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46924 * 120.62625 * 359.72047 * 13 11 10 15 15 C 1.53625 * 108.54105 * 126.37129 * 14 13 11 16 16 C 1.53040 * 109.24190 * 54.85373 * 15 14 13 17 17 C 1.53037 * 109.53834 * 298.50932 * 16 15 14 18 18 H 1.09001 * 109.52607 * 301.40212 * 17 16 15 19 19 C 1.53002 * 109.49697 * 181.31718 * 17 16 15 20 20 N 1.46509 * 109.46753 * 175.16098 * 19 17 16 21 21 C 1.34785 * 119.99460 * 180.02562 * 20 19 17 22 22 N 1.34778 * 119.99275 * 180.02562 * 21 20 19 23 23 O 1.21582 * 120.00073 * 0.02562 * 21 20 19 24 24 C 1.46923 * 120.63216 * 180.02562 * 13 11 10 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 29 29 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 30 30 H 1.09001 * 109.58518 * 246.19993 * 14 13 11 31 31 H 1.08992 * 109.58794 * 6.62532 * 14 13 11 32 32 H 1.08997 * 109.63661 * 294.86347 * 15 14 13 33 33 H 1.09001 * 109.45958 * 174.73545 * 15 14 13 34 34 H 1.09000 * 109.45714 * 178.49074 * 16 15 14 35 35 H 1.08997 * 109.44930 * 58.52559 * 16 15 14 36 36 H 1.08996 * 109.47513 * 295.16115 * 19 17 16 37 37 H 1.08997 * 109.46957 * 55.16859 * 19 17 16 38 38 H 0.96998 * 120.00431 * 0.02562 * 20 19 17 39 39 H 0.96998 * 120.00616 * 0.02562 * 22 21 20 40 40 H 0.97004 * 119.99434 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.58694 * 353.37254 * 24 13 11 42 42 H 1.08997 * 109.58854 * 113.79558 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2789 -4.9672 0.0010 13 7 2.1656 -6.1344 -0.0003 14 6 3.6348 -6.1505 -0.0075 15 6 4.1196 -7.0166 1.1650 16 6 3.4756 -8.4016 1.0690 17 6 1.9544 -8.2667 1.1672 18 1 1.6913 -7.7869 2.1099 19 6 1.3135 -9.6546 1.1041 20 7 -0.1316 -9.5351 1.3137 21 6 -0.9078 -10.6369 1.3005 22 7 -2.2372 -10.5269 1.4929 23 8 -0.4086 -11.7300 1.1152 24 6 1.4451 -7.4148 -0.0003 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.8719 -3.6044 -0.8906 29 1 2.8719 -3.6044 0.8894 30 1 3.9909 -6.5713 -0.9479 31 1 4.0119 -5.1343 0.1065 32 1 3.8366 -6.5484 2.1077 33 1 5.2041 -7.1158 1.1191 34 1 3.8380 -9.0278 1.8843 35 1 3.7389 -8.8590 0.1153 36 1 1.5034 -10.0985 0.1269 37 1 1.7420 -10.2883 1.8805 38 1 -0.5297 -8.6631 1.4619 39 1 -2.6355 -9.6548 1.6403 40 1 -2.7959 -11.3199 1.4830 41 1 0.3769 -7.2330 0.1186 42 1 1.6266 -7.9363 -0.9400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292222073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:33 Heat of formation + Delta-G solvation = -90.970363 kcal Electronic energy + Delta-G solvation = -22398.529906 eV Core-core repulsion = 18991.492014 eV Total energy + Delta-G solvation = -3407.037892 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31491 -39.66756 -37.58347 -35.14465 -33.88428 -33.51973 -32.64486 -31.41891 -30.66571 -26.76349 -25.82414 -24.73191 -22.51221 -21.70811 -21.17132 -20.34327 -18.60106 -18.31010 -17.50259 -17.01069 -16.05961 -15.89846 -15.26606 -15.15869 -15.13244 -14.68460 -14.46850 -14.35706 -13.95086 -13.42285 -13.29397 -13.10308 -12.84184 -12.29495 -12.11369 -11.98068 -11.33294 -11.23092 -11.09105 -10.93133 -10.88310 -10.76105 -10.61732 -10.48351 -9.98554 -9.92583 -9.63708 -9.23085 -9.21035 -9.02843 -8.46566 -8.33285 -5.98421 -4.02908 2.71348 3.02330 3.15463 3.22452 3.32519 3.37527 3.39164 4.26795 4.42214 4.45302 4.54741 4.60298 4.84073 5.01689 5.14824 5.25518 5.35478 5.36522 5.42105 5.47800 5.54538 5.68063 5.69944 5.83333 5.87322 5.94503 6.13758 6.17623 6.18619 6.25233 6.48793 6.68089 6.69667 6.87384 7.70133 7.71549 7.73173 7.83167 8.04382 8.35801 8.41732 8.69284 9.05242 9.60668 11.12493 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.024363 B = 0.003240 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.989731 B = 8640.713879 C = 9609.613904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.129 4.129 11 C 0.513 3.487 12 O -0.536 6.536 13 N -0.625 5.625 14 C 0.107 3.893 15 C -0.134 4.134 16 C -0.110 4.110 17 C -0.115 4.115 18 H 0.082 0.918 19 C 0.146 3.854 20 N -0.745 5.745 21 C 0.706 3.294 22 N -0.869 5.869 23 O -0.600 6.600 24 C 0.116 3.884 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.401 0.599 39 H 0.399 0.601 40 H 0.414 0.586 41 H 0.089 0.911 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 -19.100 3.118 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.304 3.696 12 O -0.411 6.411 13 N -0.361 5.361 14 C -0.017 4.017 15 C -0.173 4.173 16 C -0.148 4.148 17 C -0.135 4.135 18 H 0.101 0.899 19 C 0.021 3.979 20 N -0.402 5.402 21 C 0.404 3.596 22 N -0.436 5.436 23 O -0.479 6.479 24 C -0.007 4.007 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.235 0.765 39 H 0.227 0.773 40 H 0.245 0.755 41 H 0.107 0.893 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.346 -19.798 2.936 20.481 hybrid contribution -0.120 1.408 0.152 1.422 sum 4.226 -18.389 3.088 19.119 Atomic orbital electron populations 1.69986 1.06062 1.26712 1.50084 1.25023 0.94826 0.99218 0.95275 0.86653 0.79557 0.83170 0.78554 1.21279 1.20242 1.20240 1.21180 0.92874 0.91022 1.51552 0.92676 1.18895 0.93155 0.89372 0.98543 1.21882 1.00737 0.91948 1.02271 1.21602 0.88404 0.85500 0.74106 1.90643 1.14422 1.87196 1.48877 1.48286 1.06585 1.05649 1.75552 1.21815 0.79953 1.01826 0.98074 1.21991 1.00387 0.95491 0.99411 1.21466 0.93269 0.97441 1.02594 1.21822 0.96413 0.94834 1.00460 0.89920 1.21218 0.78237 0.96299 1.02098 1.45180 1.08326 1.08665 1.78005 1.15959 0.81635 0.84429 0.77594 1.43004 1.06934 1.13360 1.80351 1.90958 1.73567 1.25849 1.57505 1.21510 0.98181 0.84003 0.97005 0.92884 0.95901 0.95875 0.90277 0.90263 0.91644 0.88882 0.91200 0.90530 0.91350 0.91354 0.91301 0.91236 0.76485 0.77326 0.75464 0.89297 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 10 C -0.13 -2.55 3.98 -27.89 -0.11 -2.66 16 11 C 0.51 9.62 7.70 -10.98 -0.08 9.54 16 12 O -0.54 -12.12 15.40 5.56 0.09 -12.04 16 13 N -0.63 -8.60 2.97 -172.49 -0.51 -9.11 16 14 C 0.11 1.11 6.37 -3.49 -0.02 1.09 16 15 C -0.13 -1.11 6.10 -26.39 -0.16 -1.27 16 16 C -0.11 -0.84 5.16 -26.69 -0.14 -0.97 16 17 C -0.12 -1.04 2.38 -90.48 -0.22 -1.26 16 18 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 19 C 0.15 1.35 5.07 -4.04 -0.02 1.32 16 20 N -0.74 -7.04 5.34 -65.22 -0.35 -7.39 16 21 C 0.71 7.92 8.84 -86.91 -0.77 7.15 16 22 N -0.87 -6.34 8.88 27.64 0.25 -6.10 16 23 O -0.60 -9.26 17.18 5.29 0.09 -9.17 16 24 C 0.12 1.36 5.52 -3.69 -0.02 1.33 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.02 0.66 8.10 -51.92 -0.42 0.24 16 27 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 28 H 0.08 1.44 7.93 -51.93 -0.41 1.03 16 29 H 0.08 1.43 7.70 -51.93 -0.40 1.03 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.99 5.93 -51.93 -0.31 0.69 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.40 3.31 7.71 -40.82 -0.31 3.00 16 39 H 0.40 1.98 8.84 -40.82 -0.36 1.62 16 40 H 0.41 2.55 8.93 -40.82 -0.36 2.18 16 41 H 0.09 1.18 6.21 -51.93 -0.32 0.86 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 342.63 15.07 5.16 5.16 Total: -1.00 -36.49 342.63 -8.30 -44.79 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.67 Total: 2.22 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.07 Total: 1.66 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.12 Total: -49.00 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.18 Total: -21.21 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.49 -8.30 -44.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292222073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.181 kcal (2) G-P(sol) polarization free energy of solvation -36.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds