Wall clock time and date at job start Tue Mar 31 2020 06:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47468 * 2 1 4 4 N 1.46894 * 109.47231 * 120.00778 * 2 1 3 5 5 C 1.46902 * 110.99745 * 280.79614 * 4 2 1 6 6 H 1.08994 * 109.47435 * 346.44631 * 5 4 2 7 7 C 1.53007 * 109.46790 * 106.44243 * 5 4 2 8 8 C 1.52995 * 109.47703 * 226.43900 * 5 4 2 9 9 C 1.50705 * 109.46909 * 65.00202 * 8 5 4 10 10 H 1.07995 * 119.99895 * 0.02562 * 9 8 5 11 11 C 1.37878 * 119.99693 * 180.02562 * 9 8 5 12 12 N 1.31506 * 120.00180 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99685 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46947 * 59.99778 * 13 11 9 15 15 H 1.48497 * 109.47228 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47284 * 300.00014 * 13 11 9 17 17 C 1.50707 * 109.46862 * 240.00234 * 2 1 3 18 18 C 1.36125 * 120.17110 * 265.00331 * 17 2 1 19 19 C 1.39338 * 120.98659 * 180.02562 * 18 17 2 20 20 C 1.36125 * 120.98729 * 359.97438 * 19 18 17 21 21 C 1.40499 * 119.65565 * 0.02562 * 20 19 18 22 22 C 1.40553 * 121.29046 * 179.97438 * 21 20 19 23 23 C 1.36091 * 119.65482 * 180.02562 * 22 21 20 24 24 C 1.39379 * 120.98958 * 0.02562 * 23 22 21 25 25 C 1.36084 * 120.99799 * 359.95975 * 24 23 22 26 26 C 1.40504 * 120.16981 * 85.02230 * 17 2 1 27 27 H 1.09007 * 109.46505 * 306.73197 * 1 2 3 28 28 H 1.08998 * 109.47319 * 66.72776 * 1 2 3 29 29 H 1.08998 * 109.47372 * 186.73367 * 1 2 3 30 30 H 1.00906 * 111.00551 * 156.84942 * 4 2 1 31 31 H 1.08994 * 109.47448 * 53.70907 * 7 5 4 32 32 H 1.09001 * 109.47323 * 173.70954 * 7 5 4 33 33 H 1.09007 * 109.46821 * 293.71189 * 7 5 4 34 34 H 1.09000 * 109.47635 * 185.00652 * 8 5 4 35 35 H 1.09010 * 109.47092 * 305.00455 * 8 5 4 36 36 H 0.97007 * 119.99768 * 179.97438 * 12 11 9 37 37 H 1.07993 * 119.51075 * 0.04033 * 18 17 2 38 38 H 1.07997 * 119.50719 * 179.97438 * 19 18 17 39 39 H 1.08002 * 120.17389 * 179.72853 * 20 19 18 40 40 H 1.08003 * 120.17184 * 359.97438 * 22 21 20 41 41 H 1.07995 * 119.49974 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.49855 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.17408 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.9529 0.1830 2.3770 6 1 1.7853 1.2111 2.0563 7 6 0.8013 -0.2637 3.2799 8 6 3.2700 0.0983 3.1509 9 6 4.3865 0.6532 2.3043 10 1 4.1775 1.0290 1.3137 11 6 5.6749 0.6811 2.7947 12 7 5.9295 0.2229 4.0008 13 14 7.0590 1.3682 1.7451 14 1 6.7708 2.7866 1.4128 15 1 8.3375 1.2851 2.4958 16 1 7.1690 0.5787 0.4921 17 6 2.0323 -0.7104 -1.2306 18 6 2.3569 -2.0311 -1.1735 19 6 2.8234 -2.7046 -2.3006 20 6 2.9675 -2.0614 -3.4916 21 6 2.6424 -0.6980 -3.5892 22 6 2.7786 -0.0001 -4.8016 23 6 2.4545 1.3204 -4.8584 24 6 1.9889 1.9942 -3.7307 25 6 1.8440 1.3512 -2.5401 26 6 2.1682 -0.0128 -2.4426 27 1 -0.3632 0.6147 0.8237 28 1 -0.3634 0.4060 -0.9440 29 1 -0.3634 -1.0205 0.1205 30 1 2.9568 -1.0395 1.0593 31 1 0.9099 -1.3236 3.5098 32 1 0.8203 0.3125 4.2050 33 1 -0.1468 -0.0983 2.7682 34 1 3.1890 0.6776 4.0706 35 1 3.4819 -0.9428 3.3947 36 1 6.8360 0.2422 4.3456 37 1 2.2512 -2.5651 -0.2407 38 1 3.0744 -3.7525 -2.2282 39 1 3.3344 -2.5952 -4.3559 40 1 3.1393 -0.5089 -5.6833 41 1 2.5604 1.8543 -5.7912 42 1 1.7391 3.0425 -3.8029 43 1 1.4817 1.8863 -1.6748 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299566202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:08 Heat of formation + Delta-G solvation = 26.942990 kcal Electronic energy + Delta-G solvation = -22154.772477 eV Core-core repulsion = 19163.696956 eV Total energy + Delta-G solvation = -2991.075522 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.42616 -37.48282 -36.04424 -33.94583 -32.39153 -30.88677 -30.18695 -28.60515 -28.00753 -27.23029 -23.60061 -23.07612 -22.83656 -22.44446 -19.76530 -19.52426 -17.28576 -16.82409 -16.32229 -16.19323 -15.12801 -14.72087 -14.36640 -14.30463 -13.89606 -13.74881 -13.40383 -13.24062 -12.76713 -12.54949 -12.25014 -12.07287 -11.85664 -11.74401 -11.60206 -11.32623 -11.17101 -11.10721 -10.98615 -10.79734 -10.65674 -10.48444 -10.22318 -10.15517 -9.65263 -9.22497 -9.10047 -8.45311 -8.40883 -7.69265 -7.65514 -6.04004 -4.07287 0.67521 1.17223 2.19875 3.15641 3.30801 3.35253 3.38708 4.26216 4.42818 4.62628 4.79054 4.95910 4.99128 5.10989 5.20097 5.26297 5.33450 5.49293 5.53169 5.55264 5.70513 5.75114 5.90047 5.97903 6.00119 6.11938 6.14948 6.25377 6.30143 6.35798 6.40726 6.43214 6.51260 6.56960 6.61169 6.70392 6.86875 6.90379 6.97643 6.99907 7.18532 7.50395 7.61839 7.94512 8.05201 8.25156 8.35163 8.99135 9.57698 11.06632 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.005802 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.629586 B = 4825.089447 C = 5706.300768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.123 3.877 3 H 0.051 0.949 4 N -0.677 5.677 5 C 0.086 3.914 6 H 0.040 0.960 7 C -0.133 4.133 8 C 0.013 3.987 9 C -0.524 4.524 10 H 0.050 0.950 11 C 0.063 3.937 12 N -0.891 5.891 13 Si 0.886 3.114 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.061 4.061 18 C -0.104 4.104 19 C -0.108 4.108 20 C -0.122 4.122 21 C -0.051 4.051 22 C -0.110 4.110 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.100 4.100 26 C -0.045 4.045 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.356 0.644 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.021 0.979 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.137 0.863 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.391 -1.617 -14.860 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.013 3.987 3 H 0.069 0.931 4 N -0.311 5.311 5 C -0.023 4.023 6 H 0.058 0.942 7 C -0.192 4.192 8 C -0.025 4.025 9 C -0.562 4.562 10 H 0.069 0.931 11 C -0.139 4.139 12 N -0.529 5.529 13 Si 0.714 3.286 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.061 4.061 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.140 4.140 21 C -0.051 4.051 22 C -0.128 4.128 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.118 4.118 26 C -0.045 4.045 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.177 0.823 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.155 0.845 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.837 -1.948 -14.580 17.695 hybrid contribution 1.750 1.047 -0.728 2.165 sum -8.087 -0.902 -15.308 17.336 Atomic orbital electron populations 1.21818 0.94224 1.02396 1.00628 1.20441 0.95205 0.95530 0.87566 0.93096 1.60803 1.30945 1.37558 1.01820 1.21671 0.96931 0.93228 0.90490 0.94194 1.21841 0.97581 1.01247 0.98491 1.19457 0.89740 0.97793 0.95491 1.21133 0.92686 1.41202 1.01221 0.93132 1.24960 0.98731 0.95305 0.94906 1.69946 1.20575 1.46220 1.16199 0.86747 0.81603 0.79679 0.80571 1.20322 1.21226 1.20174 1.19879 0.98018 0.94379 0.93829 1.20877 0.98010 0.94332 0.98996 1.20901 0.98780 1.00027 0.92847 1.20936 1.01443 0.93391 0.98205 1.18043 0.99789 0.94028 0.93282 1.20969 1.00462 0.94756 0.96630 1.20786 0.99895 0.94772 0.98430 1.20803 1.00553 0.99914 0.93053 1.21145 0.98976 0.93551 0.98078 1.17957 0.99727 0.93805 0.93037 0.92426 0.93221 0.91960 0.82286 0.92859 0.93534 0.94226 0.96056 0.95826 0.92899 0.84478 0.86098 0.86054 0.85971 0.86389 0.86263 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.03 37.16 0.34 -1.56 16 2 C 0.12 2.03 2.10 -68.87 -0.14 1.89 16 3 H 0.05 0.92 6.11 -51.93 -0.32 0.60 16 4 N -0.68 -12.63 5.25 -100.95 -0.53 -13.16 16 5 C 0.09 1.75 2.36 -67.71 -0.16 1.59 16 6 H 0.04 0.83 7.26 -51.93 -0.38 0.46 16 7 C -0.13 -2.35 9.47 37.16 0.35 -2.00 16 8 C 0.01 0.32 4.39 -27.88 -0.12 0.20 16 9 C -0.52 -14.36 8.24 -34.44 -0.28 -14.65 16 10 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 13 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C -0.06 -0.98 4.93 -104.52 -0.52 -1.50 16 18 C -0.10 -1.60 8.85 -39.93 -0.35 -1.95 16 19 C -0.11 -1.45 9.95 -39.93 -0.40 -1.85 16 20 C -0.12 -1.60 9.77 -39.49 -0.39 -1.98 16 21 C -0.05 -0.74 5.74 -106.83 -0.61 -1.35 16 22 C -0.11 -1.35 9.77 -39.48 -0.39 -1.73 16 23 C -0.12 -1.40 9.95 -39.93 -0.40 -1.80 16 24 C -0.13 -1.55 9.95 -39.93 -0.40 -1.95 16 25 C -0.10 -1.42 9.21 -39.49 -0.36 -1.79 16 26 C -0.04 -0.70 5.74 -106.83 -0.61 -1.31 16 27 H 0.06 0.81 6.89 -51.93 -0.36 0.45 16 28 H 0.05 0.64 8.06 -51.93 -0.42 0.22 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.36 7.40 6.33 -39.29 -0.25 7.15 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.62 6.79 -51.93 -0.35 0.27 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.02 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.14 2.10 7.01 -52.49 -0.37 1.73 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.13 1.74 6.49 -52.49 -0.34 1.40 16 LS Contribution 346.30 15.07 5.22 5.22 Total: -1.00 -29.64 346.30 -10.69 -40.33 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.55 Total: 6.59 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -4.54 Total: -30.07 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.21 Total: -38.84 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.64 -10.69 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299566202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.276 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds