Wall clock time and date at job start Tue Mar 31 2020 05:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00199 * 2 1 4 4 N 1.46502 * 109.47165 * 123.01309 * 3 2 1 5 5 C 1.46495 * 120.00217 * 277.38264 * 4 3 2 6 6 C 1.50702 * 109.47061 * 270.00335 * 5 4 3 7 7 H 1.07991 * 120.00029 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99703 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99443 * 179.97438 * 8 6 5 10 10 Si 1.86792 * 120.00162 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.46929 * 90.00381 * 10 8 6 12 12 H 1.48498 * 109.47100 * 209.99869 * 10 8 6 13 13 H 1.48494 * 109.47382 * 330.00430 * 10 8 6 14 14 C 1.34780 * 119.99705 * 97.38648 * 4 3 2 15 15 O 1.21277 * 119.99550 * 185.00549 * 14 4 3 16 16 C 1.50701 * 119.99936 * 5.00197 * 14 4 3 17 17 O 1.42895 * 109.61542 * 304.55034 * 16 14 4 18 18 C 1.42897 * 114.00340 * 295.23116 * 17 16 14 19 19 C 1.53199 * 109.53825 * 184.33073 * 16 14 4 20 20 C 1.53088 * 109.14866 * 183.15873 * 19 16 14 21 21 O 1.42904 * 109.42405 * 57.60841 * 20 19 16 22 22 C 1.42900 * 114.09563 * 298.83402 * 21 20 19 23 23 C 1.53090 * 109.41529 * 61.15903 * 22 21 20 24 24 H 1.07999 * 120.00352 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00077 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99649 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46452 * 3.01410 * 3 2 1 28 28 H 1.08997 * 109.46967 * 243.01514 * 3 2 1 29 29 H 1.09004 * 109.47463 * 29.99759 * 5 4 3 30 30 H 1.09000 * 109.47475 * 150.00335 * 5 4 3 31 31 H 0.96998 * 119.99846 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47106 * 298.18928 * 18 17 16 33 33 H 1.08996 * 109.46885 * 58.19076 * 18 17 16 34 34 H 1.09003 * 109.47125 * 178.18931 * 18 17 16 35 35 H 1.09011 * 109.53380 * 63.25616 * 19 16 14 36 36 H 1.08998 * 109.52089 * 303.06090 * 19 16 14 37 37 H 1.09001 * 109.48332 * 297.61922 * 20 19 16 38 38 H 1.09003 * 109.48184 * 177.59608 * 20 19 16 39 39 H 1.09000 * 109.47729 * 181.14058 * 22 21 20 40 40 H 1.09002 * 109.48182 * 301.16402 * 22 21 20 41 41 H 1.09001 * 109.52192 * 62.29473 * 23 22 21 42 42 H 1.09005 * 109.52244 * 182.48159 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9594 1.3517 1.1582 5 6 2.4425 1.7547 2.4684 6 6 2.5753 3.2478 2.6232 7 1 3.0023 3.8375 1.8257 8 6 2.1514 3.8610 3.7832 9 7 2.2678 5.1640 3.9185 10 14 1.4120 2.8411 5.1624 11 1 2.4896 2.3994 6.0839 12 1 0.4261 3.6614 5.9109 13 1 0.7327 1.6516 4.5890 14 6 4.2592 1.0239 1.0183 15 8 4.9803 0.9744 1.9922 16 6 4.8165 0.7189 -0.3482 17 8 4.0514 -0.3234 -0.9566 18 6 4.1367 -1.5785 -0.2789 19 6 6.2767 0.2739 -0.2184 20 6 6.8573 0.0425 -1.6159 21 8 6.7390 1.2416 -2.3842 22 6 5.3927 1.6796 -2.5786 23 6 4.7531 1.9769 -1.2199 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3563 2.1328 0.0540 28 1 2.6490 1.3865 -0.9158 29 1 1.3923 1.4733 2.5469 30 1 3.0119 1.2560 3.2527 31 1 1.9693 5.5955 4.7343 32 1 5.1696 -1.9265 -0.2872 33 1 3.8020 -1.4584 0.7515 34 1 3.5034 -2.3079 -0.7839 35 1 6.3260 -0.6522 0.3544 36 1 6.8498 1.0490 0.2904 37 1 6.3093 -0.7605 -2.1088 38 1 7.9085 -0.2331 -1.5318 39 1 5.3889 2.5834 -3.1878 40 1 4.8256 0.8980 -3.0843 41 1 5.2955 2.7864 -0.7313 42 1 3.7127 2.2688 -1.3631 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293635199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:23 Heat of formation + Delta-G solvation = -86.633847 kcal Electronic energy + Delta-G solvation = -24520.337217 eV Core-core repulsion = 21081.194619 eV Total energy + Delta-G solvation = -3439.142597 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85838 -38.37746 -36.91737 -35.87156 -33.16017 -32.64282 -32.04808 -31.17538 -28.46992 -26.97961 -25.92443 -24.95686 -23.63083 -22.36186 -20.42645 -19.81403 -18.73562 -17.10919 -16.96182 -16.80003 -16.08048 -15.98580 -15.37103 -15.16685 -14.72483 -14.56182 -14.21384 -14.07169 -13.61955 -12.94055 -12.87233 -12.79649 -12.65864 -12.40663 -12.24894 -11.68537 -11.61272 -11.56828 -11.23695 -11.08435 -10.96510 -10.81461 -10.57006 -10.47430 -10.15902 -10.01412 -9.70913 -9.56013 -9.13686 -8.72504 -8.61685 -7.78900 -6.11865 -4.10851 2.45880 3.03535 3.26974 3.33090 3.34998 3.66485 3.76511 3.92070 4.37059 4.61641 4.77082 4.82402 4.96048 5.19540 5.21323 5.23422 5.25953 5.33696 5.36121 5.43545 5.48568 5.54138 5.62177 5.65364 5.70212 5.79277 5.95918 6.08047 6.15605 6.22420 6.24567 6.64769 6.81559 6.90068 6.92688 7.00234 7.16629 7.33381 7.57680 8.16508 8.42517 8.81383 8.91524 9.48378 11.01310 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.006133 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.853571 B = 4564.338628 C = 5108.539307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C 0.125 3.875 4 N -0.575 5.575 5 C 0.214 3.786 6 C -0.530 4.530 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.492 3.508 15 O -0.536 6.536 16 C 0.104 3.896 17 O -0.364 6.364 18 C 0.021 3.979 19 C -0.166 4.166 20 C 0.067 3.933 21 O -0.383 6.383 22 C 0.067 3.933 23 C -0.150 4.150 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.035 0.965 31 H 0.265 0.735 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 -12.635 -13.283 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.174 4.174 3 C 0.002 3.998 4 N -0.306 5.306 5 C 0.094 3.906 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.278 3.722 15 O -0.414 6.414 16 C 0.061 3.939 17 O -0.283 6.283 18 C -0.075 4.075 19 C -0.204 4.204 20 C -0.009 4.009 21 O -0.302 6.302 22 C -0.009 4.009 23 C -0.187 4.187 24 H 0.116 0.884 25 H 0.111 0.889 26 H 0.125 0.875 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.502 -12.359 -12.850 18.004 hybrid contribution -0.679 -0.611 1.362 1.640 sum 1.823 -12.970 -11.488 17.422 Atomic orbital electron populations 1.23819 0.95931 1.01618 1.01721 1.23431 0.95968 0.99238 0.98759 1.20977 0.93822 0.95185 0.89809 1.47865 1.07615 1.64061 1.11010 1.19682 0.94189 0.96539 0.80192 1.21303 1.41813 0.90226 1.03479 0.90692 1.24837 0.95269 0.94826 0.97944 1.69893 1.47312 1.08774 1.27443 0.86871 0.79566 0.80576 0.82848 1.19932 1.20986 1.19042 1.20814 0.82764 0.78212 0.90458 1.90669 1.57939 1.52468 1.40275 1.21775 0.91348 0.89442 0.91323 1.87961 1.69325 1.18635 1.52352 1.22852 1.01291 0.85627 0.97713 1.22561 0.95079 1.04183 0.98584 1.22516 1.01187 0.87198 0.90034 1.87908 1.26660 1.42786 1.72839 1.22535 0.82918 1.00119 0.95353 1.22517 1.03977 0.95541 0.96706 0.88396 0.88946 0.87544 0.90049 0.88318 0.95118 0.94670 0.92526 0.93469 0.93574 0.89342 0.89957 0.88943 0.92796 0.88835 0.88563 0.92167 0.88822 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 14.32 29.02 0.42 -2.12 16 2 C -0.15 -2.24 9.15 -36.02 -0.33 -2.57 16 3 C 0.12 2.07 4.98 -5.19 -0.03 2.04 16 4 N -0.58 -11.87 2.45 -176.43 -0.43 -12.30 16 5 C 0.21 5.29 4.28 -5.20 -0.02 5.26 16 6 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 7 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 8 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 9 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 10 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 14 C 0.49 9.98 5.46 -10.98 -0.06 9.92 16 15 O -0.54 -12.98 15.49 5.56 0.09 -12.89 16 16 C 0.10 1.59 0.27 -91.58 -0.02 1.57 16 17 O -0.36 -4.81 6.64 -35.23 -0.23 -5.04 16 18 C 0.02 0.25 8.48 101.05 0.86 1.10 16 19 C -0.17 -2.34 3.85 -26.58 -0.10 -2.45 16 20 C 0.07 0.79 6.69 37.20 0.25 1.04 16 21 O -0.38 -5.09 10.77 -35.23 -0.38 -5.47 16 22 C 0.07 0.80 6.69 37.20 0.25 1.05 16 23 C -0.15 -2.13 4.80 -26.59 -0.13 -2.26 16 24 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 25 H 0.09 1.04 8.06 -52.49 -0.42 0.62 16 26 H 0.11 1.45 5.50 -52.49 -0.29 1.16 16 27 H 0.08 1.41 7.77 -51.93 -0.40 1.00 16 28 H 0.10 1.45 3.32 -51.93 -0.17 1.28 16 29 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 30 H 0.04 0.93 6.79 -51.93 -0.35 0.58 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.05 0.49 6.39 -51.93 -0.33 0.16 16 33 H 0.05 0.63 6.95 -51.93 -0.36 0.27 16 34 H 0.09 0.80 8.12 -51.93 -0.42 0.38 16 35 H 0.08 1.12 6.37 -51.92 -0.33 0.79 16 36 H 0.09 1.48 7.97 -51.93 -0.41 1.07 16 37 H 0.05 0.57 7.82 -51.93 -0.41 0.17 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 41 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.10 1.33 5.24 -51.93 -0.27 1.06 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -33.37 325.77 -5.53 -38.90 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.22 Total: 2.48 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 0.64 Total: -0.87 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.34 Total: -39.05 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.53 Total: -23.40 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.37 -5.53 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293635199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.734 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds