Wall clock time and date at job start Tue Mar 31 2020 06:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47468 * 2 1 4 4 N 1.46894 * 109.47231 * 120.00778 * 2 1 3 5 5 C 1.46902 * 110.99745 * 280.79614 * 4 2 1 6 6 H 1.08994 * 109.47435 * 346.44631 * 5 4 2 7 7 C 1.53007 * 109.46790 * 106.44243 * 5 4 2 8 8 C 1.52995 * 109.47703 * 226.43900 * 5 4 2 9 9 C 1.50705 * 109.46909 * 65.00202 * 8 5 4 10 10 H 1.07995 * 119.99895 * 0.02562 * 9 8 5 11 11 C 1.37878 * 119.99693 * 180.02562 * 9 8 5 12 12 N 1.31506 * 120.00180 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99685 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46947 * 59.99778 * 13 11 9 15 15 H 1.48497 * 109.47228 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47284 * 300.00014 * 13 11 9 17 17 C 1.50707 * 109.46862 * 240.00234 * 2 1 3 18 18 C 1.36125 * 120.17110 * 265.00331 * 17 2 1 19 19 C 1.39338 * 120.98659 * 180.02562 * 18 17 2 20 20 C 1.36125 * 120.98729 * 359.97438 * 19 18 17 21 21 C 1.40499 * 119.65565 * 0.02562 * 20 19 18 22 22 C 1.40553 * 121.29046 * 179.97438 * 21 20 19 23 23 C 1.36091 * 119.65482 * 180.02562 * 22 21 20 24 24 C 1.39379 * 120.98958 * 0.02562 * 23 22 21 25 25 C 1.36084 * 120.99799 * 359.95975 * 24 23 22 26 26 C 1.40504 * 120.16981 * 85.02230 * 17 2 1 27 27 H 1.09007 * 109.46505 * 306.73197 * 1 2 3 28 28 H 1.08998 * 109.47319 * 66.72776 * 1 2 3 29 29 H 1.08998 * 109.47372 * 186.73367 * 1 2 3 30 30 H 1.00906 * 111.00551 * 156.84942 * 4 2 1 31 31 H 1.08994 * 109.47448 * 53.70907 * 7 5 4 32 32 H 1.09001 * 109.47323 * 173.70954 * 7 5 4 33 33 H 1.09007 * 109.46821 * 293.71189 * 7 5 4 34 34 H 1.09000 * 109.47635 * 185.00652 * 8 5 4 35 35 H 1.09010 * 109.47092 * 305.00455 * 8 5 4 36 36 H 0.97007 * 119.99768 * 179.97438 * 12 11 9 37 37 H 1.07993 * 119.51075 * 0.04033 * 18 17 2 38 38 H 1.07997 * 119.50719 * 179.97438 * 19 18 17 39 39 H 1.08002 * 120.17389 * 179.72853 * 20 19 18 40 40 H 1.08003 * 120.17184 * 359.97438 * 22 21 20 41 41 H 1.07995 * 119.49974 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.49855 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.17408 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.9529 0.1830 2.3770 6 1 1.7853 1.2111 2.0563 7 6 0.8013 -0.2637 3.2799 8 6 3.2700 0.0983 3.1509 9 6 4.3865 0.6532 2.3043 10 1 4.1775 1.0290 1.3137 11 6 5.6749 0.6811 2.7947 12 7 5.9295 0.2229 4.0008 13 14 7.0590 1.3682 1.7451 14 1 6.7708 2.7866 1.4128 15 1 8.3375 1.2851 2.4958 16 1 7.1690 0.5787 0.4921 17 6 2.0323 -0.7104 -1.2306 18 6 2.3569 -2.0311 -1.1735 19 6 2.8234 -2.7046 -2.3006 20 6 2.9675 -2.0614 -3.4916 21 6 2.6424 -0.6980 -3.5892 22 6 2.7786 -0.0001 -4.8016 23 6 2.4545 1.3204 -4.8584 24 6 1.9889 1.9942 -3.7307 25 6 1.8440 1.3512 -2.5401 26 6 2.1682 -0.0128 -2.4426 27 1 -0.3632 0.6147 0.8237 28 1 -0.3634 0.4060 -0.9440 29 1 -0.3634 -1.0205 0.1205 30 1 2.9568 -1.0395 1.0593 31 1 0.9099 -1.3236 3.5098 32 1 0.8203 0.3125 4.2050 33 1 -0.1468 -0.0983 2.7682 34 1 3.1890 0.6776 4.0706 35 1 3.4819 -0.9428 3.3947 36 1 6.8360 0.2422 4.3456 37 1 2.2512 -2.5651 -0.2407 38 1 3.0744 -3.7525 -2.2282 39 1 3.3344 -2.5952 -4.3559 40 1 3.1393 -0.5089 -5.6833 41 1 2.5604 1.8543 -5.7912 42 1 1.7391 3.0425 -3.8029 43 1 1.4817 1.8863 -1.6748 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299566202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:07 Heat of formation + Delta-G solvation = 12.436010 kcal Electronic energy + Delta-G solvation = -22155.401547 eV Core-core repulsion = 19163.696956 eV Total energy + Delta-G solvation = -2991.704592 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47819 -38.86338 -37.19498 -35.50057 -34.22137 -32.15386 -31.20608 -29.75383 -29.38060 -29.12227 -25.07814 -24.63305 -23.86901 -23.60697 -21.20446 -20.93293 -18.54575 -18.29242 -17.84807 -17.35776 -16.69644 -16.16520 -15.95135 -15.62098 -15.02676 -14.85647 -14.62634 -14.37044 -14.26651 -13.81884 -13.70682 -13.46804 -13.29671 -13.19126 -13.12754 -12.78708 -12.67109 -12.52837 -12.33475 -12.30164 -12.11837 -12.03512 -11.77307 -11.45761 -11.15015 -11.02140 -10.68873 -10.61114 -9.48579 -9.23095 -8.71017 -8.23161 -6.32974 -0.34282 0.14113 1.15739 1.33761 1.35058 1.43046 2.14903 2.35382 3.08311 3.21638 3.34647 3.64366 3.95916 4.00520 4.09358 4.18514 4.25063 4.35309 4.37078 4.48184 4.53406 4.56790 4.68604 4.70984 4.72119 4.85345 4.92799 4.96137 5.04282 5.12683 5.20414 5.27979 5.32811 5.35773 5.40870 5.43302 5.48155 5.49646 5.58311 5.66996 5.79146 5.81667 5.97610 6.16871 6.18927 6.41689 6.58626 6.81786 7.35735 8.87900 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.005802 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.629586 B = 4825.089447 C = 5706.300768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.126 3.874 3 H 0.032 0.968 4 N -0.669 5.669 5 C 0.095 3.905 6 H 0.034 0.966 7 C -0.125 4.125 8 C 0.021 3.979 9 C -0.532 4.532 10 H 0.049 0.951 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.950 3.050 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.272 1.272 17 C -0.084 4.084 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.073 4.073 22 C -0.111 4.111 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.066 4.066 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.341 0.659 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.063 0.937 34 H -0.004 1.004 35 H -0.001 1.001 36 H 0.264 0.736 37 H 0.128 0.872 38 H 0.144 0.856 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.142 0.858 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 -1.280 -17.787 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.016 3.984 3 H 0.050 0.950 4 N -0.302 5.302 5 C -0.014 4.014 6 H 0.052 0.948 7 C -0.183 4.183 8 C -0.017 4.017 9 C -0.570 4.570 10 H 0.067 0.933 11 C -0.188 4.188 12 N -0.566 5.566 13 Si 0.776 3.224 14 H -0.196 1.196 15 H -0.205 1.205 16 H -0.198 1.198 17 C -0.084 4.084 18 C -0.134 4.134 19 C -0.138 4.138 20 C -0.133 4.133 21 C -0.073 4.073 22 C -0.129 4.129 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.145 4.145 26 C -0.066 4.066 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.014 0.986 35 H 0.017 0.983 36 H 0.072 0.928 37 H 0.146 0.854 38 H 0.162 0.838 39 H 0.171 0.829 40 H 0.170 0.830 41 H 0.169 0.831 42 H 0.160 0.840 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.973 -1.605 -17.512 20.217 hybrid contribution 1.777 0.967 0.110 2.026 sum -8.196 -0.638 -17.402 19.246 Atomic orbital electron populations 1.21725 0.92390 1.02516 1.01422 1.20433 0.96548 0.94278 0.87097 0.94978 1.60901 1.29772 1.37166 1.02316 1.21503 0.95379 0.93469 0.91075 0.94834 1.21747 0.97400 1.00985 0.98160 1.19330 0.92072 0.95451 0.94847 1.21415 0.93553 1.40749 1.01243 0.93310 1.25773 1.01298 0.95700 0.96061 1.70064 1.21211 1.47489 1.17797 0.85724 0.78672 0.79116 0.78910 1.19624 1.20536 1.19764 1.19877 0.99713 0.94869 0.93974 1.20961 0.98571 0.94327 0.99550 1.21147 0.98991 1.01204 0.92502 1.21326 0.99938 0.93084 0.98958 1.18414 1.00198 0.94891 0.93820 1.21353 0.99652 0.95163 0.96701 1.21200 0.98701 0.94821 0.99336 1.21171 0.99030 1.01060 0.92577 1.21234 1.00791 0.93479 0.99037 1.18177 1.00541 0.94557 0.93350 0.92184 0.91955 0.91914 0.83962 0.93063 0.93324 0.91771 0.98598 0.98263 0.92759 0.85383 0.83822 0.82891 0.82990 0.83118 0.83992 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.47 9.03 71.98 0.65 -2.82 16 2 C 0.13 4.28 2.10 44.17 0.09 4.38 16 3 H 0.03 1.21 6.11 -2.39 -0.01 1.19 16 4 N -0.67 -25.73 5.25 -473.31 -2.48 -28.21 16 5 C 0.10 3.97 2.36 44.92 0.11 4.08 16 6 H 0.03 1.44 7.26 -2.39 -0.02 1.42 16 7 C -0.12 -4.38 9.47 71.98 0.68 -3.70 16 8 C 0.02 1.08 4.39 29.85 0.13 1.21 16 9 C -0.53 -29.93 8.24 25.60 0.21 -29.72 16 10 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 11 C 0.01 0.60 5.46 84.66 0.46 1.06 16 12 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 13 Si 0.95 45.13 29.54 68.60 2.03 47.15 16 14 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 17 C -0.08 -2.76 4.93 -19.80 -0.10 -2.86 16 18 C -0.12 -3.61 8.85 22.04 0.20 -3.42 16 19 C -0.12 -3.13 9.95 22.04 0.22 -2.91 16 20 C -0.12 -2.78 9.77 22.33 0.22 -2.56 16 21 C -0.07 -1.98 5.74 -21.30 -0.12 -2.10 16 22 C -0.11 -2.36 9.77 22.33 0.22 -2.15 16 23 C -0.12 -2.44 9.95 22.04 0.22 -2.22 16 24 C -0.12 -2.73 9.95 22.04 0.22 -2.51 16 25 C -0.13 -3.59 9.21 22.33 0.21 -3.39 16 26 C -0.07 -2.04 5.74 -21.30 -0.12 -2.16 16 27 H 0.06 1.63 6.89 -2.38 -0.02 1.62 16 28 H 0.06 1.59 8.06 -2.39 -0.02 1.57 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.34 14.82 6.33 -89.69 -0.57 14.26 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.93 6.79 -2.38 -0.02 1.92 16 34 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 36 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 37 H 0.13 4.08 7.01 -2.91 -0.02 4.06 16 38 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 39 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 40 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 43 H 0.12 3.41 6.49 -2.91 -0.02 3.39 16 Total: -1.00 -65.08 346.30 3.74 -61.34 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.42 Total: 27.37 kcal Atomic # 6 Polarization: -55.29 SS G_CDS: 3.49 Total: -51.80 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -2.20 Total: -84.06 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -65.08 3.74 -61.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299566202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.775 kcal (2) G-P(sol) polarization free energy of solvation -65.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds