Wall clock time and date at job start Tue Mar 31 2020 06:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 N 1.46900 * 109.47628 * 120.00122 * 2 1 3 14 14 C 1.46903 * 111.00036 * 275.00445 * 13 2 1 15 15 H 1.09004 * 109.47047 * 34.99364 * 14 13 2 16 16 C 1.52996 * 109.46675 * 274.99814 * 14 13 2 17 17 C 1.50695 * 109.47133 * 154.99686 * 14 13 2 18 18 C 1.36125 * 120.17408 * 24.99819 * 17 14 13 19 19 C 1.39336 * 120.98998 * 179.97438 * 18 17 14 20 20 C 1.36130 * 120.98768 * 0.02562 * 19 18 17 21 21 C 1.40508 * 119.65371 * 359.97438 * 20 19 18 22 22 C 1.40544 * 121.29014 * 180.02562 * 21 20 19 23 23 C 1.36097 * 119.64727 * 179.18459 * 22 21 20 24 24 C 1.39384 * 120.99506 * 0.82486 * 23 22 21 25 25 C 1.36085 * 120.99150 * 359.43091 * 24 23 22 26 26 C 1.40499 * 120.17234 * 204.71906 * 17 14 13 27 27 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 28 28 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 29 29 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 31 31 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 32 32 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 33 33 H 1.00895 * 111.00149 * 151.04630 * 13 2 1 34 34 H 1.09000 * 109.46816 * 180.02562 * 16 14 13 35 35 H 1.09004 * 109.47015 * 299.99569 * 16 14 13 36 36 H 1.08997 * 109.47740 * 59.99639 * 16 14 13 37 37 H 1.08006 * 119.50648 * 359.95514 * 18 17 14 38 38 H 1.07992 * 119.50525 * 179.97438 * 19 18 17 39 39 H 1.07994 * 120.17455 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.17279 * 359.95914 * 22 21 20 41 41 H 1.08001 * 119.49742 * 180.28129 * 23 22 21 42 42 H 1.07995 * 119.50134 * 179.45104 * 24 23 22 43 43 H 1.08000 * 120.17173 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 3.5759 -1.8323 -3.3029 9 14 6.0908 -1.0495 -2.4440 10 1 6.7049 -2.2018 -1.7365 11 1 6.5248 -1.0524 -3.8642 12 1 6.5224 0.2156 -1.7971 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.2576 0.9329 2.2907 16 6 3.4111 0.9809 2.3223 17 6 1.9787 -0.5677 3.6258 18 6 2.3522 -1.8764 3.6536 19 6 2.2638 -2.6229 4.8268 20 6 1.8009 -2.0653 5.9792 21 6 1.4060 -0.7169 5.9893 22 6 0.9235 -0.1063 7.1596 23 6 0.5659 1.2066 7.1356 24 6 0.6544 1.9533 5.9620 25 6 1.1118 1.3944 4.8087 26 6 1.5014 0.0440 4.7971 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6052 -0.2616 -2.1370 31 1 1.7516 -1.7714 -1.2057 32 1 4.0598 -2.2352 -4.0406 33 1 2.9173 -1.1204 1.0286 34 1 3.4578 1.6595 3.1740 35 1 4.2360 0.2705 2.3785 36 1 3.4862 1.5524 1.3972 37 1 2.7223 -2.3433 2.7527 38 1 2.5663 -3.6596 4.8217 39 1 1.7383 -2.6560 6.8811 40 1 0.8489 -0.6727 8.0761 41 1 0.1998 1.6745 8.0375 42 1 0.3557 2.9912 5.9683 43 1 1.1745 1.9852 3.9068 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299566205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:11 Heat of formation + Delta-G solvation = 11.926897 kcal Electronic energy + Delta-G solvation = -21907.047283 eV Core-core repulsion = 18915.320615 eV Total energy + Delta-G solvation = -2991.726668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.42570 -38.89111 -37.16994 -35.49644 -34.18686 -32.25340 -31.14597 -29.68654 -29.36846 -28.89395 -25.26378 -24.61267 -23.83433 -23.61491 -21.19338 -20.91291 -18.49104 -18.23849 -17.89075 -17.18138 -16.66915 -16.34889 -15.87867 -15.27846 -14.99251 -14.84580 -14.64789 -14.36589 -14.23912 -14.00618 -13.61908 -13.54030 -13.41880 -13.31649 -13.05899 -12.68648 -12.63362 -12.49617 -12.41002 -12.27592 -12.15404 -11.96014 -11.70867 -11.42209 -11.20714 -10.98090 -10.64337 -10.56355 -9.44456 -9.18751 -8.64902 -8.18363 -6.28272 -0.29029 0.18649 1.20733 1.39566 1.39811 1.49964 2.19438 2.40247 3.12156 3.24603 3.37564 3.73884 4.00097 4.03677 4.11018 4.21123 4.23300 4.31129 4.37007 4.42158 4.56008 4.56979 4.61140 4.65527 4.72826 4.78345 4.88954 4.96751 5.01763 5.14071 5.20119 5.23337 5.31429 5.34757 5.40706 5.46360 5.50750 5.54075 5.63119 5.72396 5.85684 5.86918 6.02421 6.20962 6.22365 6.44623 6.63693 6.87109 7.40487 8.93387 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022812 B = 0.004082 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.116818 B = 6857.450401 C = 7155.317356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.098 3.902 3 H 0.030 0.970 4 C 0.029 3.971 5 C -0.530 4.530 6 H 0.060 0.940 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.956 3.044 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.265 1.265 13 N -0.676 5.676 14 C 0.125 3.875 15 H 0.085 0.915 16 C -0.168 4.168 17 C -0.065 4.065 18 C -0.115 4.115 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.073 4.073 22 C -0.111 4.111 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.063 4.063 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.046 0.954 30 H -0.005 1.005 31 H -0.004 1.004 32 H 0.262 0.738 33 H 0.345 0.655 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.116 0.884 38 H 0.138 0.862 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 5.093 22.081 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.011 4.011 3 H 0.048 0.952 4 C -0.008 4.008 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.782 3.218 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.309 5.309 14 C 0.015 3.985 15 H 0.103 0.897 16 C -0.227 4.227 17 C -0.065 4.065 18 C -0.133 4.133 19 C -0.139 4.139 20 C -0.134 4.134 21 C -0.073 4.073 22 C -0.129 4.129 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.142 4.142 26 C -0.063 4.063 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.013 0.987 31 H 0.014 0.986 32 H 0.071 0.929 33 H 0.165 0.835 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.169 0.831 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.161 0.839 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.286 4.755 22.067 23.184 hybrid contribution 1.740 0.253 -1.196 2.127 sum -3.546 5.009 20.871 21.754 Atomic orbital electron populations 1.21725 0.94877 1.01271 1.00733 1.21403 0.94696 0.95118 0.89923 0.95238 1.19118 0.94908 0.94653 0.92157 1.21525 0.93162 1.34018 1.08109 0.92186 1.25846 1.03030 0.94931 0.95407 1.70093 1.37449 1.36923 1.12631 0.85579 0.80209 0.78825 0.77220 1.19887 1.21118 1.18986 1.60681 1.34031 1.32041 1.04109 1.20375 0.97263 0.92483 0.88354 0.89727 1.22381 0.97455 1.00774 1.02041 1.19705 0.98462 0.94802 0.93568 1.20840 0.99771 0.94230 0.98451 1.21098 0.99566 1.00755 0.92519 1.21277 0.99161 0.93865 0.99131 1.18388 1.00472 0.94644 0.93766 1.21322 0.98540 0.95831 0.97214 1.21197 0.99692 0.94287 0.98917 1.21168 0.98892 1.01175 0.92548 1.21224 0.99701 0.93783 0.99505 1.18124 1.00378 0.94757 0.93042 0.92418 0.92754 0.93476 0.98710 0.98570 0.92914 0.83519 0.90949 0.93113 0.92930 0.86637 0.84428 0.83131 0.83269 0.83307 0.83908 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.40 71.98 0.68 -3.94 16 2 C 0.10 4.05 2.40 44.92 0.11 4.16 16 3 H 0.03 1.23 7.11 -2.38 -0.02 1.21 16 4 C 0.03 1.51 4.57 29.85 0.14 1.65 16 5 C -0.53 -29.01 8.12 25.60 0.21 -28.80 16 6 H 0.06 3.14 7.49 -2.91 -0.02 3.12 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 9 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.68 -25.76 5.05 -473.31 -2.39 -28.15 16 14 C 0.13 3.99 2.00 44.17 0.09 4.08 16 15 H 0.08 2.61 5.69 -2.38 -0.01 2.59 16 16 C -0.17 -5.12 9.13 71.98 0.66 -4.47 16 17 C -0.06 -1.98 5.07 -19.81 -0.10 -2.08 16 18 C -0.11 -3.50 9.25 22.04 0.20 -3.30 16 19 C -0.12 -3.06 9.95 22.04 0.22 -2.84 16 20 C -0.12 -2.61 9.77 22.33 0.22 -2.39 16 21 C -0.07 -1.77 5.74 -21.30 -0.12 -1.89 16 22 C -0.11 -2.08 9.77 22.33 0.22 -1.86 16 23 C -0.12 -2.07 9.95 22.05 0.22 -1.85 16 24 C -0.12 -2.27 9.95 22.04 0.22 -2.05 16 25 C -0.12 -2.96 9.16 22.33 0.20 -2.75 16 26 C -0.06 -1.72 5.74 -21.30 -0.12 -1.85 16 27 H 0.06 1.82 7.43 -2.38 -0.02 1.80 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 32 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.34 14.38 6.36 -89.70 -0.57 13.81 16 34 H 0.07 1.90 8.02 -2.39 -0.02 1.88 16 35 H 0.05 1.62 8.13 -2.38 -0.02 1.60 16 36 H 0.05 1.71 7.43 -2.39 -0.02 1.69 16 37 H 0.12 3.82 6.82 -2.91 -0.02 3.80 16 38 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 41 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 43 H 0.13 2.86 6.49 -2.91 -0.02 2.84 16 Total: -1.00 -64.10 346.74 3.83 -60.26 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.42 Total: 27.28 kcal Atomic # 6 Polarization: -52.87 SS G_CDS: 3.49 Total: -49.37 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.11 Total: -84.05 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -64.10 3.83 -60.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299566205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.190 kcal (2) G-P(sol) polarization free energy of solvation -64.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds