Wall clock time and date at job start Tue Mar 31 2020 06:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47310 * 2 1 4 4 C 1.53001 * 109.47491 * 240.00122 * 2 1 3 5 5 C 1.50696 * 109.47404 * 175.00386 * 4 2 1 6 6 H 1.07997 * 120.00406 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99970 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99925 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47146 * 90.00116 * 9 7 5 11 11 H 1.48504 * 109.47305 * 209.99643 * 9 7 5 12 12 H 1.48500 * 109.47543 * 330.00135 * 9 7 5 13 13 N 1.46903 * 109.47294 * 120.00259 * 2 1 3 14 14 C 1.46905 * 110.99825 * 265.81087 * 13 2 1 15 15 H 1.09000 * 109.47202 * 338.18641 * 14 13 2 16 16 C 1.53003 * 109.47163 * 98.18140 * 14 13 2 17 17 C 1.50696 * 109.47072 * 218.18186 * 14 13 2 18 18 C 1.36129 * 120.17040 * 340.00157 * 17 14 13 19 19 C 1.39331 * 120.98718 * 180.02562 * 18 17 14 20 20 C 1.36133 * 120.99326 * 0.02562 * 19 18 17 21 21 C 1.40501 * 119.64741 * 359.97438 * 20 19 18 22 22 C 1.40546 * 121.28740 * 180.02562 * 21 20 19 23 23 C 1.36092 * 119.65240 * 179.97438 * 22 21 20 24 24 C 1.39377 * 120.99741 * 0.02562 * 23 22 21 25 25 C 1.36098 * 120.99038 * 359.95551 * 24 23 22 26 26 C 1.40500 * 120.17581 * 160.01924 * 17 14 13 27 27 H 1.08998 * 109.47512 * 185.85067 * 1 2 3 28 28 H 1.08999 * 109.47141 * 305.85490 * 1 2 3 29 29 H 1.09008 * 109.47133 * 65.84866 * 1 2 3 30 30 H 1.09005 * 109.46959 * 295.00538 * 4 2 1 31 31 H 1.09001 * 109.46891 * 54.99894 * 4 2 1 32 32 H 0.96999 * 120.00020 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99805 * 29.75806 * 13 2 1 34 34 H 1.08999 * 109.46954 * 54.17583 * 16 14 13 35 35 H 1.09000 * 109.46886 * 174.17275 * 16 14 13 36 36 H 1.08995 * 109.47332 * 294.17651 * 16 14 13 37 37 H 1.07998 * 119.50903 * 0.04090 * 18 17 14 38 38 H 1.08004 * 119.50553 * 180.02562 * 19 18 17 39 39 H 1.07997 * 120.17844 * 179.70278 * 20 19 18 40 40 H 1.07995 * 120.17328 * 359.92437 * 22 21 20 41 41 H 1.08006 * 119.49841 * 179.97438 * 23 22 21 42 42 H 1.07992 * 119.50524 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.16985 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0856 -0.5395 7 6 4.2304 -1.1927 -2.3583 8 7 3.5764 -1.8369 -3.3000 9 14 6.0919 -1.0603 -2.4373 10 1 6.7007 -2.2130 -1.7260 11 1 6.5290 -1.0677 -3.8565 12 1 6.5262 0.2048 -1.7922 13 7 2.0197 -0.6926 1.1994 14 6 2.2896 0.2605 2.2843 15 1 2.4421 1.2549 1.8647 16 6 1.0996 0.2896 3.2455 17 6 3.5277 -0.1652 3.0304 18 6 3.9694 -1.4501 2.9462 19 6 5.1117 -1.8623 3.6293 20 6 5.8191 -0.9922 4.4011 21 6 5.3939 0.3423 4.5123 22 6 6.0983 1.2697 5.2991 23 6 5.6570 2.5544 5.3827 24 6 4.5143 2.9667 4.6995 25 6 3.8070 2.0968 3.9279 26 6 4.2321 0.7618 3.8168 27 1 -0.3634 -1.0223 0.1048 28 1 -0.3633 0.6019 0.8329 29 1 -0.3634 0.4205 -0.9378 30 1 1.7516 -1.7715 -1.2056 31 1 1.6054 -0.2617 -2.1369 32 1 4.0607 -2.2436 -4.0354 33 1 1.3692 -1.4042 1.4969 34 1 0.8822 -0.7230 3.5853 35 1 1.3410 0.9168 4.1037 36 1 0.2279 0.6956 2.7324 37 1 3.4263 -2.1607 2.3407 38 1 5.4409 -2.8875 3.5452 39 1 6.6999 -1.3269 4.9287 40 1 6.9847 0.9643 5.8351 41 1 6.2000 3.2649 5.9884 42 1 4.1854 3.9919 4.7833 43 1 2.9236 2.4307 3.4039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299566198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:05 Heat of formation + Delta-G solvation = 33.346581 kcal Electronic energy + Delta-G solvation = -22149.450356 eV Core-core repulsion = 19158.652514 eV Total energy + Delta-G solvation = -2990.797841 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.33774 -37.55536 -36.01644 -33.92874 -32.33919 -30.94428 -30.08377 -28.60377 -27.71202 -27.21370 -23.60763 -23.02437 -22.76925 -22.49765 -20.03213 -19.66974 -17.22606 -16.75576 -16.20846 -15.99374 -14.88891 -14.80241 -14.27726 -14.13523 -13.87530 -13.50469 -13.41579 -13.19647 -12.94932 -12.64134 -12.48115 -12.23077 -12.00067 -11.70402 -11.58114 -11.41083 -11.31111 -11.04697 -10.89348 -10.67966 -10.58908 -10.49766 -10.19863 -10.00066 -9.55547 -9.23853 -8.91829 -8.35435 -8.20617 -7.61204 -7.55941 -5.83470 -3.80236 0.75734 1.26552 2.28632 3.25255 3.42636 3.48230 3.53528 4.33742 4.60625 4.61475 4.80558 4.98365 5.05416 5.15203 5.26917 5.35073 5.38273 5.42781 5.53735 5.55790 5.61294 5.73252 5.74402 5.81955 5.86706 5.96010 6.03270 6.09463 6.20043 6.26752 6.34974 6.43221 6.46331 6.52450 6.60519 6.64298 6.84293 6.99535 7.05734 7.08107 7.30699 7.60058 7.72360 8.05854 8.09153 8.20038 8.65258 9.25188 9.81038 11.28688 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013949 B = 0.005794 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.842973 B = 4831.086142 C = 5866.651042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.090 3.910 3 H 0.061 0.939 4 C 0.034 3.966 5 C -0.483 4.483 6 H 0.056 0.944 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.885 3.115 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.657 5.657 14 C 0.121 3.879 15 H 0.081 0.919 16 C -0.174 4.174 17 C -0.053 4.053 18 C -0.084 4.084 19 C -0.108 4.108 20 C -0.125 4.125 21 C -0.054 4.054 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.102 4.102 26 C -0.045 4.045 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.017 0.983 31 H 0.015 0.985 32 H 0.256 0.744 33 H 0.332 0.668 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 5.380 17.834 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.019 4.019 3 H 0.079 0.921 4 C -0.003 4.003 5 C -0.522 4.522 6 H 0.075 0.925 7 C -0.148 4.148 8 N -0.546 5.546 9 Si 0.714 3.286 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.287 5.287 14 C 0.011 3.989 15 H 0.099 0.901 16 C -0.232 4.232 17 C -0.054 4.054 18 C -0.103 4.103 19 C -0.126 4.126 20 C -0.143 4.143 21 C -0.054 4.054 22 C -0.126 4.126 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.120 4.120 26 C -0.046 4.046 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.066 0.934 33 H 0.151 0.849 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.156 0.844 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.469 5.273 17.435 18.221 hybrid contribution 0.304 0.218 0.079 0.382 sum -0.165 5.492 17.514 18.356 Atomic orbital electron populations 1.22601 0.99173 1.00977 1.00937 1.21909 0.90076 0.97647 0.92247 0.92057 1.19117 0.96153 0.95471 0.89593 1.21122 0.91894 1.32594 1.06588 0.92538 1.24966 0.97727 0.96032 0.96085 1.69961 1.35035 1.37190 1.12416 0.86696 0.86839 0.78376 0.76671 1.20913 1.21654 1.20142 1.60521 1.51069 1.13350 1.03722 1.20468 0.91021 0.96504 0.90936 0.90062 1.22548 0.98385 1.02284 1.00016 1.19748 0.96471 0.93357 0.95778 1.20849 0.95826 0.96636 0.96946 1.20960 0.95514 0.99681 0.96430 1.20914 1.00154 0.92586 1.00688 1.18019 0.95193 0.94183 0.97962 1.20965 0.99378 0.93430 0.98801 1.20748 0.97110 0.96129 1.00332 1.20766 0.95984 0.99495 0.98237 1.21078 0.99809 0.92627 0.98491 1.17952 0.95061 0.93832 0.97732 0.92984 0.94274 0.92439 0.96428 0.96641 0.93432 0.84914 0.92296 0.92362 0.92291 0.84441 0.86265 0.86244 0.86096 0.86541 0.86461 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 9.23 37.16 0.34 -2.51 16 2 C 0.09 1.76 2.60 -67.71 -0.18 1.58 16 3 H 0.06 1.24 7.14 -51.93 -0.37 0.87 16 4 C 0.03 0.86 4.65 -27.88 -0.13 0.73 16 5 C -0.48 -13.66 8.84 -34.44 -0.30 -13.97 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 8 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 9 Si 0.89 22.66 29.54 -169.99 -5.02 17.64 16 10 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 N -0.66 -11.63 4.42 -100.95 -0.45 -12.07 16 14 C 0.12 1.87 2.25 -68.86 -0.16 1.71 16 15 H 0.08 1.32 5.96 -51.93 -0.31 1.01 16 16 C -0.17 -2.14 9.02 37.16 0.34 -1.81 16 17 C -0.05 -0.86 5.09 -104.53 -0.53 -1.39 16 18 C -0.08 -1.39 9.26 -39.93 -0.37 -1.76 16 19 C -0.11 -1.60 9.95 -39.93 -0.40 -1.99 16 20 C -0.13 -1.76 9.77 -39.49 -0.39 -2.14 16 21 C -0.05 -0.79 5.74 -106.83 -0.61 -1.41 16 22 C -0.11 -1.35 9.77 -39.48 -0.39 -1.73 16 23 C -0.13 -1.45 9.95 -39.93 -0.40 -1.85 16 24 C -0.13 -1.52 9.95 -39.93 -0.40 -1.92 16 25 C -0.10 -1.40 8.68 -39.48 -0.34 -1.74 16 26 C -0.05 -0.71 5.74 -106.83 -0.61 -1.32 16 27 H 0.05 0.81 8.00 -51.93 -0.42 0.39 16 28 H 0.04 0.54 6.60 -51.93 -0.34 0.19 16 29 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.33 5.34 7.72 -39.29 -0.30 5.03 16 34 H 0.06 0.70 8.01 -51.93 -0.42 0.29 16 35 H 0.06 0.68 7.30 -51.93 -0.38 0.30 16 36 H 0.06 0.69 6.60 -51.93 -0.34 0.34 16 37 H 0.14 2.33 7.07 -52.49 -0.37 1.96 16 38 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 43 H 0.12 1.54 6.26 -52.49 -0.33 1.21 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -31.36 345.94 -10.64 -42.00 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.50 Total: 4.21 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -4.62 Total: -30.12 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.29 Total: -38.95 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.36 -10.64 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299566198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.349 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds