Wall clock time and date at job start Tue Mar 31 2020 06:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46582 * 2 1 4 4 C 1.53005 * 109.47129 * 119.99680 * 2 1 3 5 5 C 1.50694 * 109.46900 * 185.00341 * 4 2 1 6 6 H 1.07996 * 120.00336 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99827 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00186 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00105 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46763 * 59.99976 * 9 7 5 11 11 H 1.48499 * 109.47160 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47028 * 300.00346 * 9 7 5 13 13 N 1.46898 * 109.47358 * 239.99681 * 2 1 3 14 14 C 1.46897 * 110.99570 * 84.99894 * 13 2 1 15 15 H 1.09004 * 109.47222 * 324.99808 * 14 13 2 16 16 C 1.52993 * 109.47255 * 85.00248 * 14 13 2 17 17 C 1.50699 * 109.46789 * 205.00280 * 14 13 2 18 18 C 1.36130 * 120.17535 * 339.99699 * 17 14 13 19 19 C 1.39329 * 120.99258 * 180.02562 * 18 17 14 20 20 C 1.36125 * 120.98923 * 359.97438 * 19 18 17 21 21 C 1.40501 * 119.65263 * 0.02562 * 20 19 18 22 22 C 1.40557 * 121.28769 * 179.97438 * 21 20 19 23 23 C 1.36081 * 119.65010 * 180.02562 * 22 21 20 24 24 C 1.39383 * 120.99897 * 0.02562 * 23 22 21 25 25 C 1.36094 * 120.98995 * 359.95151 * 24 23 22 26 26 C 1.40507 * 120.17537 * 160.02451 * 17 14 13 27 27 H 1.09002 * 109.47221 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47292 * 299.99826 * 1 2 3 29 29 H 1.08996 * 109.47397 * 60.00429 * 1 2 3 30 30 H 1.09001 * 109.47295 * 305.00161 * 4 2 1 31 31 H 1.08994 * 109.47139 * 64.99813 * 4 2 1 32 32 H 0.97000 * 120.00493 * 179.97438 * 8 7 5 33 33 H 1.00903 * 110.99623 * 321.04818 * 13 2 1 34 34 H 1.09001 * 109.47258 * 299.99807 * 16 14 13 35 35 H 1.09004 * 109.47365 * 59.99647 * 16 14 13 36 36 H 1.09001 * 109.47196 * 179.97438 * 16 14 13 37 37 H 1.08000 * 119.50240 * 0.02562 * 18 17 14 38 38 H 1.07998 * 119.50912 * 179.97438 * 19 18 17 39 39 H 1.07998 * 120.17668 * 179.72489 * 20 19 18 40 40 H 1.07996 * 120.17067 * 0.04551 * 22 21 20 41 41 H 1.08000 * 119.50492 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.50833 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.16912 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.6148 1.3128 6 1 4.0789 -0.0853 0.5397 7 6 4.2303 -1.1924 2.3584 8 7 3.5764 -1.8367 3.3001 9 14 6.0921 -1.0611 2.4368 10 1 6.4853 0.3697 2.4952 11 1 6.5871 -1.7610 3.6494 12 1 6.6839 -1.6881 1.2277 13 7 2.0197 -0.6925 -1.1994 14 6 2.0825 0.2225 -2.3468 15 1 1.2575 0.9328 -2.2906 16 6 3.4110 0.9808 -2.3223 17 6 1.9786 -0.5677 -3.6257 18 6 2.2550 -1.9007 -3.6308 19 6 2.1649 -2.6476 -4.8035 20 6 1.7974 -2.0663 -5.9782 21 6 1.5043 -0.6926 -6.0123 22 6 1.1221 -0.0571 -7.2063 23 6 0.8463 1.2754 -7.2012 24 6 0.9374 2.0229 -6.0283 25 6 1.3039 1.4416 -4.8536 26 6 1.5965 0.0674 -4.8194 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7516 -1.7714 1.2057 32 1 4.0607 -2.2434 4.0356 33 1 1.4495 -1.4980 -1.4099 34 1 3.4862 1.5525 -1.3972 35 1 4.2359 0.2705 -2.3785 36 1 3.4578 1.6595 -3.1740 37 1 2.5485 -2.3865 -2.7120 38 1 2.3901 -3.7036 -4.7802 39 1 1.7362 -2.6568 -6.8804 40 1 1.0473 -0.6235 -8.1227 41 1 0.5524 1.7613 -8.1199 42 1 0.7134 3.0792 -6.0519 43 1 1.3698 2.0334 -3.9526 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299566195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:01 Heat of formation + Delta-G solvation = 32.383998 kcal Electronic energy + Delta-G solvation = -21903.066741 eV Core-core repulsion = 18912.227159 eV Total energy + Delta-G solvation = -2990.839582 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.56225 -37.60519 -36.13459 -33.98171 -32.34422 -30.95263 -30.31679 -28.70399 -27.88600 -27.14196 -23.77391 -23.14505 -22.92485 -22.42749 -19.90503 -19.62429 -17.38282 -16.92816 -16.42834 -16.07378 -15.14307 -14.78284 -14.33285 -14.17577 -13.95314 -13.82322 -13.40059 -13.35324 -12.89669 -12.68463 -12.43458 -12.09694 -11.83630 -11.73180 -11.66746 -11.39792 -11.28159 -11.18565 -10.99091 -10.83633 -10.54570 -10.49822 -10.24911 -9.95964 -9.78823 -9.22628 -8.95596 -8.57951 -8.21806 -7.80110 -7.58739 -5.84316 -3.81608 0.54862 1.04515 2.07050 3.03211 3.42925 3.46783 3.50266 4.13624 4.52100 4.59533 4.67600 4.83783 4.87787 4.99878 5.08344 5.16189 5.37099 5.41971 5.45700 5.52928 5.61024 5.73711 5.78879 5.83950 5.91236 5.96072 6.00484 6.10946 6.16313 6.24206 6.31135 6.33125 6.43361 6.48435 6.60871 6.64789 6.71120 6.76104 6.85043 7.05880 7.07577 7.59696 7.72231 8.04574 8.08454 8.19798 8.64041 9.23716 9.79511 11.27876 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.004071 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.288557 B = 6875.713143 C = 7105.138395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.065 0.935 4 C 0.034 3.966 5 C -0.487 4.487 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.658 5.658 14 C 0.122 3.878 15 H 0.046 0.954 16 C -0.133 4.133 17 C -0.065 4.065 18 C -0.109 4.109 19 C -0.106 4.106 20 C -0.122 4.122 21 C -0.052 4.052 22 C -0.109 4.109 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.101 4.101 26 C -0.045 4.045 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.257 0.743 33 H 0.333 0.667 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.141 0.859 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.381 3.946 -20.064 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.084 0.916 4 C -0.003 4.003 5 C -0.525 4.525 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.289 5.289 14 C 0.012 3.988 15 H 0.064 0.936 16 C -0.190 4.190 17 C -0.066 4.066 18 C -0.127 4.127 19 C -0.124 4.124 20 C -0.140 4.140 21 C -0.052 4.052 22 C -0.127 4.127 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.119 4.119 26 C -0.046 4.046 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.159 0.841 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.678 3.932 -19.725 20.899 hybrid contribution 0.092 0.050 -0.135 0.171 sum -5.586 3.982 -19.860 21.012 Atomic orbital electron populations 1.22565 0.99595 1.01222 1.00567 1.21840 0.89770 0.98269 0.92179 0.91639 1.19091 0.96233 0.95338 0.89623 1.21123 0.91865 1.32807 1.06727 0.92268 1.24995 0.97835 0.95993 0.96079 1.69950 1.35225 1.37054 1.12396 0.86729 0.86615 0.77924 0.77073 1.20590 1.21703 1.20402 1.60761 1.57816 1.08294 1.02078 1.20399 0.97648 0.93497 0.87206 0.93625 1.21776 0.96744 0.99525 1.00990 1.19962 0.97966 0.94446 0.94181 1.20982 0.98772 0.93863 0.99055 1.20924 0.98736 1.00090 0.92674 1.20956 1.01132 0.93526 0.98357 1.18058 1.00211 0.93847 0.93079 1.20980 0.99854 0.95024 0.96883 1.20798 1.00630 0.94347 0.98132 1.20819 1.00691 0.99944 0.92834 1.21149 0.98427 0.93845 0.98492 1.17946 1.00151 0.93667 0.92797 0.93051 0.92455 0.94482 0.96538 0.96559 0.93341 0.84796 0.91720 0.91714 0.93491 0.84085 0.85980 0.85995 0.85924 0.86344 0.86235 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 9.15 37.16 0.34 -2.71 16 2 C 0.09 1.76 2.34 -67.71 -0.16 1.60 16 3 H 0.07 1.32 7.11 -51.93 -0.37 0.95 16 4 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16 5 C -0.49 -13.55 8.84 -34.44 -0.30 -13.85 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.44 13.29 55.43 0.74 -26.70 16 9 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.66 -11.97 5.06 -100.96 -0.51 -12.48 16 14 C 0.12 1.91 1.98 -68.87 -0.14 1.78 16 15 H 0.05 0.70 5.97 -51.93 -0.31 0.39 16 16 C -0.13 -2.10 9.25 37.15 0.34 -1.76 16 17 C -0.07 -0.96 5.00 -104.53 -0.52 -1.48 16 18 C -0.11 -1.56 8.81 -39.93 -0.35 -1.91 16 19 C -0.11 -1.31 9.95 -39.94 -0.40 -1.70 16 20 C -0.12 -1.42 9.77 -39.49 -0.39 -1.80 16 21 C -0.05 -0.66 5.74 -106.83 -0.61 -1.27 16 22 C -0.11 -1.16 9.77 -39.48 -0.39 -1.55 16 23 C -0.12 -1.20 9.95 -39.93 -0.40 -1.60 16 24 C -0.12 -1.32 9.95 -39.93 -0.40 -1.72 16 25 C -0.10 -1.25 8.72 -39.48 -0.34 -1.59 16 26 C -0.05 -0.62 5.74 -106.83 -0.61 -1.24 16 27 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.56 7.43 -51.93 -0.39 0.17 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.33 5.78 6.71 -39.29 -0.26 5.51 16 34 H 0.06 1.09 7.43 -51.93 -0.39 0.70 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.64 7.22 -51.93 -0.38 0.27 16 37 H 0.14 2.13 6.63 -52.49 -0.35 1.78 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 43 H 0.13 1.49 6.18 -52.49 -0.32 1.16 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -30.65 345.98 -10.66 -41.32 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.53 Total: 4.25 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -4.55 Total: -28.72 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.23 Total: -39.19 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.65 -10.66 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299566195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.701 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds